Wall clock time and date at job start Sun Mar 29 2020 22:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39867 * 125.89909 * 2 1 4 4 C 1.35323 * 107.92177 * 179.86732 * 3 2 1 5 5 N 1.34952 * 107.74241 * 0.39465 * 4 3 2 6 6 C 1.46505 * 126.03405 * 179.75723 * 5 4 3 7 7 C 1.52996 * 109.47244 * 124.97321 * 6 5 4 8 8 H 1.09006 * 109.47277 * 54.99788 * 7 6 5 9 9 C 1.52998 * 109.47144 * 294.99882 * 7 6 5 10 10 C 1.50698 * 109.47080 * 174.99385 * 7 6 5 11 11 O 1.21293 * 119.99847 * 6.72486 * 10 7 6 12 12 N 1.34778 * 120.00019 * 186.71670 * 10 7 6 13 13 C 1.46500 * 120.00058 * 183.32589 * 12 10 7 14 14 C 1.37093 * 120.00034 * 3.32808 * 12 10 7 15 15 H 1.08001 * 120.00397 * 8.18629 * 14 12 10 16 16 C 1.38952 * 120.00401 * 188.19592 * 14 12 10 17 17 N 1.31411 * 119.99370 * 6.58480 * 16 14 12 18 18 Si 1.86795 * 120.00423 * 186.59305 * 16 14 12 19 19 H 1.48505 * 109.46871 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47268 * 119.99433 * 18 16 14 21 21 H 1.48504 * 109.46819 * 239.99540 * 18 16 14 22 22 N 1.30844 * 125.89895 * 180.31131 * 2 1 3 23 23 H 1.08990 * 109.47129 * 269.71066 * 1 2 3 24 24 H 1.09001 * 109.47171 * 29.71591 * 1 2 3 25 25 H 1.09003 * 109.46873 * 149.71063 * 1 2 3 26 26 H 1.07999 * 126.04268 * 359.97438 * 3 2 1 27 27 H 1.07997 * 126.12717 * 180.15401 * 4 3 2 28 28 H 1.09005 * 109.46687 * 244.97299 * 6 5 4 29 29 H 1.08993 * 109.47229 * 4.96929 * 6 5 4 30 30 H 1.09005 * 109.47142 * 305.21266 * 9 7 6 31 31 H 1.08997 * 109.47474 * 65.21775 * 9 7 6 32 32 H 1.08997 * 109.47182 * 185.21354 * 9 7 6 33 33 H 1.09000 * 109.46942 * 355.03454 * 13 12 10 34 34 H 1.09002 * 109.46861 * 115.03255 * 13 12 10 35 35 H 1.09000 * 109.47185 * 235.03317 * 13 12 10 36 36 H 0.97008 * 120.00001 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0030 5 7 3.6087 -0.6341 -0.0040 6 6 4.7900 -1.5008 -0.0088 7 6 4.7123 -2.4753 1.1681 8 1 3.7710 -3.0232 1.1247 9 6 4.7881 -1.6951 2.4820 10 6 5.8625 -3.4461 1.0931 11 8 6.7318 -3.2933 0.2611 12 7 5.9253 -4.4839 1.9507 13 6 7.0797 -5.3856 1.9261 14 6 4.9089 -4.6959 2.8459 15 1 4.0002 -4.1161 2.7786 16 6 5.0478 -5.6566 3.8402 17 7 6.1981 -6.2705 4.0044 18 14 3.5996 -6.0756 4.9431 19 1 2.4276 -5.2497 4.5562 20 1 3.2631 -7.5142 4.7931 21 1 3.9570 -5.7955 6.3570 22 7 2.2742 -1.0599 -0.0058 23 1 -0.3633 -0.0052 1.0276 24 1 -0.3633 0.8925 -0.5094 25 1 -0.3633 -0.8874 -0.5183 26 1 1.9923 2.1598 -0.0004 27 1 4.4891 1.3485 0.0061 28 1 4.8254 -2.0614 -0.9430 29 1 5.6885 -0.8908 0.0831 30 1 5.6849 -1.0754 2.4854 31 1 3.9074 -1.0603 2.5790 32 1 4.8261 -2.3938 3.3178 33 1 7.7352 -5.1142 1.0986 34 1 7.6265 -5.3014 2.8653 35 1 6.7365 -6.4119 1.7963 36 1 6.2950 -6.9415 4.6983 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865067956.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:44 Heat of formation + Delta-G solvation = 29.236273 kcal Electronic energy + Delta-G solvation = -18653.645762 eV Core-core repulsion = 15753.351711 eV Total energy + Delta-G solvation = -2900.294051 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.09956 -40.68079 -36.97336 -36.08664 -33.58442 -33.12547 -30.85008 -29.75194 -28.29990 -26.94789 -26.34988 -23.37355 -21.95901 -21.00994 -20.40398 -18.77900 -18.42376 -17.22268 -16.58277 -16.38198 -16.06473 -15.75329 -15.09112 -14.95258 -14.68662 -14.22384 -13.96026 -13.65301 -13.56163 -13.44739 -13.22299 -13.13846 -12.83482 -12.78326 -12.59878 -12.39002 -12.17939 -12.10672 -12.00678 -11.35103 -11.11145 -10.36616 -10.13412 -9.94166 -9.39323 -8.26107 -5.94851 1.06320 1.36037 1.43799 1.56134 1.60222 1.92439 1.96409 2.24427 2.93239 3.11104 3.58094 3.87819 3.99601 4.04307 4.13438 4.34274 4.42371 4.59106 4.64605 4.76100 4.85785 4.88595 4.92800 4.99138 5.02451 5.09143 5.13009 5.26708 5.33464 5.39126 5.43757 5.72827 5.88571 6.20172 6.36193 6.91133 7.04595 7.50439 7.89077 8.67517 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.023274 B = 0.006394 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.764349 B = 4378.043091 C = 5280.872112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.052 3.948 3 C -0.282 4.282 4 C 0.054 3.946 5 N -0.374 5.374 6 C 0.166 3.834 7 C -0.088 4.088 8 H 0.081 0.919 9 C -0.127 4.127 10 C 0.447 3.553 11 O -0.641 6.641 12 N -0.453 5.453 13 C 0.131 3.869 14 C -0.344 4.344 15 H 0.109 0.891 16 C -0.008 4.008 17 N -0.899 5.899 18 Si 0.991 3.009 19 H -0.261 1.261 20 H -0.278 1.278 21 H -0.275 1.275 22 N -0.342 5.342 23 H 0.083 0.917 24 H 0.100 0.900 25 H 0.064 0.936 26 H 0.172 0.828 27 H 0.203 0.797 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.067 0.933 35 H 0.041 0.959 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.217 12.465 -2.814 15.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.114 4.114 3 C -0.311 4.311 4 C -0.092 4.092 5 N -0.155 5.155 6 C 0.044 3.956 7 C -0.110 4.110 8 H 0.099 0.901 9 C -0.184 4.184 10 C 0.236 3.764 11 O -0.531 6.531 12 N -0.169 5.169 13 C -0.012 4.012 14 C -0.471 4.471 15 H 0.127 0.873 16 C -0.209 4.209 17 N -0.539 5.539 18 Si 0.814 3.186 19 H -0.184 1.184 20 H -0.204 1.204 21 H -0.200 1.200 22 N -0.166 5.166 23 H 0.101 0.899 24 H 0.119 0.881 25 H 0.083 0.917 26 H 0.190 0.810 27 H 0.220 0.780 28 H 0.090 0.910 29 H 0.133 0.867 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.525 10.978 -3.068 13.658 hybrid contribution -0.152 -0.002 0.588 0.608 sum -7.677 10.976 -2.479 13.622 Atomic orbital electron populations 1.20257 0.84865 1.03954 1.03591 1.23026 0.98408 0.90956 0.98977 1.21701 0.91229 1.00459 1.17744 1.23215 1.01209 0.84308 1.00440 1.48695 1.04812 1.05461 1.56551 1.21357 0.83763 0.92269 0.98203 1.21011 0.97493 0.95394 0.97056 0.90070 1.21609 1.01423 0.99527 0.95870 1.20324 0.88814 0.83679 0.83581 1.90485 1.44175 1.77385 1.41072 1.43908 1.19223 1.23228 1.30531 1.21359 0.87894 0.92168 0.99751 1.20096 0.96425 1.21697 1.08912 0.87324 1.26165 1.00059 0.95957 0.98732 1.70271 1.24281 1.26084 1.33214 0.84893 0.77825 0.78259 0.77622 1.18446 1.20351 1.20045 1.77303 0.87588 1.24855 1.26857 0.89878 0.88141 0.91663 0.81015 0.78002 0.90958 0.86725 0.92262 0.92189 0.91531 0.94514 0.91456 0.93991 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.45 71.23 0.74 -0.56 16 2 C 0.05 1.43 7.22 43.10 0.31 1.74 16 3 C -0.28 -6.53 10.74 21.99 0.24 -6.30 16 4 C 0.05 1.32 11.45 83.54 0.96 2.28 16 5 N -0.37 -11.85 3.23 -348.05 -1.12 -12.97 16 6 C 0.17 5.71 5.20 86.38 0.45 6.16 16 7 C -0.09 -3.52 1.96 -11.54 -0.02 -3.55 16 8 H 0.08 3.54 7.20 -2.38 -0.02 3.52 16 9 C -0.13 -4.63 8.67 71.98 0.62 -4.01 16 10 C 0.45 21.76 6.96 87.66 0.61 22.37 16 11 O -0.64 -33.42 15.33 -3.07 -0.05 -33.47 16 12 N -0.45 -23.50 3.03 -658.89 -1.99 -25.49 16 13 C 0.13 6.78 8.88 127.77 1.13 7.91 16 14 C -0.34 -17.49 7.86 84.04 0.66 -16.83 16 15 H 0.11 5.30 5.48 -2.91 -0.02 5.28 16 16 C -0.01 -0.38 5.40 84.93 0.46 0.07 16 17 N -0.90 -46.84 9.64 21.66 0.21 -46.63 16 18 Si 0.99 39.74 29.56 68.60 2.03 41.77 16 19 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 20 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 22 N -0.34 -11.82 12.34 -47.39 -0.58 -12.41 16 23 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 27 H 0.20 3.32 8.06 -2.91 -0.02 3.30 16 28 H 0.07 2.68 8.06 -2.38 -0.02 2.66 16 29 H 0.11 3.53 8.07 -2.39 -0.02 3.51 16 30 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.06 2.03 7.90 -2.39 -0.02 2.01 16 32 H 0.07 2.71 5.91 -2.39 -0.01 2.70 16 33 H 0.04 1.84 6.91 -2.39 -0.02 1.82 16 34 H 0.07 3.58 6.68 -2.39 -0.02 3.57 16 35 H 0.04 2.20 7.48 -2.39 -0.02 2.18 16 36 H 0.27 13.26 8.31 -92.70 -0.77 12.49 16 Total: -1.00 -63.61 299.90 5.72 -57.89 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 1.07 Total: 22.02 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 6.16 Total: 9.29 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -3.49 Total: -97.50 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -0.05 Total: -33.47 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Total: -63.61 5.72 -57.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865067956.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.127 kcal (2) G-P(sol) polarization free energy of solvation -63.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds