Wall clock time and date at job start Mon Mar 30 2020 00:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47223 * 2 1 4 4 C 1.53000 * 109.46746 * 120.00067 * 2 1 3 5 5 C 1.50706 * 109.47341 * 239.99447 * 2 1 3 6 6 N 1.35377 * 126.56488 * 1.75977 * 5 2 1 7 7 H 0.97004 * 126.13200 * 359.97438 * 6 5 2 8 8 C 1.35845 * 107.73042 * 179.97438 * 6 5 2 9 9 N 1.30167 * 109.00288 * 0.02562 * 8 6 5 10 10 C 1.35760 * 108.86580 * 359.72974 * 9 8 6 11 11 C 1.47328 * 126.23234 * 180.27421 * 10 9 8 12 12 O 1.21629 * 119.99773 * 174.62850 * 11 10 9 13 13 N 1.34774 * 120.00571 * 354.63447 * 11 10 9 14 14 C 1.46494 * 120.00266 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47154 * 179.97438 * 14 13 11 16 16 H 1.08005 * 120.00321 * 359.97438 * 15 14 13 17 17 C 1.37885 * 120.00330 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99970 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99661 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47005 * 89.99851 * 19 17 15 21 21 H 1.48491 * 109.47004 * 209.99951 * 19 17 15 22 22 H 1.48498 * 109.46869 * 330.00116 * 19 17 15 23 23 H 1.09005 * 109.47367 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46655 * 60.00145 * 1 2 3 25 25 H 1.08993 * 109.47421 * 300.00362 * 1 2 3 26 26 H 1.09000 * 109.47311 * 70.24934 * 3 2 1 27 27 H 1.09007 * 109.47158 * 190.24253 * 3 2 1 28 28 H 1.08997 * 109.47535 * 310.24473 * 3 2 1 29 29 H 1.09002 * 109.47467 * 65.24306 * 4 2 1 30 30 H 1.09010 * 109.47336 * 185.24142 * 4 2 1 31 31 H 1.09002 * 109.47150 * 305.24274 * 4 2 1 32 32 H 1.07998 * 125.49529 * 180.02562 * 8 6 5 33 33 H 0.96998 * 119.99584 * 359.97438 * 13 11 10 34 34 H 1.09002 * 109.47222 * 299.99906 * 14 13 11 35 35 H 1.09004 * 109.47356 * 60.00105 * 14 13 11 36 36 H 0.96998 * 119.99290 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 2.0324 -0.7105 -1.2304 6 7 1.2766 -1.2430 -2.2193 7 1 0.3077 -1.2370 -2.2651 8 6 2.1185 -1.7873 -3.1360 9 7 3.3464 -1.6070 -2.7435 10 6 3.3360 -0.9353 -1.5637 11 6 4.5172 -0.5264 -0.7840 12 8 4.3812 0.1580 0.2122 13 7 5.7486 -0.9107 -1.1745 14 6 6.9231 -0.5046 -0.3987 15 6 8.1670 -1.0611 -1.0421 16 1 8.0904 -1.6580 -1.9390 17 6 9.4031 -0.8083 -0.4859 18 7 10.4886 -1.2944 -1.0472 19 14 9.5357 0.2235 1.0657 20 1 9.4567 -0.6606 2.2563 21 1 10.8331 0.9457 1.0705 22 1 8.4224 1.2055 1.1037 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 0.5138 0.8899 26 1 1.8337 1.9008 0.9672 27 1 3.1146 1.4479 -0.1827 28 1 1.5352 2.0063 -0.7844 29 1 1.7552 -1.7725 1.2036 30 1 3.1259 -0.6407 1.2975 31 1 1.6019 -0.2645 2.1368 32 1 1.8176 -2.2887 -4.0440 33 1 5.8570 -1.4568 -1.9687 34 1 6.9828 0.5834 -0.3726 35 1 6.8375 -0.8884 0.6179 36 1 11.3581 -1.1162 -0.6560 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867873511.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:42 Heat of formation + Delta-G solvation = -12.430879 kcal Electronic energy + Delta-G solvation = -18733.308690 eV Core-core repulsion = 15831.207816 eV Total energy + Delta-G solvation = -2902.100874 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.30005 -40.15914 -37.71949 -36.00124 -34.37447 -33.56819 -30.61326 -29.56401 -28.10515 -28.04646 -25.21625 -23.23423 -22.93371 -21.56550 -20.61714 -19.00737 -18.55552 -17.23615 -16.86153 -16.58754 -16.01444 -15.89330 -15.51747 -15.37247 -14.89076 -14.76132 -14.43073 -14.10203 -13.99745 -13.15337 -13.05678 -12.99980 -12.72419 -12.37035 -12.25463 -11.90285 -11.89996 -11.83183 -11.65945 -11.07471 -11.05631 -10.89285 -10.63488 -9.83559 -9.39952 -8.38226 -6.45807 0.60828 1.35041 1.35808 1.49909 1.54683 2.03308 2.30256 2.60089 2.64809 2.96898 3.49760 3.69620 3.86439 4.06153 4.29798 4.36728 4.39904 4.68286 4.78018 4.79318 4.90630 4.91848 5.02328 5.05067 5.08968 5.12181 5.24793 5.27581 5.45436 5.48951 5.58950 5.80167 6.11632 6.43749 6.54798 6.79726 7.01573 7.17638 7.46264 8.77220 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.031341 B = 0.005774 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.191108 B = 4847.987711 C = 5541.281987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.012 3.988 3 C -0.149 4.149 4 C -0.154 4.154 5 C 0.086 3.914 6 N -0.545 5.545 7 H 0.442 0.558 8 C 0.203 3.797 9 N -0.507 5.507 10 C -0.094 4.094 11 C 0.578 3.422 12 O -0.559 6.559 13 N -0.699 5.699 14 C 0.236 3.764 15 C -0.550 4.550 16 H 0.050 0.950 17 C 0.025 3.975 18 N -0.934 5.934 19 Si 0.944 3.056 20 H -0.263 1.263 21 H -0.272 1.272 22 H -0.257 1.257 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.262 0.738 33 H 0.404 0.596 34 H 0.017 0.983 35 H 0.016 0.984 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.486 1.426 -0.463 25.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.011 3.989 3 C -0.206 4.206 4 C -0.212 4.212 5 C -0.037 4.037 6 N -0.150 5.150 7 H 0.285 0.715 8 C -0.083 4.083 9 N -0.227 5.227 10 C -0.221 4.221 11 C 0.366 3.634 12 O -0.442 6.442 13 N -0.347 5.347 14 C 0.112 3.888 15 C -0.588 4.588 16 H 0.068 0.932 17 C -0.175 4.175 18 N -0.572 5.572 19 Si 0.766 3.234 20 H -0.188 1.188 21 H -0.197 1.197 22 H -0.181 1.181 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.277 0.723 33 H 0.239 0.761 34 H 0.035 0.965 35 H 0.034 0.966 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.555 1.618 -0.183 24.609 hybrid contribution -0.138 0.125 0.325 0.374 sum -24.693 1.743 0.142 24.755 Atomic orbital electron populations 1.21989 0.91282 1.03028 1.03924 1.19113 0.96774 0.94454 0.88605 1.22075 1.03116 0.93599 1.01856 1.22121 1.03810 0.99041 0.96200 1.21243 0.90095 0.99114 0.93272 1.43054 1.11487 1.43419 1.17047 0.71460 1.26034 0.83576 1.00915 0.97788 1.70569 1.23885 1.17088 1.11160 1.20220 0.92694 1.11489 0.97739 1.17453 0.82515 0.79550 0.83862 1.90535 1.85866 1.40321 1.27446 1.45929 1.05732 1.52900 1.30108 1.19117 0.83147 0.94893 0.91601 1.21302 0.90856 1.34092 1.12535 0.93204 1.25669 0.94846 0.96382 1.00615 1.70003 0.98928 1.46204 1.42106 0.85768 0.78448 0.79711 0.79434 1.18756 1.19677 1.18069 0.91237 0.91084 0.90319 0.91509 0.92023 0.92654 0.93386 0.91668 0.90903 0.72282 0.76096 0.96531 0.96582 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 7.54 71.98 0.54 -1.37 16 2 C 0.01 0.28 0.75 -52.93 -0.04 0.24 16 3 C -0.15 -3.91 8.18 71.98 0.59 -3.32 16 4 C -0.15 -4.09 8.18 71.98 0.59 -3.50 16 5 C 0.09 2.23 5.59 41.59 0.23 2.46 16 6 N -0.55 -8.85 5.83 -185.91 -1.08 -9.94 16 7 H 0.44 3.12 8.11 -92.71 -0.75 2.37 16 8 C 0.20 3.85 13.04 180.10 2.35 6.20 16 9 N -0.51 -15.99 11.02 -188.82 -2.08 -18.07 16 10 C -0.09 -3.29 6.78 40.50 0.27 -3.01 16 11 C 0.58 24.85 7.36 86.64 0.64 25.49 16 12 O -0.56 -24.96 10.04 -4.12 -0.04 -25.00 16 13 N -0.70 -33.04 5.54 -470.20 -2.61 -35.64 16 14 C 0.24 12.47 4.50 85.63 0.38 12.85 16 15 C -0.55 -32.66 9.83 25.60 0.25 -32.41 16 16 H 0.05 3.18 7.84 -2.91 -0.02 3.16 16 17 C 0.02 1.47 5.47 84.66 0.46 1.93 16 18 N -0.93 -58.07 13.96 21.45 0.30 -57.77 16 19 Si 0.94 45.47 27.47 68.60 1.88 47.36 16 20 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.26 -12.15 6.54 99.48 0.65 -11.50 16 23 H 0.07 0.72 8.13 -2.38 -0.02 0.70 16 24 H 0.07 0.70 8.05 -2.38 -0.02 0.69 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 1.58 8.11 -2.39 -0.02 1.56 16 27 H 0.06 2.17 4.67 -2.38 -0.01 2.16 16 28 H 0.05 1.24 8.11 -2.39 -0.02 1.22 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 2.31 4.63 -2.38 -0.01 2.30 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.26 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.40 18.78 8.04 -92.71 -0.75 18.03 16 34 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 35 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 36 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -75.95 293.08 2.20 -73.75 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -0.44 Total: 19.77 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 6.27 Total: 5.56 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -5.47 Total: -121.43 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.04 Total: -25.00 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.88 Total: 47.36 kcal Total: -75.95 2.20 -73.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867873511.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.318 kcal (2) G-P(sol) polarization free energy of solvation -75.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds