Wall clock time and date at job start Sun Mar 29 2020 23:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46848 * 2 1 4 4 O 1.42895 * 109.46875 * 119.99704 * 2 1 3 5 5 C 1.50700 * 109.47098 * 239.99868 * 2 1 3 6 6 C 1.35350 * 126.74908 * 185.00184 * 5 2 1 7 7 N 1.35306 * 106.17462 * 179.97438 * 6 5 2 8 8 C 1.46508 * 125.86932 * 180.02562 * 7 6 5 9 9 C 1.52992 * 109.47160 * 123.57108 * 8 7 6 10 10 C 1.50702 * 115.55308 * 279.11450 * 9 8 7 11 11 H 1.08001 * 120.00289 * 144.78544 * 10 9 8 12 12 C 1.37881 * 119.99582 * 324.79520 * 10 9 8 13 13 N 1.31509 * 120.00325 * 341.00321 * 12 10 9 14 14 Si 1.86801 * 119.99637 * 161.01334 * 12 10 9 15 15 H 1.48497 * 109.47243 * 89.99547 * 14 12 10 16 16 H 1.48509 * 109.46946 * 209.99624 * 14 12 10 17 17 H 1.48502 * 109.47215 * 329.99215 * 14 12 10 18 18 C 1.53001 * 117.49636 * 133.41211 * 9 8 7 19 19 C 1.53000 * 117.49923 * 64.78996 * 9 8 7 20 20 N 1.28713 * 108.26321 * 359.97438 * 7 6 5 21 21 N 1.28625 * 110.18125 * 359.72125 * 20 7 6 22 22 H 1.08998 * 109.47822 * 300.00460 * 1 2 3 23 23 H 1.09005 * 109.47182 * 60.00449 * 1 2 3 24 24 H 1.09006 * 109.47242 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46841 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46737 * 299.99215 * 3 2 1 27 27 H 1.08995 * 109.47229 * 59.99981 * 3 2 1 28 28 H 0.96703 * 114.00480 * 60.00128 * 4 2 1 29 29 H 1.08005 * 126.91042 * 359.96241 * 6 5 2 30 30 H 1.09000 * 109.46895 * 243.57573 * 8 7 6 31 31 H 1.09006 * 109.46806 * 3.56790 * 8 7 6 32 32 H 0.96998 * 120.00207 * 185.02015 * 13 12 10 33 33 H 1.08998 * 117.50277 * 359.97438 * 18 9 8 34 34 H 1.08997 * 117.50052 * 145.02157 * 18 9 8 35 35 H 1.09008 * 117.49474 * 214.97829 * 19 9 8 36 36 H 1.08996 * 117.50087 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0324 -0.7104 -1.2304 6 6 3.3209 -0.9940 -1.5325 7 7 3.2965 -1.6348 -2.7240 8 6 4.4640 -2.1377 -3.4523 9 6 4.2939 -3.6349 -3.7170 10 6 4.6392 -4.5422 -2.5643 11 1 4.0754 -5.4491 -2.4032 12 6 5.6750 -4.2143 -1.7154 13 7 6.5876 -3.3470 -2.0956 14 14 5.7821 -5.0022 -0.0250 15 1 6.5781 -6.2528 -0.1114 16 1 6.4384 -4.0618 0.9187 17 1 4.4151 -5.3180 0.4614 18 6 4.5938 -4.1411 -5.1294 19 6 3.1478 -4.0642 -4.6352 20 7 2.0712 -1.7275 -3.1071 21 7 1.2920 -1.1913 -2.2355 22 1 -0.3635 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6766 1.9563 0.8899 28 1 1.7210 -1.5952 1.2330 29 1 4.1931 -0.7564 -0.9414 30 1 4.5558 -1.6090 -4.4011 31 1 5.3621 -1.9737 -2.8567 32 1 7.3550 -3.1707 -1.5292 33 1 4.9118 -3.4074 -5.8701 34 1 5.0410 -5.1304 -5.2251 35 1 2.6438 -5.0031 -4.4056 36 1 2.5147 -3.2801 -5.0503 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849145005.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:07 Heat of formation + Delta-G solvation = 65.557990 kcal Electronic energy + Delta-G solvation = -19075.588587 eV Core-core repulsion = 16176.869564 eV Total energy + Delta-G solvation = -2898.719023 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.53069 -37.81669 -36.89842 -33.19617 -32.47171 -32.04961 -29.63164 -27.41307 -26.73652 -25.65981 -22.84480 -21.44803 -21.15002 -20.10746 -19.20606 -17.33587 -16.34642 -15.88685 -15.45806 -14.86169 -14.49876 -14.44244 -13.96629 -13.72006 -13.12769 -12.50910 -12.20705 -12.07957 -11.96804 -11.85761 -11.55842 -11.32964 -11.14472 -10.92151 -10.73502 -10.59866 -10.44749 -10.21479 -9.99297 -9.87793 -9.43616 -9.06530 -8.90276 -8.57297 -8.31589 -6.36925 -4.33097 2.40812 3.08941 3.12514 3.22278 3.28069 3.29690 4.17816 4.40031 4.68358 4.76441 5.08361 5.23219 5.36250 5.53001 5.68908 5.73710 5.82501 5.83392 5.91583 6.02341 6.09603 6.23846 6.25116 6.28226 6.35532 6.47119 6.66478 6.71265 6.74548 6.94979 7.13477 7.24134 7.50089 7.67694 7.81050 8.13770 8.60532 9.24355 9.26986 10.66750 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.020000 B = 0.008579 C = 0.006824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.684096 B = 3262.891384 C = 4102.096576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.220 3.780 3 C -0.131 4.131 4 O -0.558 6.558 5 C -0.083 4.083 6 C -0.017 4.017 7 N -0.250 5.250 8 C 0.128 3.872 9 C 0.029 3.971 10 C -0.485 4.485 11 H 0.064 0.936 12 C 0.070 3.930 13 N -0.883 5.883 14 Si 0.891 3.109 15 H -0.278 1.278 16 H -0.280 1.280 17 H -0.271 1.271 18 C -0.191 4.191 19 C -0.189 4.189 20 N -0.083 5.083 21 N -0.281 5.281 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.380 0.620 29 H 0.179 0.821 30 H 0.066 0.934 31 H 0.154 0.846 32 H 0.268 0.732 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.821 6.955 2.909 8.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.177 3.823 3 C -0.189 4.189 4 O -0.363 6.363 5 C -0.222 4.222 6 C -0.170 4.170 7 N -0.041 5.041 8 C 0.009 3.991 9 C 0.028 3.972 10 C -0.522 4.522 11 H 0.083 0.917 12 C -0.132 4.132 13 N -0.521 5.521 14 Si 0.718 3.282 15 H -0.204 1.204 16 H -0.205 1.205 17 H -0.196 1.196 18 C -0.229 4.229 19 C -0.227 4.227 20 N -0.063 5.063 21 N -0.148 5.148 22 H 0.078 0.922 23 H 0.089 0.911 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.227 0.773 29 H 0.196 0.804 30 H 0.084 0.916 31 H 0.171 0.829 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.326 7.151 1.995 9.137 hybrid contribution 0.902 -0.851 1.355 1.837 sum -4.423 6.300 3.350 8.395 Atomic orbital electron populations 1.22284 0.94669 1.02952 1.02182 1.19116 0.92653 0.90983 0.79522 1.21720 1.02054 0.92921 1.02201 1.86501 1.77767 1.29363 1.42653 1.22399 0.90942 1.08603 1.00278 1.23224 1.00347 1.02660 0.90804 1.47647 1.08102 1.33917 1.14452 1.22454 0.84642 0.95214 0.96820 1.19035 0.97929 0.90129 0.90091 1.20547 1.16067 1.06846 1.08735 0.91741 1.24958 0.94744 0.95080 0.98456 1.69636 1.09599 1.35282 1.37591 0.86568 0.78658 0.79268 0.83693 1.20384 1.20545 1.19565 1.23041 0.98326 1.01820 0.99758 1.22890 0.90921 1.02061 1.06830 1.78154 0.87719 1.18780 1.21659 1.74924 1.26591 1.12184 1.01112 0.92203 0.91138 0.92013 0.91791 0.91167 0.91630 0.77254 0.80420 0.91603 0.82887 0.92128 0.91405 0.89894 0.90565 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 8.35 37.16 0.31 -1.85 16 2 C 0.22 3.27 1.31 -91.77 -0.12 3.15 16 3 C -0.13 -1.67 8.77 37.16 0.33 -1.35 16 4 O -0.56 -8.40 12.94 -35.23 -0.46 -8.85 16 5 C -0.08 -1.52 5.80 -82.78 -0.48 -2.00 16 6 C -0.02 -0.33 11.37 -17.05 -0.19 -0.52 16 7 N -0.25 -5.33 3.43 -61.26 -0.21 -5.54 16 8 C 0.13 2.79 6.15 -4.04 -0.02 2.77 16 9 C 0.03 0.69 1.93 -155.66 -0.30 0.39 16 10 C -0.49 -12.60 9.00 -34.44 -0.31 -12.91 16 11 H 0.06 1.73 7.89 -52.49 -0.41 1.31 16 12 C 0.07 1.76 5.10 -17.82 -0.09 1.67 16 13 N -0.88 -22.21 10.93 55.43 0.61 -21.60 16 14 Si 0.89 20.02 29.58 -169.99 -5.03 14.99 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 C -0.19 -4.11 9.88 -26.73 -0.26 -4.37 16 19 C -0.19 -4.13 9.16 -26.73 -0.24 -4.38 16 20 N -0.08 -1.83 11.57 60.35 0.70 -1.13 16 21 N -0.28 -5.79 11.79 33.29 0.39 -5.40 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.38 5.00 9.04 45.56 0.41 5.41 16 29 H 0.18 3.18 8.06 -52.48 -0.42 2.76 16 30 H 0.07 1.32 7.94 -51.93 -0.41 0.91 16 31 H 0.15 3.53 5.17 -51.93 -0.27 3.26 16 32 H 0.27 6.43 8.32 -40.82 -0.34 6.10 16 33 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 34 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 35 H 0.08 1.67 8.14 -51.92 -0.42 1.25 16 36 H 0.08 1.75 7.47 -51.93 -0.39 1.36 16 LS Contribution 305.45 15.07 4.60 4.60 Total: -1.00 -27.57 305.45 -5.22 -32.78 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -4.43 Total: 9.54 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -1.39 Total: -19.39 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 1.49 Total: -33.67 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.46 Total: -8.85 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.57 -5.22 -32.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849145005.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.340 kcal (2) G-P(sol) polarization free energy of solvation -27.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds