Wall clock time and date at job start Sun Mar 29 2020 23:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35317 * 126.12865 * 2 1 4 4 C 1.39867 * 107.92477 * 179.97438 * 3 2 1 5 5 N 1.30843 * 108.19897 * 359.74169 * 4 3 2 6 6 N 1.34947 * 126.12853 * 179.97438 * 2 1 3 7 7 C 1.46498 * 126.03917 * 0.02562 * 6 2 1 8 8 C 1.50702 * 109.47558 * 89.99403 * 7 6 2 9 9 O 1.21282 * 119.99614 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00153 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99811 * 0.02562 * 10 8 7 12 12 C 1.46497 * 119.99848 * 180.02562 * 10 8 7 13 13 H 1.08996 * 109.47049 * 359.97438 * 12 10 8 14 14 C 1.52997 * 109.47188 * 120.00098 * 12 10 8 15 15 C 1.50706 * 109.46582 * 239.99950 * 12 10 8 16 16 H 1.07999 * 120.00196 * 359.97438 * 15 12 10 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 12 10 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47474 * 90.00322 * 19 17 15 21 21 H 1.48510 * 109.47116 * 210.00055 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99887 * 19 17 15 23 23 H 1.08998 * 109.46668 * 270.02122 * 1 2 3 24 24 H 1.08995 * 109.46961 * 30.02028 * 1 2 3 25 25 H 1.08999 * 109.47400 * 150.02192 * 1 2 3 26 26 H 1.08007 * 126.03919 * 359.97438 * 3 2 1 27 27 H 1.07994 * 125.90440 * 180.02562 * 4 3 2 28 28 H 1.09009 * 109.46864 * 329.99369 * 7 6 2 29 29 H 1.08996 * 109.47233 * 210.00297 * 7 6 2 30 30 H 1.09005 * 109.46851 * 270.00168 * 11 10 8 31 31 H 1.08997 * 109.47129 * 29.99442 * 11 10 8 32 32 H 1.08993 * 109.46804 * 150.00082 * 11 10 8 33 33 H 1.09002 * 109.47153 * 299.99573 * 14 12 10 34 34 H 1.09001 * 109.46832 * 179.97438 * 14 12 10 35 35 H 1.09004 * 109.47261 * 59.99745 * 14 12 10 36 36 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6560 0.0006 5 7 3.6334 -0.6524 0.0065 6 7 2.3026 -1.0900 0.0005 7 6 1.8540 -2.4846 0.0006 8 6 1.7005 -2.9631 -1.4202 9 8 1.9425 -2.2131 -2.3421 10 7 1.2943 -4.2244 -1.6663 11 6 1.0014 -5.1301 -0.5526 12 6 1.1456 -4.6897 -3.0475 13 1 1.4058 -3.8829 -3.7326 14 6 2.0741 -5.8820 -3.2867 15 6 -0.2822 -5.1092 -3.2851 16 1 -1.0063 -5.0369 -2.4871 17 6 -0.6640 -5.5854 -4.5215 18 7 0.2179 -5.6739 -5.4931 19 14 -2.4340 -6.1047 -4.8163 20 1 -3.2180 -4.9396 -5.2991 21 1 -2.4700 -7.1828 -5.8372 22 1 -3.0210 -6.6049 -3.5473 23 1 -0.3632 0.0004 1.0277 24 1 -0.3633 0.8898 -0.5141 25 1 -0.3634 -0.8902 -0.5135 26 1 1.9741 2.1211 -0.0004 27 1 4.5084 1.2891 0.0011 28 1 0.8953 -2.5578 0.5142 29 1 2.5897 -3.1029 0.5148 30 1 1.9070 -5.6699 -0.2755 31 1 0.6468 -4.5530 0.3014 32 1 0.2327 -5.8411 -0.8552 33 1 3.1068 -5.5785 -3.1148 34 1 1.9631 -6.2284 -4.3142 35 1 1.8136 -6.6887 -2.6015 36 1 -0.0507 -6.0092 -6.3628 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859194759.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:30 Heat of formation + Delta-G solvation = 22.830423 kcal Electronic energy + Delta-G solvation = -18712.934747 eV Core-core repulsion = 15812.362918 eV Total energy + Delta-G solvation = -2900.571830 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.22985 -40.61047 -37.22869 -34.99829 -34.29437 -32.95512 -31.47508 -28.33069 -27.80300 -27.54228 -27.30916 -23.44335 -22.04082 -21.04294 -19.88648 -18.61359 -18.20363 -17.62013 -17.03071 -16.59749 -16.17581 -15.52061 -15.12916 -14.81048 -14.57965 -14.26768 -14.01019 -13.80113 -13.55914 -13.54222 -13.18460 -13.08773 -12.89210 -12.85981 -12.74162 -12.69706 -12.22168 -12.10673 -11.55037 -11.24306 -11.05297 -10.55620 -10.12678 -9.41462 -9.39985 -8.16302 -6.33595 0.87144 1.41874 1.43013 1.51148 1.53482 1.62596 1.97244 2.29764 2.47791 3.12366 3.53654 3.65085 3.78820 4.03140 4.17191 4.34034 4.44376 4.70427 4.71275 4.73618 4.81758 4.84675 4.85760 5.01571 5.01844 5.04178 5.28367 5.43842 5.51649 5.63088 5.78090 5.97332 6.10540 6.12495 6.71609 6.74531 6.79700 7.23613 7.40977 8.88566 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.031037 B = 0.005610 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.944313 B = 4990.190325 C = 5261.787327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.081 3.919 3 C -0.289 4.289 4 C 0.041 3.959 5 N -0.339 5.339 6 N -0.367 5.367 7 C 0.123 3.877 8 C 0.478 3.522 9 O -0.596 6.596 10 N -0.594 5.594 11 C 0.072 3.928 12 C 0.262 3.738 13 H 0.002 0.998 14 C -0.132 4.132 15 C -0.536 4.536 16 H 0.068 0.932 17 C 0.012 3.988 18 N -0.921 5.921 19 Si 0.968 3.032 20 H -0.283 1.283 21 H -0.283 1.283 22 H -0.256 1.256 23 H 0.111 0.889 24 H 0.097 0.903 25 H 0.056 0.944 26 H 0.171 0.829 27 H 0.210 0.790 28 H 0.156 0.844 29 H 0.141 0.859 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.014 0.986 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.968 6.371 15.717 16.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.046 4.046 3 C -0.318 4.318 4 C -0.144 4.144 5 N -0.159 5.159 6 N -0.150 5.150 7 C -0.002 4.002 8 C 0.265 3.735 9 O -0.477 6.477 10 N -0.325 5.325 11 C -0.070 4.070 12 C 0.160 3.840 13 H 0.020 0.980 14 C -0.191 4.191 15 C -0.574 4.574 16 H 0.086 0.914 17 C -0.187 4.187 18 N -0.560 5.560 19 Si 0.793 3.207 20 H -0.209 1.209 21 H -0.209 1.209 22 H -0.180 1.180 23 H 0.129 0.871 24 H 0.116 0.884 25 H 0.075 0.925 26 H 0.189 0.811 27 H 0.227 0.773 28 H 0.174 0.826 29 H 0.159 0.841 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.094 0.906 33 H 0.033 0.967 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.152 5.458 15.073 16.031 hybrid contribution -0.926 0.327 -1.039 1.430 sum -1.077 5.785 14.034 15.217 Atomic orbital electron populations 1.20572 0.85405 1.04150 1.04812 1.21756 0.96243 0.87218 0.99353 1.21574 0.92032 0.99877 1.18298 1.24378 0.99614 0.91802 0.98625 1.77260 0.97762 1.14696 1.26207 1.48179 1.03957 1.05456 1.57374 1.21700 1.05132 0.79670 0.93732 1.21489 0.77462 0.82344 0.92190 1.90684 1.52998 1.56037 1.47998 1.48243 1.63662 1.11376 1.09231 1.22009 1.02154 0.94736 0.88125 1.18536 0.95193 0.92235 0.78020 0.97988 1.21871 0.95440 0.98727 1.03018 1.21568 0.94690 1.43335 0.97830 0.91357 1.25801 1.01912 0.95440 0.95576 1.70042 1.35792 1.46744 1.03397 0.85408 0.79204 0.77633 0.78480 1.20896 1.20871 1.18014 0.87081 0.88433 0.92537 0.81124 0.77343 0.82618 0.84130 0.91363 0.88340 0.90620 0.96656 0.91497 0.92985 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.92 9.90 71.23 0.71 -1.21 16 2 C 0.08 2.32 6.93 41.40 0.29 2.61 16 3 C -0.29 -7.66 10.72 21.99 0.24 -7.42 16 4 C 0.04 1.18 12.03 85.23 1.03 2.21 16 5 N -0.34 -11.88 12.58 -57.03 -0.72 -12.60 16 6 N -0.37 -12.00 3.10 -338.40 -1.05 -13.05 16 7 C 0.12 3.49 5.10 85.63 0.44 3.93 16 8 C 0.48 19.73 7.74 87.66 0.68 20.41 16 9 O -0.60 -31.82 15.76 -3.04 -0.05 -31.87 16 10 N -0.59 -24.30 2.75 -826.79 -2.28 -26.58 16 11 C 0.07 2.00 9.24 127.77 1.18 3.18 16 12 C 0.26 13.64 2.64 44.25 0.12 13.76 16 13 H 0.00 0.14 6.90 -2.39 -0.02 0.12 16 14 C -0.13 -6.43 8.97 71.98 0.65 -5.79 16 15 C -0.54 -28.43 7.99 25.60 0.20 -28.23 16 16 H 0.07 3.42 7.33 -2.91 -0.02 3.40 16 17 C 0.01 0.66 5.30 84.66 0.45 1.10 16 18 N -0.92 -53.35 11.32 21.45 0.24 -53.11 16 19 Si 0.97 42.18 29.54 68.60 2.03 44.21 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 23 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.06 1.38 7.72 -2.39 -0.02 1.36 16 26 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 27 H 0.21 4.22 8.06 -2.91 -0.02 4.20 16 28 H 0.16 3.05 6.92 -2.38 -0.02 3.03 16 29 H 0.14 3.31 8.11 -2.39 -0.02 3.30 16 30 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.10 1.83 6.44 -2.39 -0.02 1.82 16 32 H 0.08 2.31 7.02 -2.39 -0.02 2.29 16 33 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 3.64 6.07 -2.39 -0.01 3.62 16 35 H 0.05 2.25 7.67 -2.38 -0.02 2.23 16 36 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -78.35 304.08 5.21 -73.13 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 1.07 Total: 15.30 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 5.96 Total: 4.55 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -3.80 Total: -105.33 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.05 Total: -31.87 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -78.35 5.21 -73.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859194759.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.963 kcal (2) G-P(sol) polarization free energy of solvation -78.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds