Wall clock time and date at job start Sun Mar 29 2020 22:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39878 * 125.89456 * 2 1 4 4 C 1.35316 * 107.91913 * 179.97438 * 3 2 1 5 5 N 1.34957 * 107.74619 * 0.02562 * 4 3 2 6 6 C 1.46499 * 126.03564 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46840 * 125.00168 * 6 5 4 8 8 H 1.09002 * 109.47069 * 304.99442 * 7 6 5 9 9 C 1.52993 * 109.47345 * 65.00000 * 7 6 5 10 10 C 1.50703 * 109.46801 * 184.99719 * 7 6 5 11 11 O 1.21280 * 120.00262 * 0.02562 * 10 7 6 12 12 N 1.34776 * 119.99815 * 179.97438 * 10 7 6 13 13 C 1.46497 * 119.99939 * 180.02562 * 12 10 7 14 14 C 1.50697 * 109.47338 * 180.02562 * 13 12 10 15 15 H 1.08005 * 120.00117 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00475 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00099 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00478 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47141 * 59.99548 * 18 16 14 20 20 H 1.48494 * 109.47407 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46831 * 299.99844 * 18 16 14 22 22 N 1.30838 * 125.90463 * 180.30588 * 2 1 3 23 23 H 1.08996 * 109.46654 * 90.00014 * 1 2 3 24 24 H 1.09002 * 109.46467 * 209.99500 * 1 2 3 25 25 H 1.08995 * 109.46919 * 329.99860 * 1 2 3 26 26 H 1.07996 * 126.03942 * 0.02562 * 3 2 1 27 27 H 1.08002 * 126.12972 * 179.97438 * 4 3 2 28 28 H 1.09002 * 109.47391 * 4.99837 * 6 5 4 29 29 H 1.09001 * 109.46813 * 244.99894 * 6 5 4 30 30 H 1.09004 * 109.47135 * 179.97438 * 9 7 6 31 31 H 1.09002 * 109.47179 * 299.99584 * 9 7 6 32 32 H 1.08993 * 109.47639 * 59.99724 * 9 7 6 33 33 H 0.96998 * 120.00301 * 0.02562 * 12 10 7 34 34 H 1.09003 * 109.47209 * 299.99513 * 13 12 10 35 35 H 1.09000 * 109.47689 * 59.99911 * 13 12 10 36 36 H 0.96998 * 120.00474 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 0.0006 5 7 3.6088 -0.6340 0.0004 6 6 4.7900 -1.5006 0.0003 7 6 4.7117 -2.4696 1.1817 8 1 4.5863 -1.9059 2.1062 9 6 3.5199 -3.4099 0.9920 10 6 5.9821 -3.2771 1.2541 11 8 6.8635 -3.0951 0.4412 12 7 6.1391 -4.2008 2.2230 13 6 7.3742 -4.9854 2.2937 14 6 7.2971 -5.9399 3.4573 15 1 6.4163 -5.9598 4.0820 16 6 8.3513 -6.7871 3.7251 17 7 9.4242 -6.7626 2.9648 18 14 8.2554 -7.9707 5.1670 19 1 7.0993 -8.8842 4.9816 20 1 9.5074 -8.7660 5.2388 21 1 8.0829 -7.2034 6.4267 22 7 2.2743 -1.0598 -0.0057 23 1 -0.3632 0.0000 -1.0277 24 1 -0.3632 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 1.9922 2.1599 0.0004 27 1 4.4892 1.3488 0.0003 28 1 5.6886 -0.8901 0.0900 29 1 4.8261 -2.0655 -0.9312 30 1 3.4643 -4.1005 1.8335 31 1 2.6010 -2.8258 0.9396 32 1 3.6452 -3.9735 0.0676 33 1 5.4343 -4.3460 2.8734 34 1 7.4999 -5.5493 1.3694 35 1 8.2232 -4.3152 2.4287 36 1 10.1661 -7.3583 3.1534 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867874018.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:48 Heat of formation + Delta-G solvation = 26.015538 kcal Electronic energy + Delta-G solvation = -17822.174117 eV Core-core repulsion = 14921.740405 eV Total energy + Delta-G solvation = -2900.433713 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.26648 -39.16521 -35.14655 -34.25233 -32.69451 -32.11285 -29.90937 -28.96937 -27.21205 -25.67006 -23.60366 -21.92472 -21.00638 -19.82731 -19.41183 -17.50999 -16.68494 -15.67991 -15.35890 -15.20110 -14.86897 -14.37201 -14.17946 -13.72229 -13.43600 -13.31532 -12.94685 -12.81488 -12.35107 -12.21851 -12.02548 -11.92680 -11.78451 -11.22851 -11.09121 -10.99212 -10.88092 -10.39646 -10.30438 -9.44991 -9.31468 -9.03112 -8.76929 -8.57607 -7.95103 -6.19548 -4.26857 1.86387 2.44749 2.72760 3.23627 3.25625 3.28578 3.30065 3.99954 4.32549 4.50844 4.72936 4.75193 4.91133 5.13858 5.16593 5.21107 5.44760 5.46552 5.50693 5.60558 5.68196 5.73961 5.78607 5.98934 6.02886 6.10506 6.39313 6.74302 7.00117 7.24578 7.35564 7.46687 7.61529 7.72050 7.93162 8.54913 8.71876 9.00311 9.39726 10.90600 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.046666 B = 0.003746 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.861780 B = 7472.780802 C = 7860.838330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.061 3.939 3 C -0.278 4.278 4 C 0.057 3.943 5 N -0.365 5.365 6 C 0.153 3.847 7 C -0.122 4.122 8 H 0.095 0.905 9 C -0.151 4.151 10 C 0.507 3.493 11 O -0.560 6.560 12 N -0.706 5.706 13 C 0.249 3.751 14 C -0.545 4.545 15 H 0.063 0.937 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 N -0.289 5.289 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.144 0.856 27 H 0.172 0.828 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.392 0.608 34 H 0.028 0.972 35 H 0.027 0.973 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.040 13.799 -4.002 20.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.105 4.105 3 C -0.308 4.308 4 C -0.089 4.089 5 N -0.146 5.146 6 C 0.031 3.969 7 C -0.144 4.144 8 H 0.113 0.887 9 C -0.209 4.209 10 C 0.291 3.709 11 O -0.440 6.440 12 N -0.353 5.353 13 C 0.129 3.871 14 C -0.584 4.584 15 H 0.081 0.919 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.200 1.200 22 N -0.113 5.113 23 H 0.092 0.908 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.161 0.839 27 H 0.190 0.810 28 H 0.124 0.876 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.225 0.775 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.003 12.442 -4.603 19.289 hybrid contribution -0.057 0.177 1.130 1.145 sum -14.060 12.619 -3.474 19.209 Atomic orbital electron populations 1.20139 0.86978 1.03082 1.02707 1.22396 0.96895 0.91022 1.00143 1.21333 0.91663 0.99627 1.18148 1.22601 0.99727 0.85087 1.01518 1.48750 1.05387 1.04656 1.55799 1.21592 0.82994 0.92414 0.99861 1.21518 0.95957 0.97421 0.99513 0.88714 1.22001 0.97815 0.98935 1.02129 1.20157 0.87547 0.81155 0.82048 1.90665 1.43735 1.68599 1.41045 1.46443 1.21800 1.37515 1.29574 1.19131 0.80659 0.89870 0.97462 1.21185 1.03104 1.20730 1.13337 0.91930 1.24949 0.94967 0.97158 0.96886 1.69960 1.05957 1.38148 1.38237 0.86461 0.77548 0.80652 0.82184 1.20020 1.21036 1.20040 1.77187 0.86670 1.22474 1.24957 0.90795 0.91036 0.90700 0.83862 0.81043 0.87630 0.88897 0.92277 0.88894 0.92388 0.77535 0.95430 0.95458 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.45 36.01 0.38 -0.19 16 2 C 0.06 0.71 7.22 -82.40 -0.59 0.11 16 3 C -0.28 -2.93 10.74 -40.01 -0.43 -3.36 16 4 C 0.06 0.62 11.45 -17.22 -0.20 0.42 16 5 N -0.36 -4.72 3.68 -61.36 -0.23 -4.95 16 6 C 0.15 2.06 5.31 -4.04 -0.02 2.04 16 7 C -0.12 -1.79 2.93 -91.77 -0.27 -2.06 16 8 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 9 C -0.15 -2.12 8.81 37.15 0.33 -1.79 16 10 C 0.51 9.89 7.15 -10.98 -0.08 9.81 16 11 O -0.56 -12.90 15.92 5.56 0.09 -12.81 16 12 N -0.71 -14.80 5.44 -61.47 -0.33 -15.14 16 13 C 0.25 6.58 5.43 -5.20 -0.03 6.55 16 14 C -0.55 -14.78 9.28 -34.44 -0.32 -15.10 16 15 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 18 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 N -0.29 -3.96 9.64 33.67 0.32 -3.63 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 27 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.11 1.33 7.88 -51.93 -0.41 0.92 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.06 0.79 7.56 -51.93 -0.39 0.40 16 31 H 0.09 1.29 5.37 -51.93 -0.28 1.01 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.39 7.18 7.74 -40.82 -0.32 6.87 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 308.75 15.07 4.65 4.65 Total: -1.00 -32.43 308.75 -6.27 -38.70 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.16 Total: 4.54 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -1.33 Total: -1.88 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.50 Total: -49.01 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.09 Total: -12.81 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.43 -6.27 -38.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867874018.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.713 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds