Wall clock time and date at job start Sun Mar 29 2020 23:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34670 * 125.98795 * 2 1 4 4 N 1.36884 * 106.81415 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.39196 * 179.73658 * 4 3 2 6 6 C 1.52998 * 109.46765 * 234.14066 * 5 4 3 7 7 C 1.52998 * 109.47364 * 354.14127 * 5 4 3 8 8 C 1.50694 * 109.46899 * 114.14258 * 5 4 3 9 9 O 1.21287 * 120.00040 * 4.43119 * 8 5 4 10 10 N 1.34780 * 120.00341 * 184.43075 * 8 5 4 11 11 C 1.46495 * 120.00304 * 179.97438 * 10 8 5 12 12 C 1.50700 * 109.47092 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00083 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00076 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00088 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99980 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47303 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47110 * 120.00316 * 16 14 12 19 19 H 1.48503 * 109.47058 * 240.00216 * 16 14 12 20 20 C 1.35035 * 107.20638 * 0.02562 * 4 3 2 21 21 N 1.30502 * 108.70097 * 0.02562 * 20 4 3 22 22 H 1.09003 * 109.47406 * 90.00200 * 1 2 3 23 23 H 1.09005 * 109.46941 * 209.99673 * 1 2 3 24 24 H 1.08994 * 109.46952 * 329.99782 * 1 2 3 25 25 H 1.08000 * 126.58775 * 0.03662 * 3 2 1 26 26 H 1.09000 * 109.47233 * 60.00851 * 6 5 4 27 27 H 1.09003 * 109.46754 * 180.02562 * 6 5 4 28 28 H 1.08997 * 109.47271 * 300.00080 * 6 5 4 29 29 H 1.09001 * 109.47018 * 59.99763 * 7 5 4 30 30 H 1.08995 * 109.47122 * 179.97438 * 7 5 4 31 31 H 1.08997 * 109.47321 * 300.00187 * 7 5 4 32 32 H 0.96995 * 119.99502 * 0.02562 * 10 8 5 33 33 H 1.08997 * 109.47511 * 300.00134 * 11 10 8 34 34 H 1.09003 * 109.46987 * 60.00344 * 11 10 8 35 35 H 0.96994 * 119.99956 * 179.97438 * 15 14 12 36 36 H 1.08001 * 125.65072 * 180.02562 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2984 1.0897 0.0000 4 7 3.5913 0.6401 -0.0006 5 6 4.7996 1.4685 -0.0062 6 6 5.6958 1.0551 -1.1753 7 6 4.4086 2.9398 -0.1587 8 6 5.5449 1.2785 1.2897 9 8 5.1536 0.4661 2.1008 10 7 6.6463 2.0113 1.5474 11 6 7.3705 1.8270 2.8074 12 6 8.5536 2.7596 2.8479 13 1 8.7465 3.4235 2.0182 14 6 9.3892 2.7660 3.9446 15 7 9.1540 1.9579 4.9553 16 14 10.8553 3.9225 3.9950 17 1 10.8982 4.7222 2.7445 18 1 10.7272 4.8336 5.1606 19 1 12.1058 3.1312 4.1202 20 6 3.5449 -0.7095 -0.0015 21 7 2.2952 -1.0852 -0.0020 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 1.9750 2.1201 0.0006 26 1 5.1568 1.1926 -2.1127 27 1 6.5951 1.6712 -1.1793 28 1 5.9744 0.0070 -1.0667 29 1 3.7701 3.2343 0.6741 30 1 5.3076 3.5561 -0.1625 31 1 3.8695 3.0772 -1.0960 32 1 6.9590 2.6613 0.8989 33 1 6.7066 2.0465 3.6436 34 1 7.7173 0.7962 2.8798 35 1 9.7420 1.9622 5.7266 36 1 4.4004 -1.3687 -0.0017 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897591599.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:17 Heat of formation + Delta-G solvation = 15.171582 kcal Electronic energy + Delta-G solvation = -18478.778436 eV Core-core repulsion = 15577.874494 eV Total energy + Delta-G solvation = -2900.903942 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.08832 -39.27763 -35.66339 -34.45446 -32.56080 -31.58602 -30.46113 -28.04199 -27.37505 -26.27241 -23.89761 -22.63489 -21.05720 -19.87657 -19.39492 -17.86680 -16.57950 -16.00451 -15.18041 -14.96354 -14.65746 -14.40071 -14.11102 -13.71092 -13.41931 -13.11588 -13.00481 -12.67404 -12.50796 -12.36596 -12.26355 -12.05147 -11.92994 -11.86954 -11.41107 -11.05537 -10.98990 -10.41611 -9.75278 -9.72036 -9.50138 -8.98462 -8.86452 -8.10880 -8.08571 -6.26448 -4.34654 2.22563 2.80365 2.99902 3.16969 3.24190 3.26762 3.34918 3.76929 4.25362 4.44823 4.58218 4.78112 4.90167 5.03326 5.10046 5.26215 5.35092 5.40791 5.44825 5.47866 5.53090 5.76108 5.80132 5.85167 5.97243 6.09906 6.51287 6.96272 7.12679 7.18454 7.36651 7.37918 7.52476 7.84174 8.32385 8.38215 8.60674 8.84270 9.32251 10.83635 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.043724 B = 0.004571 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.233119 B = 6123.955238 C = 6334.567465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.008 4.008 3 C -0.058 4.058 4 N -0.433 5.433 5 C 0.138 3.862 6 C -0.153 4.153 7 C -0.153 4.153 8 C 0.492 3.508 9 O -0.534 6.534 10 N -0.701 5.701 11 C 0.250 3.750 12 C -0.546 4.546 13 H 0.064 0.936 14 C 0.065 3.935 15 N -0.883 5.883 16 Si 0.905 3.095 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.281 1.281 20 C 0.215 3.785 21 N -0.500 5.500 22 H 0.062 0.938 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.169 0.831 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.391 0.609 33 H 0.028 0.972 34 H 0.029 0.971 35 H 0.267 0.733 36 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.531 2.370 -13.357 16.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.137 4.137 3 C -0.190 4.190 4 N -0.115 5.115 5 C 0.049 3.951 6 C -0.211 4.211 7 C -0.211 4.211 8 C 0.274 3.726 9 O -0.412 6.412 10 N -0.350 5.350 11 C 0.130 3.870 12 C -0.584 4.584 13 H 0.082 0.918 14 C -0.139 4.139 15 N -0.520 5.520 16 Si 0.732 3.268 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.068 4.068 21 N -0.219 5.219 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.186 0.814 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.224 0.776 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -9.861 1.015 -12.543 15.987 hybrid contribution 1.448 1.740 0.002 2.264 sum -8.413 2.754 -12.540 15.350 Atomic orbital electron populations 1.19958 0.88083 1.02344 1.01625 1.20629 0.96255 0.88748 1.08076 1.22273 0.82937 1.00255 1.13573 1.45197 1.05388 1.07353 1.53557 1.20903 0.85010 0.92795 0.96426 1.22157 0.99405 1.03504 0.95995 1.22114 1.03847 0.91543 1.03564 1.20252 0.82186 0.82722 0.87429 1.90750 1.67035 1.35597 1.47772 1.46438 1.26303 1.39201 1.23021 1.19183 0.90711 0.97685 0.79456 1.21210 1.10634 1.22342 1.04250 0.91770 1.24956 0.98069 0.95786 0.95123 1.69980 1.38133 1.36892 1.07044 0.86345 0.81890 0.80395 0.78189 1.19598 1.20735 1.20711 1.24689 0.96695 0.81963 1.03481 1.70180 1.00359 1.30317 1.21039 0.91880 0.91448 0.91706 0.81414 0.90763 0.89569 0.91013 0.90881 0.89504 0.90571 0.77570 0.95383 0.95288 0.92357 0.78625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.70 10.42 36.01 0.38 -0.33 16 2 C -0.01 -0.12 7.09 -82.85 -0.59 -0.71 16 3 C -0.06 -0.82 10.39 -16.56 -0.17 -0.99 16 4 N -0.43 -6.54 2.37 -105.82 -0.25 -6.79 16 5 C 0.14 1.87 1.07 -132.97 -0.14 1.73 16 6 C -0.15 -1.63 8.38 37.16 0.31 -1.32 16 7 C -0.15 -1.61 7.28 37.16 0.27 -1.34 16 8 C 0.49 9.26 6.49 -10.99 -0.07 9.19 16 9 O -0.53 -12.64 15.66 5.55 0.09 -12.55 16 10 N -0.70 -13.57 5.37 -61.48 -0.33 -13.90 16 11 C 0.25 6.33 5.43 -5.20 -0.03 6.30 16 12 C -0.55 -14.14 9.28 -34.44 -0.32 -14.46 16 13 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.88 -25.41 13.29 55.43 0.74 -24.68 16 16 Si 0.90 20.16 29.54 -169.99 -5.02 15.13 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 C 0.21 3.54 10.84 -90.38 -0.98 2.56 16 21 N -0.50 -8.73 11.25 -10.88 -0.12 -8.85 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.17 1.85 7.27 -52.49 -0.38 1.47 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 0.81 7.88 -51.93 -0.41 0.40 16 28 H 0.07 0.81 7.73 -51.93 -0.40 0.40 16 29 H 0.07 0.83 7.68 -51.93 -0.40 0.44 16 30 H 0.09 0.80 7.32 -51.93 -0.38 0.42 16 31 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.39 6.28 7.21 -40.82 -0.29 5.98 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.20 2.91 7.92 -52.49 -0.42 2.50 16 LS Contribution 306.77 15.07 4.62 4.62 Total: -1.00 -33.43 306.77 -6.89 -40.32 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.17 Total: 4.44 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -1.44 Total: 2.26 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.03 Total: -54.22 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.55 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.43 -6.89 -40.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897591599.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.487 kcal (2) G-P(sol) polarization free energy of solvation -33.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds