Wall clock time and date at job start Mon Mar 30 2020 00:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47223 * 2 1 4 4 C 1.53000 * 109.46746 * 120.00067 * 2 1 3 5 5 C 1.50706 * 109.47341 * 239.99447 * 2 1 3 6 6 N 1.35377 * 126.56488 * 1.75977 * 5 2 1 7 7 H 0.97004 * 126.13200 * 359.97438 * 6 5 2 8 8 C 1.35845 * 107.73042 * 179.97438 * 6 5 2 9 9 N 1.30167 * 109.00288 * 0.02562 * 8 6 5 10 10 C 1.35760 * 108.86580 * 359.72974 * 9 8 6 11 11 C 1.47328 * 126.23234 * 180.27421 * 10 9 8 12 12 O 1.21629 * 119.99773 * 174.62850 * 11 10 9 13 13 N 1.34774 * 120.00571 * 354.63447 * 11 10 9 14 14 C 1.46494 * 120.00266 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47154 * 179.97438 * 14 13 11 16 16 H 1.08005 * 120.00321 * 359.97438 * 15 14 13 17 17 C 1.37885 * 120.00330 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99970 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99661 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47005 * 89.99851 * 19 17 15 21 21 H 1.48491 * 109.47004 * 209.99951 * 19 17 15 22 22 H 1.48498 * 109.46869 * 330.00116 * 19 17 15 23 23 H 1.09005 * 109.47367 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46655 * 60.00145 * 1 2 3 25 25 H 1.08993 * 109.47421 * 300.00362 * 1 2 3 26 26 H 1.09000 * 109.47311 * 70.24934 * 3 2 1 27 27 H 1.09007 * 109.47158 * 190.24253 * 3 2 1 28 28 H 1.08997 * 109.47535 * 310.24473 * 3 2 1 29 29 H 1.09002 * 109.47467 * 65.24306 * 4 2 1 30 30 H 1.09010 * 109.47336 * 185.24142 * 4 2 1 31 31 H 1.09002 * 109.47150 * 305.24274 * 4 2 1 32 32 H 1.07998 * 125.49529 * 180.02562 * 8 6 5 33 33 H 0.96998 * 119.99584 * 359.97438 * 13 11 10 34 34 H 1.09002 * 109.47222 * 299.99906 * 14 13 11 35 35 H 1.09004 * 109.47356 * 60.00105 * 14 13 11 36 36 H 0.96998 * 119.99290 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 2.0324 -0.7105 -1.2304 6 7 1.2766 -1.2430 -2.2193 7 1 0.3077 -1.2370 -2.2651 8 6 2.1185 -1.7873 -3.1360 9 7 3.3464 -1.6070 -2.7435 10 6 3.3360 -0.9353 -1.5637 11 6 4.5172 -0.5264 -0.7840 12 8 4.3812 0.1580 0.2122 13 7 5.7486 -0.9107 -1.1745 14 6 6.9231 -0.5046 -0.3987 15 6 8.1670 -1.0611 -1.0421 16 1 8.0904 -1.6580 -1.9390 17 6 9.4031 -0.8083 -0.4859 18 7 10.4886 -1.2944 -1.0472 19 14 9.5357 0.2235 1.0657 20 1 9.4567 -0.6606 2.2563 21 1 10.8331 0.9457 1.0705 22 1 8.4224 1.2055 1.1037 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 0.5138 0.8899 26 1 1.8337 1.9008 0.9672 27 1 3.1146 1.4479 -0.1827 28 1 1.5352 2.0063 -0.7844 29 1 1.7552 -1.7725 1.2036 30 1 3.1259 -0.6407 1.2975 31 1 1.6019 -0.2645 2.1368 32 1 1.8176 -2.2887 -4.0440 33 1 5.8570 -1.4568 -1.9687 34 1 6.9828 0.5834 -0.3726 35 1 6.8375 -0.8884 0.6179 36 1 11.3581 -1.1162 -0.6560 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867873511.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:42 Heat of formation + Delta-G solvation = 11.547008 kcal Electronic energy + Delta-G solvation = -18732.268931 eV Core-core repulsion = 15831.207816 eV Total energy + Delta-G solvation = -2901.061115 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.25605 -38.58052 -36.67520 -34.13139 -32.64525 -32.12981 -29.28013 -27.85668 -27.14796 -27.02276 -23.59707 -21.99785 -21.44018 -20.34498 -19.15368 -17.79013 -16.77647 -15.60660 -15.35682 -15.23785 -14.59575 -14.58709 -14.30160 -14.11895 -13.59427 -13.36572 -12.81180 -12.43814 -12.39552 -12.23216 -12.02915 -11.37368 -11.18181 -11.01578 -10.92750 -10.71242 -10.65029 -10.03992 -10.00024 -9.88477 -9.40053 -9.09037 -8.68533 -8.39954 -7.91353 -6.12826 -4.14198 1.78547 2.63332 2.94924 3.32290 3.38774 3.46925 4.02063 4.16049 4.40420 4.44609 4.72921 4.77077 4.91525 5.17218 5.22207 5.35052 5.47750 5.60723 5.62302 5.76158 5.89787 5.94620 6.13579 6.17874 6.19331 6.55767 6.71737 6.74615 6.89227 7.15878 7.23103 7.40713 7.51062 7.87610 8.28463 8.67587 8.86544 9.07740 9.47400 10.99410 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.031341 B = 0.005774 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.191108 B = 4847.987711 C = 5541.281987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.015 3.985 3 C -0.152 4.152 4 C -0.157 4.157 5 C 0.070 3.930 6 N -0.567 5.567 7 H 0.419 0.581 8 C 0.176 3.824 9 N -0.457 5.457 10 C -0.050 4.050 11 C 0.583 3.417 12 O -0.548 6.548 13 N -0.686 5.686 14 C 0.220 3.780 15 C -0.541 4.541 16 H 0.080 0.920 17 C 0.077 3.923 18 N -0.894 5.894 19 Si 0.877 3.123 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.260 1.260 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.212 0.788 33 H 0.405 0.595 34 H 0.027 0.973 35 H 0.022 0.978 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.150 1.098 -0.681 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.013 3.987 3 C -0.209 4.209 4 C -0.214 4.214 5 C -0.051 4.051 6 N -0.170 5.170 7 H 0.257 0.743 8 C -0.109 4.109 9 N -0.177 5.177 10 C -0.179 4.179 11 C 0.369 3.631 12 O -0.430 6.430 13 N -0.333 5.333 14 C 0.098 3.902 15 C -0.579 4.579 16 H 0.098 0.902 17 C -0.127 4.127 18 N -0.531 5.531 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.184 1.184 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.120 0.880 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.123 0.877 31 H 0.074 0.926 32 H 0.228 0.772 33 H 0.239 0.761 34 H 0.045 0.955 35 H 0.040 0.960 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.164 1.292 -0.396 21.207 hybrid contribution -1.079 0.278 0.487 1.216 sum -22.243 1.570 0.091 22.298 Atomic orbital electron populations 1.22035 0.95023 1.01461 1.02433 1.19034 0.93903 0.95827 0.89927 1.22169 1.05647 0.92203 1.00854 1.22209 1.06388 0.98233 0.94536 1.21172 0.90908 1.00366 0.92609 1.43136 1.10408 1.44894 1.18583 0.74275 1.25095 0.84956 1.03473 0.97355 1.70647 1.20821 1.15311 1.10886 1.20622 0.92810 1.08181 0.96318 1.16940 0.82218 0.80248 0.83738 1.90522 1.85506 1.40099 1.26833 1.46039 1.05624 1.51660 1.29931 1.19528 0.82954 0.95911 0.91822 1.21130 0.89178 1.34312 1.13244 0.90159 1.24797 0.95371 0.95250 0.97236 1.69891 0.98175 1.44792 1.40276 0.86821 0.78023 0.81274 0.83584 1.19906 1.21012 1.18422 0.92860 0.92911 0.91314 0.92381 0.87990 0.94139 0.93883 0.87672 0.92585 0.77177 0.76054 0.95532 0.96006 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 7.54 37.16 0.28 -1.05 16 2 C 0.01 0.18 0.75 -155.66 -0.12 0.07 16 3 C -0.15 -2.08 8.18 37.15 0.30 -1.77 16 4 C -0.16 -2.16 8.18 37.16 0.30 -1.85 16 5 C 0.07 0.98 5.59 -81.68 -0.46 0.52 16 6 N -0.57 -5.70 5.83 -10.11 -0.06 -5.76 16 7 H 0.42 2.58 8.11 -40.82 -0.33 2.25 16 8 C 0.18 1.97 13.04 -89.91 -1.17 0.80 16 9 N -0.46 -7.40 11.02 -11.03 -0.12 -7.52 16 10 C -0.05 -0.88 6.78 -83.09 -0.56 -1.44 16 11 C 0.58 12.06 7.36 -12.56 -0.09 11.97 16 12 O -0.55 -11.74 10.04 5.25 0.05 -11.69 16 13 N -0.69 -15.42 5.54 -62.60 -0.35 -15.76 16 14 C 0.22 5.60 4.50 -5.20 -0.02 5.57 16 15 C -0.54 -15.40 9.83 -34.44 -0.34 -15.74 16 16 H 0.08 2.42 7.84 -52.48 -0.41 2.00 16 17 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 18 N -0.89 -27.16 13.96 55.43 0.77 -26.38 16 19 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 23 H 0.05 0.41 8.13 -51.93 -0.42 -0.01 16 24 H 0.05 0.40 8.05 -51.93 -0.42 -0.02 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 27 H 0.10 1.77 4.67 -51.93 -0.24 1.52 16 28 H 0.04 0.49 8.11 -51.93 -0.42 0.07 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.11 1.83 4.63 -51.92 -0.24 1.59 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.21 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.40 8.83 8.04 -40.82 -0.33 8.50 16 34 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 35 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 36 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 293.08 15.07 4.42 4.42 Total: -1.00 -33.03 293.08 -6.79 -39.82 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -4.86 Total: 6.62 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -1.97 Total: -0.81 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.25 Total: -55.43 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.05 Total: -11.69 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.03 -6.79 -39.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867873511.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.367 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds