Wall clock time and date at job start Sun Mar 29 2020 22:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99809 * 2 1 4 4 H 1.48507 * 109.46720 * 240.00179 * 3 2 1 5 5 H 1.48497 * 109.47153 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47438 * 119.99950 * 3 2 1 7 7 C 1.37873 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99635 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00553 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47416 * 179.97438 * 9 7 2 11 11 N 1.46507 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.35311 * 125.86671 * 125.32995 * 11 10 9 13 13 C 1.35359 * 106.17235 * 180.11726 * 12 11 10 14 14 C 1.50700 * 126.74966 * 179.85162 * 13 12 11 15 15 H 1.09002 * 109.48198 * 4.72968 * 14 13 12 16 16 C 1.53100 * 109.49098 * 124.67687 * 14 13 12 17 17 C 1.53179 * 109.15719 * 177.50831 * 16 14 13 18 18 C 1.53177 * 109.10692 * 303.14927 * 17 16 14 19 19 C 1.53089 * 109.16584 * 56.93603 * 18 17 16 20 20 O 1.42902 * 109.41513 * 302.39390 * 19 18 17 21 21 N 1.33770 * 106.49479 * 359.59273 * 13 12 11 22 22 N 1.28630 * 108.88656 * 0.25797 * 21 13 12 23 23 H 0.96997 * 120.00247 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46899 * 59.99981 * 9 7 2 25 25 H 1.08999 * 109.47138 * 300.00925 * 9 7 2 26 26 H 1.08996 * 109.47205 * 60.00399 * 10 9 7 27 27 H 1.08999 * 109.47740 * 300.00032 * 10 9 7 28 28 H 1.08000 * 126.91532 * 359.96305 * 12 11 10 29 29 H 1.08997 * 109.45514 * 57.64152 * 16 14 13 30 30 H 1.08999 * 109.59440 * 297.45372 * 16 14 13 31 31 H 1.09002 * 109.54484 * 183.23723 * 17 16 14 32 32 H 1.08999 * 109.54222 * 63.05889 * 17 16 14 33 33 H 1.08999 * 109.51892 * 176.84392 * 18 17 16 34 34 H 1.08995 * 109.52152 * 296.96844 * 18 17 16 35 35 H 1.09006 * 109.47817 * 62.37062 * 19 18 17 36 36 H 1.09001 * 109.48474 * 182.39360 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 1.6653 -5.9346 -0.8925 13 6 0.7980 -6.9052 -0.5214 14 6 0.5841 -8.2321 -1.2031 15 1 1.3027 -8.3437 -2.0151 16 6 0.7801 -9.3639 -0.1909 17 6 0.5000 -10.7050 -0.8761 18 6 -0.9159 -10.6837 -1.4600 19 6 -1.0444 -9.5011 -2.4236 20 8 -0.7430 -8.2885 -1.7302 21 7 0.1723 -6.4574 0.5729 22 7 0.6184 -5.2849 0.8571 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5576 -0.8880 25 1 0.6247 -2.5563 0.8919 26 1 2.8727 -3.6039 0.8909 27 1 2.8714 -3.6047 -0.8890 28 1 2.3411 -5.9559 -1.7348 29 1 0.0903 -9.2294 0.6422 30 1 1.8055 -9.3506 0.1783 31 1 0.5816 -11.5111 -0.1468 32 1 1.2224 -10.8632 -1.6768 33 1 -1.1022 -11.6135 -1.9975 34 1 -1.6411 -10.5778 -0.6533 35 1 -0.3470 -9.6294 -3.2515 36 1 -2.0627 -9.4558 -2.8099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881199567.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:01 Heat of formation + Delta-G solvation = 31.069069 kcal Electronic energy + Delta-G solvation = -17978.439974 eV Core-core repulsion = 15078.225399 eV Total energy + Delta-G solvation = -2900.214575 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.78306 -39.29268 -35.09007 -33.69568 -33.01239 -32.27510 -30.09862 -29.34258 -25.55105 -25.18837 -23.85523 -22.44592 -21.41038 -20.64362 -19.72632 -17.18759 -16.35021 -16.27010 -15.69473 -15.61271 -14.89036 -14.68083 -14.53586 -14.10273 -13.98103 -13.32114 -12.77308 -12.68005 -12.34793 -11.79635 -11.59890 -11.34372 -11.18510 -11.10167 -10.87026 -10.82838 -10.54688 -10.49052 -10.27471 -10.02716 -9.52359 -9.43864 -9.28437 -8.82733 -8.51507 -6.15468 -4.22748 2.07071 2.79694 2.98705 3.24982 3.30660 3.32007 3.94220 4.33393 4.54518 4.70399 4.71346 4.76441 4.91845 5.05991 5.16512 5.20423 5.28539 5.36789 5.42613 5.56810 5.64927 5.70010 5.83871 5.87152 5.89306 5.99643 6.16804 6.25189 6.40766 6.48134 7.04365 7.23435 7.41931 7.51242 7.79324 8.10979 8.82329 9.03548 9.42728 10.95502 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.058118 B = 0.003713 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.659461 B = 7538.301676 C = 7688.916839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.534 4.534 8 H 0.060 0.940 9 C 0.015 3.985 10 C 0.112 3.888 11 N -0.270 5.270 12 C -0.043 4.043 13 C -0.034 4.034 14 C 0.187 3.813 15 H 0.070 0.930 16 C -0.144 4.144 17 C -0.121 4.121 18 C -0.158 4.158 19 C 0.061 3.939 20 O -0.368 6.368 21 N -0.265 5.265 22 N -0.072 5.072 23 H 0.265 0.735 24 H 0.024 0.976 25 H 0.038 0.962 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.185 0.815 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.690 -19.306 -5.198 20.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.078 0.922 9 C -0.023 4.023 10 C -0.007 4.007 11 N -0.062 5.062 12 C -0.196 4.196 13 C -0.174 4.174 14 C 0.128 3.872 15 H 0.087 0.913 16 C -0.182 4.182 17 C -0.159 4.159 18 C -0.195 4.195 19 C -0.016 4.016 20 O -0.287 6.287 21 N -0.131 5.131 22 N -0.053 5.053 23 H 0.075 0.925 24 H 0.042 0.958 25 H 0.056 0.944 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.202 0.798 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.625 -18.572 -3.896 19.157 hybrid contribution 1.291 0.581 -1.097 1.791 sum 3.916 -17.991 -4.993 19.077 Atomic orbital electron populations 1.69965 1.06168 1.27283 1.48883 1.25002 0.94883 0.99484 0.94671 0.86533 0.79487 0.82551 0.78713 1.20086 1.21104 1.20014 1.20898 0.92988 0.90109 1.53257 0.92157 1.19401 0.93833 0.89700 0.99366 1.22758 0.95825 0.78539 1.03604 1.47945 1.25752 1.15014 1.17496 1.23287 1.06431 0.89809 1.00103 1.21319 0.99967 0.98164 0.97937 1.19910 0.85001 0.88774 0.93531 0.91250 1.22139 1.02956 0.93732 0.99380 1.21600 0.96616 0.97497 1.00174 1.22204 0.97985 0.98911 1.00428 1.22564 1.01313 0.84304 0.93436 1.88084 1.30431 1.37176 1.72990 1.75012 1.21330 1.03318 1.13459 1.78353 1.03692 1.08256 1.14949 0.92497 0.95757 0.94368 0.89152 0.88741 0.79829 0.90010 0.90928 0.91428 0.91924 0.91102 0.90829 0.93323 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.53 -14.25 9.11 -34.44 -0.31 -14.57 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.01 0.37 5.10 -27.89 -0.14 0.23 16 10 C 0.11 2.15 6.39 -4.04 -0.03 2.12 16 11 N -0.27 -5.21 3.44 -61.26 -0.21 -5.42 16 12 C -0.04 -0.70 11.49 -17.04 -0.20 -0.89 16 13 C -0.03 -0.58 6.14 -82.77 -0.51 -1.09 16 14 C 0.19 2.50 3.14 -27.83 -0.09 2.41 16 15 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 16 C -0.14 -1.65 5.40 -26.59 -0.14 -1.80 16 17 C -0.12 -1.06 6.02 -26.55 -0.16 -1.22 16 18 C -0.16 -1.37 6.14 -26.59 -0.16 -1.54 16 19 C 0.06 0.61 6.84 37.20 0.25 0.87 16 20 O -0.37 -5.41 10.39 -35.23 -0.37 -5.78 16 21 N -0.26 -5.45 12.40 33.29 0.41 -5.04 16 22 N -0.07 -1.58 12.91 60.35 0.78 -0.81 16 23 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.04 1.06 8.12 -51.93 -0.42 0.64 16 26 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 27 H 0.09 1.55 8.07 -51.93 -0.42 1.13 16 28 H 0.18 2.12 8.06 -52.49 -0.42 1.70 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 304.37 15.07 4.59 4.59 Total: -1.00 -32.34 304.37 -6.12 -38.46 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -5.45 Total: -2.50 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -1.58 Total: -13.82 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 1.72 Total: -36.74 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.37 Total: -5.78 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.34 -6.12 -38.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881199567.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.525 kcal (2) G-P(sol) polarization free energy of solvation -32.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds