Wall clock time and date at job start Sun Mar 29 2020 22:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39864 * 125.89999 * 2 1 4 4 C 1.35316 * 107.91828 * 179.86198 * 3 2 1 5 5 N 1.34952 * 107.74600 * 0.40147 * 4 3 2 6 6 C 1.46497 * 126.03662 * 179.75302 * 5 4 3 7 7 C 1.52995 * 109.47654 * 124.96854 * 6 5 4 8 8 H 1.08998 * 109.46851 * 54.99450 * 7 6 5 9 9 C 1.52999 * 109.47067 * 295.00149 * 7 6 5 10 10 C 1.50702 * 109.47539 * 174.99644 * 7 6 5 11 11 O 1.21276 * 119.99538 * 0.02562 * 10 7 6 12 12 N 1.34775 * 119.99970 * 180.02562 * 10 7 6 13 13 C 1.46498 * 119.99703 * 180.02562 * 12 10 7 14 14 C 1.50700 * 109.47103 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99915 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00322 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00241 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99865 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47061 * 89.99615 * 18 16 14 20 20 H 1.48500 * 109.46987 * 210.00195 * 18 16 14 21 21 H 1.48505 * 109.46831 * 329.99875 * 18 16 14 22 22 N 1.30836 * 125.89591 * 180.31016 * 2 1 3 23 23 H 1.08999 * 109.46995 * 269.71428 * 1 2 3 24 24 H 1.08994 * 109.46790 * 29.71114 * 1 2 3 25 25 H 1.08997 * 109.47305 * 149.71555 * 1 2 3 26 26 H 1.07995 * 126.04278 * 359.97438 * 3 2 1 27 27 H 1.08002 * 126.12602 * 180.14496 * 4 3 2 28 28 H 1.09002 * 109.46907 * 244.96896 * 6 5 4 29 29 H 1.09007 * 109.47224 * 4.96492 * 6 5 4 30 30 H 1.09003 * 109.46901 * 299.99820 * 9 7 6 31 31 H 1.09002 * 109.47635 * 59.99545 * 9 7 6 32 32 H 1.09004 * 109.47294 * 179.97438 * 9 7 6 33 33 H 0.97003 * 119.99933 * 359.97438 * 12 10 7 34 34 H 1.08998 * 109.46882 * 299.99739 * 13 12 10 35 35 H 1.08998 * 109.47553 * 59.99780 * 13 12 10 36 36 H 0.97001 * 120.00218 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7152 0.0031 5 7 3.6087 -0.6343 -0.0040 6 6 4.7898 -1.5009 -0.0088 7 6 4.7122 -2.4754 1.1681 8 1 3.7709 -3.0233 1.1247 9 6 4.7880 -1.6953 2.4820 10 6 5.8624 -3.4463 1.0932 11 8 6.6654 -3.3663 0.1878 12 7 5.9987 -4.4034 2.0322 13 6 7.1171 -5.3468 1.9597 14 6 7.0406 -6.3067 3.1189 15 1 6.2387 -6.2227 3.8375 16 6 7.9936 -7.2928 3.2615 17 7 7.9271 -8.1302 4.2733 18 14 9.3793 -7.4395 2.0173 19 1 10.5296 -6.6100 2.4576 20 1 9.8032 -8.8589 1.9136 21 1 8.9063 -6.9660 0.6916 22 7 2.2742 -1.0599 -0.0057 23 1 -0.3633 -0.0051 1.0276 24 1 -0.3633 0.8925 -0.5093 25 1 -0.3634 -0.8874 -0.5182 26 1 1.9924 2.1597 -0.0004 27 1 4.4892 1.3484 0.0061 28 1 4.8253 -2.0615 -0.9430 29 1 5.6885 -0.8909 0.0832 30 1 5.7294 -1.1473 2.5254 31 1 3.9561 -0.9931 2.5363 32 1 4.7323 -2.3895 3.3206 33 1 5.3566 -4.4671 2.7566 34 1 7.0637 -5.9022 1.0234 35 1 8.0582 -4.7987 2.0038 36 1 8.5973 -8.8242 4.3735 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867874019.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:51 Heat of formation + Delta-G solvation = 2.982484 kcal Electronic energy + Delta-G solvation = -17846.411971 eV Core-core repulsion = 14944.979470 eV Total energy + Delta-G solvation = -2901.432501 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.14910 -40.83458 -36.50632 -36.09516 -34.48657 -33.33231 -30.92884 -30.15400 -29.38450 -26.85435 -25.01628 -23.26308 -21.99801 -21.32909 -20.41723 -19.12265 -18.20777 -17.53510 -16.93335 -16.74389 -16.35420 -15.77591 -15.21215 -15.01813 -14.85836 -14.44067 -14.24799 -14.18650 -13.82592 -13.55919 -13.42871 -13.19542 -13.08221 -12.85015 -12.71631 -12.38371 -12.27504 -11.94582 -11.68519 -11.40896 -10.93925 -10.86057 -10.15904 -10.00101 -9.43368 -8.41742 -6.49482 1.01055 1.31918 1.34235 1.46415 1.51116 1.59281 1.93094 2.26503 2.42166 2.93586 3.40616 3.61202 3.79820 3.97446 4.03385 4.16568 4.33655 4.52789 4.54800 4.68528 4.76017 4.82532 4.87304 4.89189 4.98138 5.00028 5.09724 5.11454 5.22858 5.30361 5.44126 5.84231 6.04300 6.15504 6.51005 6.73720 6.85979 7.11161 7.28814 8.73101 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.047798 B = 0.003896 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.660453 B = 7185.805378 C = 7442.081480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.055 3.945 3 C -0.283 4.283 4 C 0.057 3.943 5 N -0.376 5.376 6 C 0.159 3.841 7 C -0.108 4.108 8 H 0.106 0.894 9 C -0.133 4.133 10 C 0.513 3.487 11 O -0.590 6.590 12 N -0.701 5.701 13 C 0.231 3.769 14 C -0.549 4.549 15 H 0.057 0.943 16 C 0.026 3.974 17 N -0.932 5.932 18 Si 0.939 3.061 19 H -0.263 1.263 20 H -0.274 1.274 21 H -0.259 1.259 22 N -0.339 5.339 23 H 0.084 0.916 24 H 0.097 0.903 25 H 0.065 0.935 26 H 0.169 0.831 27 H 0.204 0.796 28 H 0.078 0.922 29 H 0.120 0.880 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.408 0.592 34 H 0.014 0.986 35 H 0.017 0.983 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.014 20.029 -7.197 23.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.111 4.111 3 C -0.312 4.312 4 C -0.089 4.089 5 N -0.157 5.157 6 C 0.038 3.962 7 C -0.130 4.130 8 H 0.124 0.876 9 C -0.190 4.190 10 C 0.299 3.701 11 O -0.472 6.472 12 N -0.350 5.350 13 C 0.108 3.892 14 C -0.587 4.587 15 H 0.075 0.925 16 C -0.175 4.175 17 N -0.570 5.570 18 Si 0.763 3.237 19 H -0.188 1.188 20 H -0.199 1.199 21 H -0.184 1.184 22 N -0.163 5.163 23 H 0.103 0.897 24 H 0.115 0.885 25 H 0.084 0.916 26 H 0.187 0.813 27 H 0.221 0.779 28 H 0.097 0.903 29 H 0.138 0.862 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.243 0.757 34 H 0.032 0.968 35 H 0.035 0.965 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.178 18.544 -7.737 22.523 hybrid contribution 0.522 0.081 0.115 0.541 sum -9.655 18.625 -7.621 22.320 Atomic orbital electron populations 1.20265 0.85021 1.03913 1.03665 1.22980 0.98325 0.90979 0.98795 1.21718 0.91462 1.00484 1.17569 1.23197 1.01092 0.84355 1.00224 1.48647 1.04790 1.05368 1.56938 1.21408 0.84171 0.92406 0.98244 1.21401 0.97387 0.95840 0.98342 0.87572 1.21694 1.03013 1.00241 0.94078 1.20856 0.86488 0.81542 0.81187 1.90640 1.46325 1.74296 1.35943 1.46033 1.29632 1.31100 1.28238 1.19138 0.86154 0.87863 0.96075 1.21292 1.12865 1.14404 1.10161 0.92458 1.25626 1.00141 0.94557 0.97132 1.69984 1.36902 1.18760 1.31374 0.85830 0.79654 0.78183 0.80069 1.18758 1.19911 1.18359 1.77272 0.87468 1.24545 1.26982 0.89726 0.88461 0.91584 0.81336 0.77925 0.90349 0.86231 0.91314 0.91180 0.91264 0.75683 0.96832 0.96526 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.45 71.24 0.74 -0.27 16 2 C 0.06 1.19 7.22 43.10 0.31 1.50 16 3 C -0.28 -5.05 10.74 21.99 0.24 -4.82 16 4 C 0.06 1.02 11.45 83.54 0.96 1.98 16 5 N -0.38 -8.86 3.13 -348.06 -1.09 -9.95 16 6 C 0.16 3.90 5.25 86.38 0.45 4.36 16 7 C -0.11 -2.90 2.81 -11.54 -0.03 -2.93 16 8 H 0.11 2.96 8.05 -2.39 -0.02 2.94 16 9 C -0.13 -3.00 8.98 71.98 0.65 -2.35 16 10 C 0.51 18.53 7.15 87.66 0.63 19.15 16 11 O -0.59 -25.10 15.92 -3.02 -0.05 -25.15 16 12 N -0.70 -27.83 5.44 -466.80 -2.54 -30.38 16 13 C 0.23 11.23 4.50 85.63 0.38 11.61 16 14 C -0.55 -30.30 9.83 25.60 0.25 -30.05 16 15 H 0.06 3.34 7.84 -2.91 -0.02 3.31 16 16 C 0.03 1.46 5.47 84.65 0.46 1.92 16 17 N -0.93 -55.67 13.96 21.45 0.30 -55.37 16 18 Si 0.94 43.72 27.47 68.60 1.88 45.61 16 19 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.26 -11.93 6.54 99.48 0.65 -11.28 16 22 N -0.34 -9.15 12.34 -47.38 -0.58 -9.73 16 23 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 27 H 0.20 2.10 8.06 -2.91 -0.02 2.07 16 28 H 0.08 2.16 7.96 -2.39 -0.02 2.14 16 29 H 0.12 2.49 8.07 -2.38 -0.02 2.47 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.51 7.75 -2.39 -0.02 1.49 16 32 H 0.07 1.57 7.57 -2.38 -0.02 1.55 16 33 H 0.41 14.53 7.74 -92.71 -0.72 13.81 16 34 H 0.01 0.70 7.20 -2.39 -0.02 0.69 16 35 H 0.02 0.83 7.57 -2.39 -0.02 0.82 16 36 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -69.95 309.59 3.26 -66.68 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.30 Total: 18.19 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 5.04 Total: 0.10 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -3.92 Total: -105.43 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.05 Total: -25.15 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.61 kcal Total: -69.95 3.26 -66.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867874019.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.666 kcal (2) G-P(sol) polarization free energy of solvation -69.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds