Wall clock time and date at job start Sun Mar 29 2020 23:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35317 * 126.12865 * 2 1 4 4 C 1.39867 * 107.92477 * 179.97438 * 3 2 1 5 5 N 1.30843 * 108.19897 * 359.74169 * 4 3 2 6 6 N 1.34947 * 126.12853 * 179.97438 * 2 1 3 7 7 C 1.46498 * 126.03917 * 0.02562 * 6 2 1 8 8 C 1.50702 * 109.47558 * 89.99403 * 7 6 2 9 9 O 1.21282 * 119.99614 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00153 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99811 * 0.02562 * 10 8 7 12 12 C 1.46497 * 119.99848 * 180.02562 * 10 8 7 13 13 H 1.08996 * 109.47049 * 359.97438 * 12 10 8 14 14 C 1.52997 * 109.47188 * 120.00098 * 12 10 8 15 15 C 1.50706 * 109.46582 * 239.99950 * 12 10 8 16 16 H 1.07999 * 120.00196 * 359.97438 * 15 12 10 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 12 10 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47474 * 90.00322 * 19 17 15 21 21 H 1.48510 * 109.47116 * 210.00055 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99887 * 19 17 15 23 23 H 1.08998 * 109.46668 * 270.02122 * 1 2 3 24 24 H 1.08995 * 109.46961 * 30.02028 * 1 2 3 25 25 H 1.08999 * 109.47400 * 150.02192 * 1 2 3 26 26 H 1.08007 * 126.03919 * 359.97438 * 3 2 1 27 27 H 1.07994 * 125.90440 * 180.02562 * 4 3 2 28 28 H 1.09009 * 109.46864 * 329.99369 * 7 6 2 29 29 H 1.08996 * 109.47233 * 210.00297 * 7 6 2 30 30 H 1.09005 * 109.46851 * 270.00168 * 11 10 8 31 31 H 1.08997 * 109.47129 * 29.99442 * 11 10 8 32 32 H 1.08993 * 109.46804 * 150.00082 * 11 10 8 33 33 H 1.09002 * 109.47153 * 299.99573 * 14 12 10 34 34 H 1.09001 * 109.46832 * 179.97438 * 14 12 10 35 35 H 1.09004 * 109.47261 * 59.99745 * 14 12 10 36 36 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6560 0.0006 5 7 3.6334 -0.6524 0.0065 6 7 2.3026 -1.0900 0.0005 7 6 1.8540 -2.4846 0.0006 8 6 1.7005 -2.9631 -1.4202 9 8 1.9425 -2.2131 -2.3421 10 7 1.2943 -4.2244 -1.6663 11 6 1.0014 -5.1301 -0.5526 12 6 1.1456 -4.6897 -3.0475 13 1 1.4058 -3.8829 -3.7326 14 6 2.0741 -5.8820 -3.2867 15 6 -0.2822 -5.1092 -3.2851 16 1 -1.0063 -5.0369 -2.4871 17 6 -0.6640 -5.5854 -4.5215 18 7 0.2179 -5.6739 -5.4931 19 14 -2.4340 -6.1047 -4.8163 20 1 -3.2180 -4.9396 -5.2991 21 1 -2.4700 -7.1828 -5.8372 22 1 -3.0210 -6.6049 -3.5473 23 1 -0.3632 0.0004 1.0277 24 1 -0.3633 0.8898 -0.5141 25 1 -0.3634 -0.8902 -0.5135 26 1 1.9741 2.1211 -0.0004 27 1 4.5084 1.2891 0.0011 28 1 0.8953 -2.5578 0.5142 29 1 2.5897 -3.1029 0.5148 30 1 1.9070 -5.6699 -0.2755 31 1 0.6468 -4.5530 0.3014 32 1 0.2327 -5.8411 -0.8552 33 1 3.1068 -5.5785 -3.1148 34 1 1.9631 -6.2284 -4.3142 35 1 1.8136 -6.6887 -2.6015 36 1 -0.0507 -6.0092 -6.3628 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859194759.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:30 Heat of formation + Delta-G solvation = 45.915986 kcal Electronic energy + Delta-G solvation = -18711.933682 eV Core-core repulsion = 15812.362918 eV Total energy + Delta-G solvation = -2899.570764 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07303 -39.00940 -35.45343 -33.40065 -32.76725 -31.85105 -29.65572 -27.05566 -26.75781 -26.12502 -25.26515 -21.78298 -20.84156 -19.68151 -18.40546 -16.91851 -16.66338 -16.12184 -15.34066 -15.16142 -14.58404 -14.14063 -13.88474 -13.60321 -12.97849 -12.83621 -12.72133 -12.55525 -12.50623 -11.96207 -11.85173 -11.69939 -11.58447 -11.09450 -10.91046 -10.76216 -10.40693 -10.30429 -10.22785 -9.55225 -9.23183 -8.83371 -8.48661 -8.24894 -7.71143 -6.12642 -4.21574 2.03646 2.62111 3.05847 3.16117 3.23070 3.30025 3.31061 3.85658 4.34226 4.69227 4.78760 4.95335 5.12223 5.17194 5.18876 5.34554 5.50646 5.58031 5.80501 5.87719 5.91181 5.94360 6.25486 6.32352 6.69643 6.77245 6.85468 6.99835 7.14719 7.33713 7.45747 7.64582 7.93460 7.94849 8.12318 8.39552 8.73960 8.90931 9.44944 10.92744 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.031037 B = 0.005610 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.944313 B = 4990.190325 C = 5261.787327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.096 3.904 3 C -0.282 4.282 4 C 0.044 3.956 5 N -0.291 5.291 6 N -0.349 5.349 7 C 0.112 3.888 8 C 0.486 3.514 9 O -0.532 6.532 10 N -0.589 5.589 11 C 0.079 3.921 12 C 0.259 3.741 13 H 0.063 0.937 14 C -0.146 4.146 15 C -0.528 4.528 16 H 0.060 0.940 17 C 0.065 3.935 18 N -0.886 5.886 19 Si 0.900 3.100 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.144 0.856 27 H 0.180 0.820 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.011 0.989 34 H 0.094 0.906 35 H 0.030 0.970 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 6.296 13.171 14.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.031 4.031 3 C -0.311 4.311 4 C -0.142 4.142 5 N -0.111 5.111 6 N -0.131 5.131 7 C -0.014 4.014 8 C 0.270 3.730 9 O -0.409 6.409 10 N -0.322 5.322 11 C -0.065 4.065 12 C 0.159 3.841 13 H 0.080 0.920 14 C -0.205 4.205 15 C -0.567 4.567 16 H 0.078 0.922 17 C -0.138 4.138 18 N -0.524 5.524 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 H 0.096 0.904 24 H 0.104 0.896 25 H 0.091 0.909 26 H 0.161 0.839 27 H 0.197 0.803 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.030 0.970 34 H 0.112 0.888 35 H 0.049 0.951 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.284 5.403 12.467 13.648 hybrid contribution -1.419 0.276 -0.244 1.467 sum -0.135 5.679 12.222 13.478 Atomic orbital electron populations 1.20463 0.87605 1.04430 1.02794 1.21056 0.94640 0.87289 1.00137 1.21125 0.92385 0.98623 1.18959 1.23738 0.97987 0.92215 1.00296 1.77335 0.96569 1.13090 1.24155 1.48003 1.03930 1.04742 1.56450 1.21616 1.02349 0.79673 0.97762 1.20493 0.79042 0.83145 0.90271 1.90721 1.50378 1.54407 1.45438 1.48265 1.63905 1.10293 1.09701 1.21680 1.01238 0.94912 0.88676 1.18975 0.95190 0.93968 0.75986 0.91960 1.22081 0.95502 0.98674 1.04207 1.21283 0.94096 1.43834 0.97471 0.92197 1.24904 0.97726 0.95351 0.95784 1.69881 1.33688 1.45835 1.02998 0.86477 0.84456 0.78304 0.78026 1.20593 1.21072 1.19890 0.90385 0.89587 0.90875 0.83854 0.80308 0.86717 0.86465 0.93456 0.92974 0.89587 0.96973 0.88772 0.95065 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 9.90 36.00 0.36 -0.75 16 2 C 0.10 1.46 6.93 -82.27 -0.57 0.89 16 3 C -0.28 -3.99 10.72 -40.01 -0.43 -4.42 16 4 C 0.04 0.65 12.03 -17.36 -0.21 0.44 16 5 N -0.29 -5.20 12.58 30.62 0.39 -4.81 16 6 N -0.35 -5.93 3.10 -58.31 -0.18 -6.11 16 7 C 0.11 1.71 5.10 -5.19 -0.03 1.68 16 8 C 0.49 10.05 7.74 -10.98 -0.09 9.96 16 9 O -0.53 -13.66 15.76 5.56 0.09 -13.57 16 10 N -0.59 -12.20 2.75 -175.26 -0.48 -12.68 16 11 C 0.08 1.22 9.24 59.85 0.55 1.77 16 12 C 0.26 6.55 2.64 -69.08 -0.18 6.37 16 13 H 0.06 1.86 6.90 -51.93 -0.36 1.50 16 14 C -0.15 -3.49 8.97 37.16 0.33 -3.16 16 15 C -0.53 -13.93 7.99 -34.44 -0.28 -14.21 16 16 H 0.06 1.53 7.33 -52.49 -0.38 1.14 16 17 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 18 N -0.89 -24.93 11.32 55.43 0.63 -24.31 16 19 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.07 0.96 7.72 -51.93 -0.40 0.56 16 26 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 27 H 0.18 1.96 8.06 -52.49 -0.42 1.54 16 28 H 0.12 1.35 6.92 -51.92 -0.36 0.99 16 29 H 0.12 1.56 8.11 -51.93 -0.42 1.14 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.60 6.44 -51.93 -0.33 0.27 16 32 H 0.09 1.42 7.02 -51.93 -0.36 1.06 16 33 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 35 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 304.08 15.07 4.58 4.58 Total: -1.00 -33.90 304.08 -5.64 -39.54 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.01 Total: 1.52 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -0.63 Total: 0.23 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.35 Total: -47.91 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.90 -5.64 -39.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859194759.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.458 kcal (2) G-P(sol) polarization free energy of solvation -33.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds