Wall clock time and date at job start Sun Mar 29 2020 22:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86800 * 120.00320 * 2 1 4 4 H 1.48503 * 109.47223 * 270.00178 * 3 2 1 5 5 H 1.48500 * 109.47057 * 30.00076 * 3 2 1 6 6 H 1.48500 * 109.47263 * 150.00185 * 3 2 1 7 7 C 1.37877 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00293 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99846 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47064 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.47083 * 180.02562 * 10 9 7 12 12 C 1.35307 * 125.87073 * 124.99850 * 11 10 9 13 13 C 1.35352 * 106.17588 * 180.02562 * 12 11 10 14 14 C 1.50698 * 126.75336 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.48080 * 245.01995 * 14 13 12 16 16 C 1.53094 * 109.47846 * 124.99921 * 14 13 12 17 17 C 1.53183 * 109.15859 * 182.39779 * 16 14 13 18 18 C 1.53176 * 109.03838 * 56.98139 * 17 16 14 19 19 C 1.53093 * 109.16348 * 303.01796 * 18 17 16 20 20 O 1.42902 * 109.48972 * 5.03951 * 14 13 12 21 21 N 1.33771 * 106.49641 * 0.26076 * 13 12 11 22 22 N 1.28641 * 108.88580 * 359.56291 * 21 13 12 23 23 H 0.97008 * 119.99726 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.47199 * 59.99732 * 9 7 2 25 25 H 1.08996 * 109.46880 * 299.99678 * 9 7 2 26 26 H 1.09002 * 109.47439 * 59.99689 * 10 9 7 27 27 H 1.09006 * 109.47031 * 299.99613 * 10 9 7 28 28 H 1.08002 * 126.91606 * 0.05494 * 12 11 10 29 29 H 1.08997 * 109.52488 * 62.49866 * 16 14 13 30 30 H 1.08998 * 109.57480 * 302.33254 * 16 14 13 31 31 H 1.09002 * 109.54436 * 297.11028 * 17 16 14 32 32 H 1.09003 * 109.54353 * 176.84876 * 17 16 14 33 33 H 1.09004 * 109.52469 * 183.11228 * 18 17 16 34 34 H 1.09001 * 109.52097 * 62.92137 * 18 17 16 35 35 H 1.09002 * 109.48198 * 177.59219 * 19 18 17 36 36 H 1.08999 * 109.48029 * 297.61833 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 7 1.5125 -4.9308 0.0012 12 6 1.6617 -5.9320 -0.8966 13 6 0.7971 -6.9045 -0.5241 14 6 0.5838 -8.2312 -1.2063 15 1 -0.4275 -8.2737 -1.6106 16 6 0.7765 -9.3629 -0.1933 17 6 0.6173 -10.7089 -0.9070 18 6 1.6216 -10.7845 -2.0611 19 6 1.3963 -9.5979 -3.0018 20 8 1.5282 -8.3784 -2.2686 21 7 0.1654 -6.4542 0.5657 22 7 0.6160 -5.2844 0.8545 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.8711 -3.6040 0.8922 27 1 2.8724 -3.6048 -0.8878 28 1 2.3355 -5.9516 -1.7405 29 1 0.0283 -9.2778 0.5947 30 1 1.7736 -9.2973 0.2422 31 1 -0.3960 -10.7961 -1.2991 32 1 0.8085 -11.5194 -0.2037 33 1 1.4779 -11.7159 -2.6088 34 1 2.6361 -10.7470 -1.6641 35 1 2.1360 -9.6228 -3.8020 36 1 0.3957 -9.6582 -3.4298 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881199568.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:04 Heat of formation + Delta-G solvation = 30.706670 kcal Electronic energy + Delta-G solvation = -18007.774956 eV Core-core repulsion = 15107.544666 eV Total energy + Delta-G solvation = -2900.230290 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.75915 -39.38577 -35.09363 -33.79162 -33.02112 -32.22975 -30.04145 -29.33137 -25.66598 -25.13346 -23.94758 -22.30054 -21.39267 -20.46205 -19.95029 -17.19913 -16.39837 -16.19410 -15.84688 -15.51025 -14.92572 -14.75637 -14.53299 -14.07978 -13.91145 -13.30026 -12.91310 -12.75492 -12.36620 -11.75296 -11.59666 -11.33267 -11.27800 -11.11065 -10.88916 -10.81846 -10.70330 -10.43676 -10.24691 -10.02568 -9.69200 -9.41806 -9.25368 -8.68112 -8.51315 -6.15482 -4.22207 2.16971 2.89837 3.01650 3.24275 3.31344 3.33852 3.49186 4.34015 4.54836 4.65275 4.69843 4.87817 4.91109 5.09833 5.20326 5.20952 5.33784 5.40301 5.46809 5.58087 5.67362 5.71877 5.77486 5.86143 5.89708 6.01100 6.18255 6.21515 6.33446 6.51939 7.07279 7.14812 7.42726 7.51848 7.79929 8.11761 8.83026 9.02840 9.43252 10.95593 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.055715 B = 0.003768 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.440310 B = 7429.358237 C = 7649.868989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.532 4.532 8 H 0.061 0.939 9 C 0.015 3.985 10 C 0.112 3.888 11 N -0.272 5.272 12 C -0.031 4.031 13 C -0.039 4.039 14 C 0.189 3.811 15 H 0.072 0.928 16 C -0.141 4.141 17 C -0.123 4.123 18 C -0.158 4.158 19 C 0.064 3.936 20 O -0.377 6.377 21 N -0.278 5.278 22 N -0.072 5.072 23 H 0.264 0.736 24 H 0.024 0.976 25 H 0.038 0.962 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.187 0.813 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.881 -19.434 -5.390 20.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.571 4.571 8 H 0.079 0.921 9 C -0.023 4.023 10 C -0.007 4.007 11 N -0.065 5.065 12 C -0.183 4.183 13 C -0.178 4.178 14 C 0.129 3.871 15 H 0.090 0.910 16 C -0.179 4.179 17 C -0.160 4.160 18 C -0.195 4.195 19 C -0.013 4.013 20 O -0.296 6.296 21 N -0.145 5.145 22 N -0.052 5.052 23 H 0.074 0.926 24 H 0.042 0.958 25 H 0.056 0.944 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.204 0.796 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.097 -18.714 -4.154 19.418 hybrid contribution 0.951 0.588 -1.003 1.502 sum 4.048 -18.126 -5.158 19.275 Atomic orbital electron populations 1.69977 1.06174 1.27131 1.49109 1.25001 0.94885 0.99496 0.94690 0.86474 0.79754 0.82873 0.78208 1.20498 1.21029 1.19680 1.20946 0.93054 0.90101 1.52983 0.92089 1.19407 0.93851 0.89772 0.99288 1.22748 0.95805 0.78523 1.03647 1.47931 1.25864 1.15353 1.17368 1.23310 1.05724 0.89407 0.99847 1.21325 1.00500 0.97733 0.98256 1.19729 0.92157 0.88749 0.86441 0.91000 1.22115 1.03636 0.93573 0.98578 1.21621 0.99320 0.97533 0.97553 1.22215 1.00603 0.98927 0.97798 1.22559 1.01531 0.83591 0.93596 1.87866 1.56659 1.38952 1.46107 1.74960 1.22333 1.03884 1.13308 1.78321 1.03709 1.08109 1.15023 0.92589 0.95793 0.94402 0.89189 0.88713 0.79580 0.89911 0.91090 0.91693 0.91384 0.90996 0.91010 0.88715 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.53 -14.27 9.11 -34.44 -0.31 -14.58 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.01 0.37 5.10 -27.88 -0.14 0.23 16 10 C 0.11 2.19 6.39 -4.04 -0.03 2.17 16 11 N -0.27 -5.36 3.44 -61.26 -0.21 -5.57 16 12 C -0.03 -0.52 10.92 -17.05 -0.19 -0.71 16 13 C -0.04 -0.67 6.47 -82.78 -0.54 -1.21 16 14 C 0.19 2.52 3.20 -27.84 -0.09 2.43 16 15 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 16 C -0.14 -1.61 5.40 -26.59 -0.14 -1.76 16 17 C -0.12 -1.05 6.03 -26.55 -0.16 -1.21 16 18 C -0.16 -1.22 6.14 -26.59 -0.16 -1.39 16 19 C 0.06 0.56 6.84 37.21 0.25 0.82 16 20 O -0.38 -4.69 9.80 -35.23 -0.35 -5.04 16 21 N -0.28 -5.55 12.40 33.29 0.41 -5.14 16 22 N -0.07 -1.56 12.91 60.35 0.78 -0.78 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 24 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 1.05 8.12 -51.93 -0.42 0.63 16 26 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 27 H 0.09 1.61 8.07 -51.93 -0.42 1.19 16 28 H 0.19 2.62 7.94 -52.49 -0.42 2.20 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 303.49 15.07 4.57 4.57 Total: -1.00 -31.16 303.49 -6.13 -37.28 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -5.45 Total: -2.14 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -1.60 Total: -13.58 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 1.72 Total: -36.95 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.35 Total: -5.04 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.16 -6.13 -37.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881199568.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.990 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds