Wall clock time and date at job start Sun Mar 29 2020 22:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99809 * 2 1 4 4 H 1.48507 * 109.46720 * 240.00179 * 3 2 1 5 5 H 1.48497 * 109.47153 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47438 * 119.99950 * 3 2 1 7 7 C 1.37873 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99635 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00553 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47416 * 179.97438 * 9 7 2 11 11 N 1.46507 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.35311 * 125.86671 * 125.32995 * 11 10 9 13 13 C 1.35359 * 106.17235 * 180.11726 * 12 11 10 14 14 C 1.50700 * 126.74966 * 179.85162 * 13 12 11 15 15 H 1.09002 * 109.48198 * 4.72968 * 14 13 12 16 16 C 1.53100 * 109.49098 * 124.67687 * 14 13 12 17 17 C 1.53179 * 109.15719 * 177.50831 * 16 14 13 18 18 C 1.53177 * 109.10692 * 303.14927 * 17 16 14 19 19 C 1.53089 * 109.16584 * 56.93603 * 18 17 16 20 20 O 1.42902 * 109.41513 * 302.39390 * 19 18 17 21 21 N 1.33770 * 106.49479 * 359.59273 * 13 12 11 22 22 N 1.28630 * 108.88656 * 0.25797 * 21 13 12 23 23 H 0.96997 * 120.00247 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46899 * 59.99981 * 9 7 2 25 25 H 1.08999 * 109.47138 * 300.00925 * 9 7 2 26 26 H 1.08996 * 109.47205 * 60.00399 * 10 9 7 27 27 H 1.08999 * 109.47740 * 300.00032 * 10 9 7 28 28 H 1.08000 * 126.91532 * 359.96305 * 12 11 10 29 29 H 1.08997 * 109.45514 * 57.64152 * 16 14 13 30 30 H 1.08999 * 109.59440 * 297.45372 * 16 14 13 31 31 H 1.09002 * 109.54484 * 183.23723 * 17 16 14 32 32 H 1.08999 * 109.54222 * 63.05889 * 17 16 14 33 33 H 1.08999 * 109.51892 * 176.84392 * 18 17 16 34 34 H 1.08995 * 109.52152 * 296.96844 * 18 17 16 35 35 H 1.09006 * 109.47817 * 62.37062 * 19 18 17 36 36 H 1.09001 * 109.48474 * 182.39360 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 1.6653 -5.9346 -0.8925 13 6 0.7980 -6.9052 -0.5214 14 6 0.5841 -8.2321 -1.2031 15 1 1.3027 -8.3437 -2.0151 16 6 0.7801 -9.3639 -0.1909 17 6 0.5000 -10.7050 -0.8761 18 6 -0.9159 -10.6837 -1.4600 19 6 -1.0444 -9.5011 -2.4236 20 8 -0.7430 -8.2885 -1.7302 21 7 0.1723 -6.4574 0.5729 22 7 0.6184 -5.2849 0.8571 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5576 -0.8880 25 1 0.6247 -2.5563 0.8919 26 1 2.8727 -3.6039 0.8909 27 1 2.8714 -3.6047 -0.8890 28 1 2.3411 -5.9559 -1.7348 29 1 0.0903 -9.2294 0.6422 30 1 1.8055 -9.3506 0.1783 31 1 0.5816 -11.5111 -0.1468 32 1 1.2224 -10.8632 -1.6768 33 1 -1.1022 -11.6135 -1.9975 34 1 -1.6411 -10.5778 -0.6533 35 1 -0.3470 -9.6294 -3.2515 36 1 -2.0627 -9.4558 -2.8099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881199567.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:01 Heat of formation + Delta-G solvation = 9.073061 kcal Electronic energy + Delta-G solvation = -17979.393792 eV Core-core repulsion = 15078.225399 eV Total energy + Delta-G solvation = -2901.168394 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.20406 -40.19927 -36.74090 -34.85075 -34.52856 -33.49167 -31.80879 -30.55748 -27.38071 -26.16663 -24.76869 -24.19445 -22.79600 -21.81934 -20.80841 -18.92218 -17.87668 -17.43883 -16.94197 -16.84239 -16.46036 -15.87749 -15.52199 -15.33048 -15.16061 -14.65399 -14.37490 -13.64245 -13.55553 -13.50755 -12.98960 -12.80045 -12.64870 -12.31417 -12.26019 -11.99289 -11.97319 -11.74447 -11.62158 -11.47493 -11.27363 -10.88943 -10.62399 -10.48600 -10.10334 -8.26153 -6.41232 0.71162 1.41044 1.43058 1.45939 1.53410 1.60485 2.39737 2.96264 3.09029 3.43420 3.74006 3.90616 3.94600 3.99641 4.09041 4.17621 4.25824 4.29649 4.37002 4.56148 4.57979 4.70594 4.84805 4.93017 4.98898 5.06928 5.12022 5.21366 5.27841 5.29967 5.44745 5.47134 5.58588 5.77939 6.04387 6.36022 6.75440 7.30309 7.58955 8.86401 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.058118 B = 0.003713 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.659461 B = 7538.301676 C = 7688.916839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.259 1.259 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.083 0.917 9 C 0.022 3.978 10 C 0.125 3.875 11 N -0.279 5.279 12 C -0.027 4.027 13 C -0.044 4.044 14 C 0.185 3.815 15 H 0.105 0.895 16 C -0.141 4.141 17 C -0.116 4.116 18 C -0.155 4.155 19 C 0.053 3.947 20 O -0.407 6.407 21 N -0.293 5.293 22 N -0.129 5.129 23 H 0.265 0.735 24 H -0.010 1.010 25 H -0.006 1.006 26 H 0.102 0.898 27 H 0.134 0.866 28 H 0.236 0.764 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.379 -20.487 -7.051 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.799 3.201 4 H -0.183 1.183 5 H -0.216 1.216 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.101 0.899 9 C -0.016 4.016 10 C 0.006 3.994 11 N -0.072 5.072 12 C -0.180 4.180 13 C -0.184 4.184 14 C 0.126 3.874 15 H 0.123 0.877 16 C -0.179 4.179 17 C -0.153 4.153 18 C -0.193 4.193 19 C -0.023 4.023 20 O -0.327 6.327 21 N -0.159 5.159 22 N -0.108 5.108 23 H 0.073 0.927 24 H 0.008 0.992 25 H 0.013 0.987 26 H 0.121 0.879 27 H 0.152 0.848 28 H 0.253 0.747 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.321 -19.777 -5.736 21.268 hybrid contribution 0.400 0.844 -0.566 1.092 sum 5.721 -18.933 -6.302 20.758 Atomic orbital electron populations 1.70142 1.08356 1.28210 1.50715 1.26086 0.95661 1.03967 0.94225 0.85336 0.78009 0.77133 0.79579 1.18328 1.21556 1.18836 1.21439 0.94222 0.90652 1.51912 0.89865 1.19149 0.94287 0.92504 0.95650 1.22540 0.94128 0.76576 1.06143 1.47931 1.25621 1.15577 1.18038 1.24130 1.05993 0.88005 0.99830 1.22124 0.99357 0.99927 0.96988 1.20175 0.85473 0.87174 0.94619 0.87712 1.22098 1.02541 0.94994 0.98310 1.21602 0.96991 0.95844 1.00874 1.22196 0.97674 0.99565 0.99860 1.22827 1.02269 0.83179 0.94004 1.88020 1.31242 1.39648 1.73759 1.74950 1.22254 1.03302 1.15377 1.78338 1.05917 1.09406 1.17150 0.92655 0.99152 0.98743 0.87939 0.84791 0.74726 0.93228 0.90116 0.90388 0.89621 0.88398 0.92741 0.90983 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.16 13.29 21.45 0.28 -56.88 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 3 Si 0.98 42.44 29.54 68.60 2.03 44.47 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.54 -28.95 9.11 25.60 0.23 -28.71 16 8 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 9 C 0.02 1.14 5.10 29.85 0.15 1.29 16 10 C 0.13 4.67 6.39 86.38 0.55 5.23 16 11 N -0.28 -10.68 3.44 -347.73 -1.20 -11.88 16 12 C -0.03 -0.81 11.49 83.49 0.96 0.15 16 13 C -0.04 -1.45 6.14 41.60 0.26 -1.20 16 14 C 0.18 4.59 3.14 29.88 0.09 4.68 16 15 H 0.11 1.83 8.12 -2.39 -0.02 1.81 16 16 C -0.14 -3.06 5.40 30.69 0.17 -2.89 16 17 C -0.12 -1.69 6.02 30.71 0.18 -1.51 16 18 C -0.16 -2.38 6.14 30.68 0.19 -2.19 16 19 C 0.05 0.96 6.84 72.01 0.49 1.46 16 20 O -0.41 -11.60 10.39 -148.98 -1.55 -13.15 16 21 N -0.29 -12.45 12.40 -48.60 -0.60 -13.05 16 22 N -0.13 -5.86 12.91 37.02 0.48 -5.38 16 23 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 24 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 25 H -0.01 -0.35 8.12 -2.39 -0.02 -0.37 16 26 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 27 H 0.13 3.93 8.07 -2.39 -0.02 3.91 16 28 H 0.24 4.26 8.06 -2.91 -0.02 4.23 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -75.08 304.37 4.23 -70.85 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 1.05 Total: 8.30 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: 3.74 Total: -23.28 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -1.04 Total: -87.19 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -1.55 Total: -13.15 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -75.08 4.23 -70.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881199567.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.921 kcal (2) G-P(sol) polarization free energy of solvation -75.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds