Wall clock time and date at job start Sun Mar 29 2020 22:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39867 * 125.89909 * 2 1 4 4 C 1.35323 * 107.92177 * 179.86732 * 3 2 1 5 5 N 1.34952 * 107.74241 * 0.39465 * 4 3 2 6 6 C 1.46505 * 126.03405 * 179.75723 * 5 4 3 7 7 C 1.52996 * 109.47244 * 124.97321 * 6 5 4 8 8 H 1.09006 * 109.47277 * 54.99788 * 7 6 5 9 9 C 1.52998 * 109.47144 * 294.99882 * 7 6 5 10 10 C 1.50698 * 109.47080 * 174.99385 * 7 6 5 11 11 O 1.21293 * 119.99847 * 6.72486 * 10 7 6 12 12 N 1.34778 * 120.00019 * 186.71670 * 10 7 6 13 13 C 1.46500 * 120.00058 * 183.32589 * 12 10 7 14 14 C 1.37093 * 120.00034 * 3.32808 * 12 10 7 15 15 H 1.08001 * 120.00397 * 8.18629 * 14 12 10 16 16 C 1.38952 * 120.00401 * 188.19592 * 14 12 10 17 17 N 1.31411 * 119.99370 * 6.58480 * 16 14 12 18 18 Si 1.86795 * 120.00423 * 186.59305 * 16 14 12 19 19 H 1.48505 * 109.46871 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47268 * 119.99433 * 18 16 14 21 21 H 1.48504 * 109.46819 * 239.99540 * 18 16 14 22 22 N 1.30844 * 125.89895 * 180.31131 * 2 1 3 23 23 H 1.08990 * 109.47129 * 269.71066 * 1 2 3 24 24 H 1.09001 * 109.47171 * 29.71591 * 1 2 3 25 25 H 1.09003 * 109.46873 * 149.71063 * 1 2 3 26 26 H 1.07999 * 126.04268 * 359.97438 * 3 2 1 27 27 H 1.07997 * 126.12717 * 180.15401 * 4 3 2 28 28 H 1.09005 * 109.46687 * 244.97299 * 6 5 4 29 29 H 1.08993 * 109.47229 * 4.96929 * 6 5 4 30 30 H 1.09005 * 109.47142 * 305.21266 * 9 7 6 31 31 H 1.08997 * 109.47474 * 65.21775 * 9 7 6 32 32 H 1.08997 * 109.47182 * 185.21354 * 9 7 6 33 33 H 1.09000 * 109.46942 * 355.03454 * 13 12 10 34 34 H 1.09002 * 109.46861 * 115.03255 * 13 12 10 35 35 H 1.09000 * 109.47185 * 235.03317 * 13 12 10 36 36 H 0.97008 * 120.00001 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0030 5 7 3.6087 -0.6341 -0.0040 6 6 4.7900 -1.5008 -0.0088 7 6 4.7123 -2.4753 1.1681 8 1 3.7710 -3.0232 1.1247 9 6 4.7881 -1.6951 2.4820 10 6 5.8625 -3.4461 1.0931 11 8 6.7318 -3.2933 0.2611 12 7 5.9253 -4.4839 1.9507 13 6 7.0797 -5.3856 1.9261 14 6 4.9089 -4.6959 2.8459 15 1 4.0002 -4.1161 2.7786 16 6 5.0478 -5.6566 3.8402 17 7 6.1981 -6.2705 4.0044 18 14 3.5996 -6.0756 4.9431 19 1 2.4276 -5.2497 4.5562 20 1 3.2631 -7.5142 4.7931 21 1 3.9570 -5.7955 6.3570 22 7 2.2742 -1.0599 -0.0058 23 1 -0.3633 -0.0052 1.0276 24 1 -0.3633 0.8925 -0.5094 25 1 -0.3633 -0.8874 -0.5183 26 1 1.9923 2.1598 -0.0004 27 1 4.4891 1.3485 0.0061 28 1 4.8254 -2.0614 -0.9430 29 1 5.6885 -0.8908 0.0831 30 1 5.6849 -1.0754 2.4854 31 1 3.9074 -1.0603 2.5790 32 1 4.8261 -2.3938 3.3178 33 1 7.7352 -5.1142 1.0986 34 1 7.6265 -5.3014 2.8653 35 1 6.7365 -6.4119 1.7963 36 1 6.2950 -6.9415 4.6983 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865067956.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:45 Heat of formation + Delta-G solvation = 46.665213 kcal Electronic energy + Delta-G solvation = -18652.889986 eV Core-core repulsion = 15753.351711 eV Total energy + Delta-G solvation = -2899.538276 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.96632 -38.81069 -35.14016 -34.49536 -32.10722 -31.40085 -29.72713 -28.58349 -26.37631 -25.45199 -24.62213 -21.80646 -20.84531 -19.50826 -18.87822 -16.99193 -16.86709 -15.69655 -15.14806 -14.58202 -14.32920 -14.06518 -13.91471 -13.55530 -13.25641 -12.88829 -12.72294 -12.42882 -12.13551 -11.93636 -11.71151 -11.55130 -11.41173 -11.04187 -10.83782 -10.63354 -10.62350 -10.40181 -10.30526 -10.12728 -9.18579 -8.98141 -8.47335 -8.24512 -7.94101 -6.33718 -3.96002 2.16506 2.79041 2.98438 3.05298 3.16768 3.20733 3.81039 4.01776 4.59761 4.91254 4.98287 5.03815 5.22433 5.38449 5.42806 5.67535 5.71076 5.74538 5.88820 5.96192 5.99906 6.13365 6.15389 6.30448 6.41322 6.61531 6.83088 6.85235 6.94902 7.16795 7.30548 7.34932 7.46280 7.69525 8.01301 8.32629 8.99663 9.45127 9.84212 10.58351 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.023274 B = 0.006394 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.764349 B = 4378.043091 C = 5280.872112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.058 3.942 3 C -0.282 4.282 4 C 0.055 3.945 5 N -0.357 5.357 6 C 0.154 3.846 7 C -0.100 4.100 8 H 0.097 0.903 9 C -0.141 4.141 10 C 0.453 3.547 11 O -0.621 6.621 12 N -0.437 5.437 13 C 0.118 3.882 14 C -0.329 4.329 15 H 0.104 0.896 16 C 0.034 3.966 17 N -0.873 5.873 18 Si 0.924 3.076 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.280 1.280 22 N -0.289 5.289 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.141 0.859 27 H 0.169 0.831 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.036 0.964 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.764 10.544 -3.220 12.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.108 4.108 3 C -0.312 4.312 4 C -0.092 4.092 5 N -0.138 5.138 6 C 0.033 3.967 7 C -0.121 4.121 8 H 0.116 0.884 9 C -0.199 4.199 10 C 0.241 3.759 11 O -0.510 6.510 12 N -0.152 5.152 13 C -0.025 4.025 14 C -0.457 4.457 15 H 0.121 0.879 16 C -0.170 4.170 17 N -0.512 5.512 18 Si 0.751 3.249 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.206 1.206 22 N -0.112 5.112 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.159 0.841 27 H 0.187 0.813 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.062 9.037 -3.467 11.421 hybrid contribution -0.603 0.540 0.766 1.114 sum -6.665 9.577 -2.701 11.976 Atomic orbital electron populations 1.20106 0.87196 1.02790 1.02644 1.22303 0.96784 0.90985 1.00766 1.21273 0.91701 0.99422 1.18811 1.22537 0.99516 0.85290 1.01873 1.48830 1.05513 1.04636 1.54826 1.21639 0.82358 0.92366 1.00367 1.21150 1.00374 0.95703 0.94921 0.88444 1.21756 1.00344 1.00062 0.97697 1.19622 0.88096 0.83635 0.84532 1.90514 1.43067 1.76905 1.40478 1.43660 1.19036 1.22681 1.29870 1.21584 0.87823 0.92620 1.00467 1.19850 0.96236 1.21042 1.08596 0.87858 1.25324 0.97644 0.96368 0.97666 1.70178 1.22711 1.25720 1.32578 0.85890 0.80831 0.78705 0.79517 1.19117 1.20449 1.20555 1.77334 0.86740 1.22822 1.24340 0.90856 0.90902 0.91187 0.84114 0.81330 0.89368 0.88280 0.93389 0.93426 0.89514 0.94488 0.90400 0.92907 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.45 36.00 0.38 -0.36 16 2 C 0.06 0.85 7.22 -82.41 -0.59 0.25 16 3 C -0.28 -3.72 10.74 -40.01 -0.43 -4.15 16 4 C 0.06 0.75 11.45 -17.22 -0.20 0.55 16 5 N -0.36 -5.90 3.23 -61.36 -0.20 -6.10 16 6 C 0.15 2.69 5.20 -4.04 -0.02 2.67 16 7 C -0.10 -2.01 1.96 -91.78 -0.18 -2.19 16 8 H 0.10 2.09 7.20 -51.93 -0.37 1.72 16 9 C -0.14 -2.64 8.67 37.16 0.32 -2.32 16 10 C 0.45 10.92 6.96 -10.99 -0.08 10.84 16 11 O -0.62 -16.04 15.33 5.55 0.09 -15.95 16 12 N -0.44 -11.15 3.03 -122.19 -0.37 -11.52 16 13 C 0.12 2.96 8.88 59.85 0.53 3.50 16 14 C -0.33 -8.31 7.86 -14.93 -0.12 -8.43 16 15 H 0.10 2.51 5.48 -52.49 -0.29 2.22 16 16 C 0.03 0.85 5.40 -17.47 -0.09 0.76 16 17 N -0.87 -22.56 9.64 55.50 0.54 -22.03 16 18 Si 0.92 19.55 29.56 -169.99 -5.02 14.53 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 22 N -0.29 -5.10 12.34 33.67 0.42 -4.69 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 27 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.09 1.61 8.06 -51.93 -0.42 1.20 16 29 H 0.10 1.60 8.07 -51.93 -0.42 1.18 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.84 7.90 -51.93 -0.41 0.43 16 32 H 0.09 1.79 5.91 -51.93 -0.31 1.48 16 33 H 0.04 0.90 6.91 -51.93 -0.36 0.54 16 34 H 0.08 2.02 6.68 -51.93 -0.35 1.67 16 35 H 0.05 1.35 7.48 -51.93 -0.39 0.96 16 36 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 299.90 15.07 4.52 4.52 Total: -1.00 -29.61 299.90 -5.50 -35.11 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -4.98 Total: 5.01 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -0.48 Total: 1.12 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.38 Total: -44.33 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.09 Total: -15.95 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.61 -5.50 -35.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865067956.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.775 kcal (2) G-P(sol) polarization free energy of solvation -29.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds