Wall clock time and date at job start Sun Mar 29 2020 22:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86800 * 120.00320 * 2 1 4 4 H 1.48503 * 109.47223 * 270.00178 * 3 2 1 5 5 H 1.48500 * 109.47057 * 30.00076 * 3 2 1 6 6 H 1.48500 * 109.47263 * 150.00185 * 3 2 1 7 7 C 1.37877 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00293 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99846 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47064 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.47083 * 180.02562 * 10 9 7 12 12 C 1.35307 * 125.87073 * 124.99850 * 11 10 9 13 13 C 1.35352 * 106.17588 * 180.02562 * 12 11 10 14 14 C 1.50698 * 126.75336 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.48080 * 245.01995 * 14 13 12 16 16 C 1.53094 * 109.47846 * 124.99921 * 14 13 12 17 17 C 1.53183 * 109.15859 * 182.39779 * 16 14 13 18 18 C 1.53176 * 109.03838 * 56.98139 * 17 16 14 19 19 C 1.53093 * 109.16348 * 303.01796 * 18 17 16 20 20 O 1.42902 * 109.48972 * 5.03951 * 14 13 12 21 21 N 1.33771 * 106.49641 * 0.26076 * 13 12 11 22 22 N 1.28641 * 108.88580 * 359.56291 * 21 13 12 23 23 H 0.97008 * 119.99726 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.47199 * 59.99732 * 9 7 2 25 25 H 1.08996 * 109.46880 * 299.99678 * 9 7 2 26 26 H 1.09002 * 109.47439 * 59.99689 * 10 9 7 27 27 H 1.09006 * 109.47031 * 299.99613 * 10 9 7 28 28 H 1.08002 * 126.91606 * 0.05494 * 12 11 10 29 29 H 1.08997 * 109.52488 * 62.49866 * 16 14 13 30 30 H 1.08998 * 109.57480 * 302.33254 * 16 14 13 31 31 H 1.09002 * 109.54436 * 297.11028 * 17 16 14 32 32 H 1.09003 * 109.54353 * 176.84876 * 17 16 14 33 33 H 1.09004 * 109.52469 * 183.11228 * 18 17 16 34 34 H 1.09001 * 109.52097 * 62.92137 * 18 17 16 35 35 H 1.09002 * 109.48198 * 177.59219 * 19 18 17 36 36 H 1.08999 * 109.48029 * 297.61833 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 7 1.5125 -4.9308 0.0012 12 6 1.6617 -5.9320 -0.8966 13 6 0.7971 -6.9045 -0.5241 14 6 0.5838 -8.2312 -1.2063 15 1 -0.4275 -8.2737 -1.6106 16 6 0.7765 -9.3629 -0.1933 17 6 0.6173 -10.7089 -0.9070 18 6 1.6216 -10.7845 -2.0611 19 6 1.3963 -9.5979 -3.0018 20 8 1.5282 -8.3784 -2.2686 21 7 0.1654 -6.4542 0.5657 22 7 0.6160 -5.2844 0.8545 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.8711 -3.6040 0.8922 27 1 2.8724 -3.6048 -0.8878 28 1 2.3355 -5.9516 -1.7405 29 1 0.0283 -9.2778 0.5947 30 1 1.7736 -9.2973 0.2422 31 1 -0.3960 -10.7961 -1.2991 32 1 0.8085 -11.5194 -0.2037 33 1 1.4779 -11.7159 -2.6088 34 1 2.6361 -10.7470 -1.6641 35 1 2.1360 -9.6228 -3.8020 36 1 0.3957 -9.6582 -3.4298 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881199568.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:04 Heat of formation + Delta-G solvation = 10.454679 kcal Electronic energy + Delta-G solvation = -18008.653148 eV Core-core repulsion = 15107.544666 eV Total energy + Delta-G solvation = -2901.108482 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.22994 -40.24978 -36.77058 -34.88400 -34.55840 -33.45711 -31.80423 -30.54107 -27.43139 -26.17278 -24.91566 -24.04890 -22.76496 -21.60506 -21.09072 -18.93929 -17.92643 -17.41871 -16.97270 -16.78305 -16.46103 -16.01067 -15.61336 -15.22820 -15.12450 -14.65366 -14.39147 -13.71402 -13.59216 -13.58073 -13.00503 -12.73147 -12.67492 -12.38474 -12.29794 -12.08844 -11.96420 -11.80235 -11.66844 -11.45315 -11.21051 -10.92118 -10.63384 -10.59006 -10.00055 -8.26634 -6.41191 0.70820 1.41503 1.44093 1.47698 1.53850 1.57876 2.39465 2.52654 3.08738 3.48785 3.82249 3.90074 3.92783 3.97733 4.10339 4.17889 4.24699 4.28633 4.41337 4.54724 4.62325 4.70768 4.83553 4.90929 4.95661 5.05298 5.10952 5.18780 5.26223 5.29391 5.42682 5.44572 5.57838 5.76856 6.04282 6.26404 6.75031 7.30088 7.53430 8.86088 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.055715 B = 0.003768 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.440310 B = 7429.358237 C = 7649.868989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.023 3.977 10 C 0.124 3.876 11 N -0.280 5.280 12 C -0.024 4.024 13 C -0.041 4.041 14 C 0.192 3.808 15 H 0.077 0.923 16 C -0.137 4.137 17 C -0.119 4.119 18 C -0.153 4.153 19 C 0.055 3.945 20 O -0.392 6.392 21 N -0.294 5.294 22 N -0.121 5.121 23 H 0.265 0.735 24 H -0.009 1.009 25 H -0.002 1.002 26 H 0.102 0.898 27 H 0.129 0.871 28 H 0.220 0.780 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.113 0.887 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.820 -20.546 -6.790 22.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.180 1.180 7 C -0.582 4.582 8 H 0.099 0.901 9 C -0.015 4.015 10 C 0.005 3.995 11 N -0.073 5.073 12 C -0.176 4.176 13 C -0.181 4.181 14 C 0.132 3.868 15 H 0.095 0.905 16 C -0.175 4.175 17 C -0.157 4.157 18 C -0.191 4.191 19 C -0.021 4.021 20 O -0.311 6.311 21 N -0.160 5.160 22 N -0.100 5.100 23 H 0.074 0.926 24 H 0.010 0.990 25 H 0.016 0.984 26 H 0.121 0.879 27 H 0.147 0.853 28 H 0.237 0.763 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.131 0.869 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.046 -19.849 -5.546 21.218 hybrid contribution 0.320 0.825 -0.627 1.085 sum 5.367 -19.023 -6.173 20.707 Atomic orbital electron populations 1.70139 1.08275 1.28145 1.50738 1.26061 0.95686 1.03876 0.94215 0.85289 0.78625 0.77567 0.78602 1.19523 1.21336 1.17973 1.21457 0.94176 0.90698 1.51871 0.90061 1.19153 0.94226 0.92295 0.95811 1.22538 0.94270 0.76722 1.05940 1.47901 1.25810 1.15739 1.17808 1.23902 1.05670 0.88348 0.99665 1.22019 0.99510 0.99268 0.97314 1.19739 0.92648 0.87270 0.87142 0.90544 1.22058 1.02540 0.94807 0.98116 1.21627 1.00248 0.95820 0.97962 1.22198 0.99939 0.99586 0.97350 1.22864 1.02840 0.82537 0.93854 1.87826 1.56328 1.41036 1.45940 1.74893 1.22854 1.03639 1.14658 1.78309 1.05566 1.09287 1.16863 0.92622 0.99014 0.98402 0.87947 0.85304 0.76342 0.91080 0.92199 0.90788 0.90195 0.88532 0.91501 0.86874 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.98 42.58 29.54 68.60 2.03 44.60 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 7 C -0.54 -29.11 9.11 25.60 0.23 -28.88 16 8 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 9 C 0.02 1.20 5.10 29.85 0.15 1.35 16 10 C 0.12 4.80 6.39 86.38 0.55 5.36 16 11 N -0.28 -11.01 3.44 -347.72 -1.20 -12.21 16 12 C -0.02 -0.78 10.92 83.49 0.91 0.13 16 13 C -0.04 -1.40 6.47 41.60 0.27 -1.13 16 14 C 0.19 4.89 3.20 29.88 0.10 4.98 16 15 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 16 C -0.14 -3.01 5.40 30.69 0.17 -2.84 16 17 C -0.12 -1.76 6.03 30.71 0.19 -1.57 16 18 C -0.15 -1.91 6.14 30.68 0.19 -1.72 16 19 C 0.05 0.81 6.84 72.01 0.49 1.30 16 20 O -0.39 -8.91 9.80 -148.98 -1.46 -10.37 16 21 N -0.29 -12.02 12.40 -48.60 -0.60 -12.63 16 22 N -0.12 -5.44 12.91 37.02 0.48 -4.96 16 23 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 24 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 25 H 0.00 -0.14 8.12 -2.39 -0.02 -0.16 16 26 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 27 H 0.13 4.08 8.07 -2.38 -0.02 4.06 16 28 H 0.22 5.56 7.94 -2.91 -0.02 5.54 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -69.62 303.49 4.29 -65.33 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 1.05 Total: 9.23 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: 3.71 Total: -22.56 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -1.04 Total: -86.24 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -1.46 Total: -10.37 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -69.62 4.29 -65.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881199568.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.786 kcal (2) G-P(sol) polarization free energy of solvation -69.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds