Wall clock time and date at job start Mon Mar 30 2020 00:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50705 * 119.99521 * 2 1 4 4 C 1.53003 * 109.46824 * 124.99739 * 3 2 1 5 5 C 1.50697 * 109.46809 * 179.97438 * 4 3 2 6 6 N 1.29944 * 126.29027 * 270.02499 * 5 4 3 7 7 O 1.21304 * 110.25356 * 179.68390 * 6 5 4 8 8 C 1.33636 * 109.80717 * 0.47322 * 7 6 5 9 9 C 1.50709 * 126.55195 * 179.79940 * 8 7 6 10 10 H 1.08993 * 109.47237 * 164.68234 * 9 8 7 11 11 N 1.46901 * 109.46881 * 44.68595 * 9 8 7 12 12 C 1.52999 * 109.46788 * 284.68891 * 9 8 7 13 13 C 1.53006 * 109.46626 * 184.99743 * 12 9 8 14 14 C 1.50699 * 109.46866 * 179.97438 * 13 12 9 15 15 H 1.08003 * 119.99963 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00270 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99835 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00496 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47141 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47162 * 120.00342 * 18 16 14 21 21 H 1.48501 * 109.47494 * 240.00320 * 18 16 14 22 22 N 1.31133 * 106.90054 * 359.53420 * 8 7 6 23 23 H 1.08001 * 119.99546 * 179.97438 * 1 2 3 24 24 H 1.07997 * 120.00410 * 0.02562 * 1 2 3 25 25 H 1.07991 * 120.00139 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.47167 * 5.00023 * 3 2 1 27 27 H 1.09000 * 109.47171 * 245.00021 * 3 2 1 28 28 H 1.08998 * 109.47017 * 60.00192 * 4 3 2 29 29 H 1.08998 * 109.46982 * 299.99938 * 4 3 2 30 30 H 1.00892 * 111.00219 * 176.05383 * 11 9 8 31 31 H 1.00908 * 110.99656 * 300.00417 * 11 9 8 32 32 H 1.08993 * 109.47839 * 64.99813 * 12 9 8 33 33 H 1.09000 * 109.47160 * 304.99374 * 12 9 8 34 34 H 1.09000 * 109.47050 * 299.99699 * 13 12 9 35 35 H 1.09001 * 109.46801 * 59.99811 * 13 12 9 36 36 H 0.96992 * 120.00038 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0349 1.3332 1.1817 5 6 3.7888 2.6381 1.1813 6 7 4.9162 2.8748 0.5802 7 8 5.2586 4.0234 0.7670 8 6 4.3599 4.6444 1.5367 9 6 4.4148 6.0761 2.0042 10 1 3.4353 6.3742 2.3780 11 7 4.7951 6.9436 0.8813 12 6 5.4496 6.2077 3.1235 13 6 5.4175 7.6314 3.6829 14 6 6.4362 7.7609 4.7858 15 1 7.0454 6.9124 5.0605 16 6 6.5907 8.9624 5.4441 17 7 5.8485 9.9955 5.1099 18 14 7.8530 9.1228 6.8116 19 1 8.5531 7.8258 6.9936 20 1 8.8407 10.1720 6.4530 21 1 7.1690 9.4980 8.0752 22 7 3.4180 3.7717 1.8028 23 1 -0.5399 -0.9354 -0.0004 24 1 -0.5401 0.9352 -0.0004 25 1 1.8500 -0.9352 -0.0004 26 1 1.3585 2.1317 0.0896 27 1 2.6212 1.4028 -0.9314 28 1 3.7399 0.5068 1.0921 29 1 2.4771 1.2357 2.1130 30 1 4.7766 7.9152 1.1525 31 1 5.7005 6.6871 0.5168 32 1 6.4426 5.9954 2.7273 33 1 5.2167 5.4995 3.9187 34 1 5.6504 8.3396 2.8877 35 1 4.4245 7.8437 4.0792 36 1 5.9574 10.8409 5.5727 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823262945.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:45 Heat of formation + Delta-G solvation = 41.506036 kcal Electronic energy + Delta-G solvation = -17562.231831 eV Core-core repulsion = 14662.469837 eV Total energy + Delta-G solvation = -2899.761994 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.64025 -38.27969 -37.77418 -36.06069 -35.08937 -33.37081 -31.80114 -31.09141 -28.25297 -26.01569 -25.95570 -24.11875 -22.66456 -21.34116 -20.71984 -19.08130 -18.80039 -18.27940 -17.43257 -16.46974 -16.32167 -16.06828 -15.51083 -15.12784 -15.03564 -14.77274 -14.17254 -13.97175 -13.74513 -13.46550 -13.34940 -12.97799 -12.79674 -12.54664 -12.44965 -12.24701 -11.99359 -11.93201 -11.81546 -11.54664 -11.31101 -11.00616 -10.55457 -10.25622 -9.84466 -8.21176 -6.30695 0.05034 1.10778 1.39617 1.41581 1.41922 1.52934 1.72443 2.40155 2.51149 2.95178 3.13220 3.63427 3.76730 3.93579 4.01117 4.09267 4.19058 4.22279 4.43684 4.45074 4.64543 4.75322 4.80133 4.86265 4.94358 5.04005 5.05735 5.11380 5.47451 5.65775 5.73422 5.80971 5.87458 5.94927 6.21389 6.40896 6.84469 7.07970 7.38370 8.89885 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.041762 B = 0.003484 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.305464 B = 8034.318851 C = 8136.652832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.159 4.159 3 C -0.082 4.082 4 C -0.021 4.021 5 C 0.169 3.831 6 N -0.405 5.405 7 O 0.069 5.931 8 C 0.212 3.788 9 C 0.193 3.807 10 H 0.122 0.878 11 N -0.833 5.833 12 C -0.127 4.127 13 C 0.030 3.970 14 C -0.544 4.544 15 H 0.054 0.946 16 C 0.007 3.993 17 N -0.925 5.925 18 Si 0.957 3.043 19 H -0.267 1.267 20 H -0.278 1.278 21 H -0.280 1.280 22 N -0.502 5.502 23 H 0.114 0.886 24 H 0.094 0.906 25 H 0.127 0.873 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.366 0.634 31 H 0.352 0.648 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.016 0.984 35 H 0.001 0.999 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.526 -15.989 -9.489 19.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.177 4.177 3 C -0.121 4.121 4 C -0.059 4.059 5 C -0.104 4.104 6 N -0.116 5.116 7 O 0.015 5.985 8 C -0.009 4.009 9 C 0.079 3.921 10 H 0.140 0.860 11 N -0.367 5.367 12 C -0.167 4.167 13 C -0.007 4.007 14 C -0.582 4.582 15 H 0.072 0.928 16 C -0.192 4.192 17 N -0.565 5.565 18 Si 0.783 3.217 19 H -0.191 1.191 20 H -0.203 1.203 21 H -0.206 1.206 22 N -0.236 5.236 23 H 0.133 0.867 24 H 0.112 0.888 25 H 0.145 0.855 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.184 0.816 31 H 0.165 0.835 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.019 0.981 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.146 -16.831 -10.115 20.896 hybrid contribution 1.463 0.970 1.457 2.281 sum -5.684 -15.862 -8.657 18.943 Atomic orbital electron populations 1.24079 0.95946 1.02692 0.99779 1.22879 0.96175 0.97667 1.01018 1.20632 0.97470 0.96977 0.97017 1.20104 0.97070 0.87074 1.01702 1.26480 0.91530 0.98300 0.94046 1.74576 1.16981 0.96497 1.23529 1.85237 1.43857 1.17173 1.52219 1.29003 0.83898 0.98772 0.89189 1.19953 1.02089 0.79935 0.90132 0.86018 1.58967 1.36995 1.08454 1.32272 1.22277 0.97749 0.99853 0.96828 1.18972 0.95788 0.90844 0.95117 1.21623 1.20783 0.96800 1.18986 0.92767 1.25825 0.98047 0.95681 0.99654 1.70052 1.41082 1.02350 1.43039 0.85512 0.78972 0.78277 0.78971 1.19125 1.20324 1.20553 1.71898 1.26425 1.00671 1.24608 0.86735 0.88812 0.85513 0.91866 0.91166 0.87342 0.87696 0.81626 0.83505 0.91796 0.92738 0.96587 0.98084 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.49 14.32 67.78 0.97 -1.52 16 2 C -0.16 -2.24 9.52 25.64 0.24 -1.99 16 3 C -0.08 -1.49 5.64 29.85 0.17 -1.32 16 4 C -0.02 -0.42 5.82 29.85 0.17 -0.24 16 5 C 0.17 4.89 7.47 138.46 1.03 5.92 16 6 N -0.40 -12.69 12.16 -60.32 -0.73 -13.42 16 7 O 0.07 2.23 11.29 74.89 0.85 3.07 16 8 C 0.21 6.87 7.32 88.38 0.65 7.51 16 9 C 0.19 6.17 3.35 44.17 0.15 6.32 16 10 H 0.12 3.94 8.14 -2.39 -0.02 3.92 16 11 N -0.83 -23.96 9.17 -171.80 -1.58 -25.53 16 12 C -0.13 -4.76 4.78 30.60 0.15 -4.61 16 13 C 0.03 1.42 4.74 29.85 0.14 1.56 16 14 C -0.54 -29.29 9.11 25.60 0.23 -29.05 16 15 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 16 C 0.01 0.36 5.46 84.65 0.46 0.82 16 17 N -0.93 -53.27 13.29 21.45 0.28 -52.99 16 18 Si 0.96 42.93 29.54 68.60 2.03 44.95 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 N -0.50 -16.29 11.55 -303.19 -3.50 -19.80 16 23 H 0.11 1.13 8.06 -2.91 -0.02 1.11 16 24 H 0.09 1.30 7.84 -2.91 -0.02 1.28 16 25 H 0.13 1.37 8.06 -2.92 -0.02 1.35 16 26 H 0.06 1.27 7.79 -2.39 -0.02 1.26 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.37 10.71 7.55 -89.70 -0.68 10.04 16 31 H 0.35 9.32 8.97 -89.69 -0.80 8.52 16 32 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.02 0.76 6.87 -2.39 -0.02 0.74 16 35 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -61.50 314.02 1.32 -60.18 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -0.40 Total: 20.13 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 4.37 Total: -16.60 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -5.53 Total: -111.74 kcal Atomic # 8 Polarization: 2.23 SS G_CDS: 0.85 Total: 3.07 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -61.50 1.32 -60.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823262945.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.688 kcal (2) G-P(sol) polarization free energy of solvation -61.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds