Wall clock time and date at job start Sun Mar 29 2020 23:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46848 * 2 1 4 4 O 1.42895 * 109.46875 * 119.99704 * 2 1 3 5 5 C 1.50700 * 109.47098 * 239.99868 * 2 1 3 6 6 C 1.35350 * 126.74908 * 185.00184 * 5 2 1 7 7 N 1.35306 * 106.17462 * 179.97438 * 6 5 2 8 8 C 1.46508 * 125.86932 * 180.02562 * 7 6 5 9 9 C 1.52992 * 109.47160 * 123.57108 * 8 7 6 10 10 C 1.50702 * 115.55308 * 279.11450 * 9 8 7 11 11 H 1.08001 * 120.00289 * 144.78544 * 10 9 8 12 12 C 1.37881 * 119.99582 * 324.79520 * 10 9 8 13 13 N 1.31509 * 120.00325 * 341.00321 * 12 10 9 14 14 Si 1.86801 * 119.99637 * 161.01334 * 12 10 9 15 15 H 1.48497 * 109.47243 * 89.99547 * 14 12 10 16 16 H 1.48509 * 109.46946 * 209.99624 * 14 12 10 17 17 H 1.48502 * 109.47215 * 329.99215 * 14 12 10 18 18 C 1.53001 * 117.49636 * 133.41211 * 9 8 7 19 19 C 1.53000 * 117.49923 * 64.78996 * 9 8 7 20 20 N 1.28713 * 108.26321 * 359.97438 * 7 6 5 21 21 N 1.28625 * 110.18125 * 359.72125 * 20 7 6 22 22 H 1.08998 * 109.47822 * 300.00460 * 1 2 3 23 23 H 1.09005 * 109.47182 * 60.00449 * 1 2 3 24 24 H 1.09006 * 109.47242 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46841 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46737 * 299.99215 * 3 2 1 27 27 H 1.08995 * 109.47229 * 59.99981 * 3 2 1 28 28 H 0.96703 * 114.00480 * 60.00128 * 4 2 1 29 29 H 1.08005 * 126.91042 * 359.96241 * 6 5 2 30 30 H 1.09000 * 109.46895 * 243.57573 * 8 7 6 31 31 H 1.09006 * 109.46806 * 3.56790 * 8 7 6 32 32 H 0.96998 * 120.00207 * 185.02015 * 13 12 10 33 33 H 1.08998 * 117.50277 * 359.97438 * 18 9 8 34 34 H 1.08997 * 117.50052 * 145.02157 * 18 9 8 35 35 H 1.09008 * 117.49474 * 214.97829 * 19 9 8 36 36 H 1.08996 * 117.50087 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0324 -0.7104 -1.2304 6 6 3.3209 -0.9940 -1.5325 7 7 3.2965 -1.6348 -2.7240 8 6 4.4640 -2.1377 -3.4523 9 6 4.2939 -3.6349 -3.7170 10 6 4.6392 -4.5422 -2.5643 11 1 4.0754 -5.4491 -2.4032 12 6 5.6750 -4.2143 -1.7154 13 7 6.5876 -3.3470 -2.0956 14 14 5.7821 -5.0022 -0.0250 15 1 6.5781 -6.2528 -0.1114 16 1 6.4384 -4.0618 0.9187 17 1 4.4151 -5.3180 0.4614 18 6 4.5938 -4.1411 -5.1294 19 6 3.1478 -4.0642 -4.6352 20 7 2.0712 -1.7275 -3.1071 21 7 1.2920 -1.1913 -2.2355 22 1 -0.3635 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6766 1.9563 0.8899 28 1 1.7210 -1.5952 1.2330 29 1 4.1931 -0.7564 -0.9414 30 1 4.5558 -1.6090 -4.4011 31 1 5.3621 -1.9737 -2.8567 32 1 7.3550 -3.1707 -1.5292 33 1 4.9118 -3.4074 -5.8701 34 1 5.0410 -5.1304 -5.2251 35 1 2.6438 -5.0031 -4.4056 36 1 2.5147 -3.2801 -5.0503 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849145005.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:07 Heat of formation + Delta-G solvation = 48.081624 kcal Electronic energy + Delta-G solvation = -19076.346419 eV Core-core repulsion = 16176.869564 eV Total energy + Delta-G solvation = -2899.476855 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.09600 -39.12260 -38.53366 -34.73757 -34.37762 -33.34081 -31.06076 -28.79694 -28.10335 -27.53802 -24.22197 -23.10793 -22.82746 -21.58046 -20.83126 -18.85490 -18.00366 -17.36893 -17.08892 -16.67998 -15.87929 -15.66723 -15.59508 -15.26052 -14.80273 -13.82448 -13.65591 -13.52143 -13.21528 -13.11719 -12.96918 -12.87830 -12.69748 -12.55409 -12.41449 -12.15231 -12.04059 -11.76998 -11.69183 -11.27600 -11.10503 -10.81782 -10.63486 -10.19404 -10.07559 -8.27999 -6.29730 0.83266 1.32841 1.40166 1.48111 1.57248 1.69705 2.32202 2.83548 3.27591 3.37162 3.59657 3.86662 4.05151 4.07918 4.13991 4.17759 4.43308 4.47559 4.56230 4.74101 4.81981 4.88854 4.92212 4.94207 4.98673 5.04398 5.16790 5.23371 5.30722 5.36502 5.40847 5.50849 5.74674 5.88340 6.25183 6.62835 6.70749 7.28928 7.68597 8.74600 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.020000 B = 0.008579 C = 0.006824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.684096 B = 3262.891384 C = 4102.096576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.217 3.783 3 C -0.130 4.130 4 O -0.563 6.563 5 C -0.072 4.072 6 C -0.029 4.029 7 N -0.256 5.256 8 C 0.136 3.864 9 C 0.006 3.994 10 C -0.513 4.513 11 H 0.044 0.956 12 C 0.043 3.957 13 N -0.892 5.892 14 Si 0.938 3.062 15 H -0.276 1.276 16 H -0.271 1.271 17 H -0.280 1.280 18 C -0.180 4.180 19 C -0.180 4.180 20 N -0.109 5.109 21 N -0.292 5.292 22 H 0.083 0.917 23 H 0.067 0.933 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.386 0.614 29 H 0.190 0.810 30 H 0.081 0.919 31 H 0.143 0.857 32 H 0.273 0.727 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.912 7.992 3.734 10.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.174 3.826 3 C -0.188 4.188 4 O -0.369 6.369 5 C -0.212 4.212 6 C -0.182 4.182 7 N -0.048 5.048 8 C 0.016 3.984 9 C 0.005 3.995 10 C -0.550 4.550 11 H 0.062 0.938 12 C -0.158 4.158 13 N -0.529 5.529 14 Si 0.764 3.236 15 H -0.202 1.202 16 H -0.195 1.195 17 H -0.206 1.206 18 C -0.219 4.219 19 C -0.218 4.218 20 N -0.088 5.088 21 N -0.159 5.159 22 H 0.102 0.898 23 H 0.086 0.914 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.235 0.765 29 H 0.207 0.793 30 H 0.099 0.901 31 H 0.160 0.840 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.420 8.185 2.810 10.211 hybrid contribution 0.916 -1.182 1.121 1.869 sum -4.503 7.004 3.930 9.207 Atomic orbital electron populations 1.22237 0.93335 1.02669 1.03257 1.19395 0.93692 0.91581 0.77911 1.21748 1.01882 0.91563 1.03565 1.86494 1.78030 1.30016 1.42384 1.23015 0.90291 1.07306 1.00603 1.23595 1.01411 1.02720 0.90499 1.47626 1.07832 1.34288 1.15034 1.22255 0.84464 0.94368 0.97319 1.19119 0.99305 0.90845 0.90238 1.20648 1.16583 1.07065 1.10657 0.93800 1.25396 0.94404 0.95625 1.00385 1.69687 1.09626 1.35421 1.38194 0.85849 0.77989 0.78851 0.80890 1.20157 1.19528 1.20572 1.23050 0.97834 1.01957 0.99035 1.22803 0.90996 1.01727 1.06260 1.78125 0.88069 1.20015 1.22639 1.74894 1.26809 1.12437 1.01721 0.89804 0.91352 0.93000 0.92148 0.90546 0.89557 0.76515 0.79251 0.90126 0.83998 0.91706 0.89254 0.90471 0.91368 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 8.35 71.98 0.60 -3.22 16 2 C 0.22 6.00 1.31 -11.54 -0.02 5.99 16 3 C -0.13 -2.98 8.77 71.98 0.63 -2.35 16 4 O -0.56 -15.80 12.94 -148.98 -1.93 -17.73 16 5 C -0.07 -2.56 5.80 41.60 0.24 -2.32 16 6 C -0.03 -1.11 11.37 83.49 0.95 -0.16 16 7 N -0.26 -10.80 3.43 -347.72 -1.19 -11.99 16 8 C 0.14 5.84 6.15 86.37 0.53 6.37 16 9 C 0.01 0.29 1.93 -52.93 -0.10 0.19 16 10 C -0.51 -26.81 9.00 25.60 0.23 -26.58 16 11 H 0.04 2.40 7.89 -2.91 -0.02 2.38 16 12 C 0.04 2.17 5.10 84.66 0.43 2.61 16 13 N -0.89 -44.18 10.93 21.45 0.23 -43.94 16 14 Si 0.94 40.69 29.58 68.60 2.03 42.72 16 15 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 18 C -0.18 -7.61 9.88 30.60 0.30 -7.31 16 19 C -0.18 -7.81 9.16 30.59 0.28 -7.53 16 20 N -0.11 -4.75 11.57 37.02 0.43 -4.32 16 21 N -0.29 -11.84 11.79 -48.60 -0.57 -12.41 16 22 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 24 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.06 1.42 8.12 -2.39 -0.02 1.40 16 26 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.39 9.56 9.04 -74.06 -0.67 8.89 16 29 H 0.19 6.60 8.06 -2.91 -0.02 6.57 16 30 H 0.08 3.16 7.94 -2.39 -0.02 3.14 16 31 H 0.14 6.48 5.17 -2.38 -0.01 6.47 16 32 H 0.27 12.78 8.32 -92.71 -0.77 12.01 16 33 H 0.09 3.35 8.08 -2.39 -0.02 3.33 16 34 H 0.08 3.31 8.14 -2.39 -0.02 3.30 16 35 H 0.07 3.02 8.14 -2.38 -0.02 3.00 16 36 H 0.09 3.71 7.47 -2.39 -0.02 3.69 16 Total: -1.00 -56.89 305.45 3.49 -53.40 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.41 Total: 28.59 kcal Atomic # 6 Polarization: -38.40 SS G_CDS: 4.08 Total: -34.31 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: -1.10 Total: -72.66 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -1.93 Total: -17.73 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -56.89 3.49 -53.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849145005.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.479 kcal (2) G-P(sol) polarization free energy of solvation -56.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds