Wall clock time and date at job start Sun Mar 29 2020 23:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34670 * 125.98795 * 2 1 4 4 N 1.36884 * 106.81415 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.39196 * 179.73658 * 4 3 2 6 6 C 1.52998 * 109.46765 * 234.14066 * 5 4 3 7 7 C 1.52998 * 109.47364 * 354.14127 * 5 4 3 8 8 C 1.50694 * 109.46899 * 114.14258 * 5 4 3 9 9 O 1.21287 * 120.00040 * 4.43119 * 8 5 4 10 10 N 1.34780 * 120.00341 * 184.43075 * 8 5 4 11 11 C 1.46495 * 120.00304 * 179.97438 * 10 8 5 12 12 C 1.50700 * 109.47092 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00083 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00076 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00088 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99980 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47303 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47110 * 120.00316 * 16 14 12 19 19 H 1.48503 * 109.47058 * 240.00216 * 16 14 12 20 20 C 1.35035 * 107.20638 * 0.02562 * 4 3 2 21 21 N 1.30502 * 108.70097 * 0.02562 * 20 4 3 22 22 H 1.09003 * 109.47406 * 90.00200 * 1 2 3 23 23 H 1.09005 * 109.46941 * 209.99673 * 1 2 3 24 24 H 1.08994 * 109.46952 * 329.99782 * 1 2 3 25 25 H 1.08000 * 126.58775 * 0.03662 * 3 2 1 26 26 H 1.09000 * 109.47233 * 60.00851 * 6 5 4 27 27 H 1.09003 * 109.46754 * 180.02562 * 6 5 4 28 28 H 1.08997 * 109.47271 * 300.00080 * 6 5 4 29 29 H 1.09001 * 109.47018 * 59.99763 * 7 5 4 30 30 H 1.08995 * 109.47122 * 179.97438 * 7 5 4 31 31 H 1.08997 * 109.47321 * 300.00187 * 7 5 4 32 32 H 0.96995 * 119.99502 * 0.02562 * 10 8 5 33 33 H 1.08997 * 109.47511 * 300.00134 * 11 10 8 34 34 H 1.09003 * 109.46987 * 60.00344 * 11 10 8 35 35 H 0.96994 * 119.99956 * 179.97438 * 15 14 12 36 36 H 1.08001 * 125.65072 * 180.02562 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2984 1.0897 0.0000 4 7 3.5913 0.6401 -0.0006 5 6 4.7996 1.4685 -0.0062 6 6 5.6958 1.0551 -1.1753 7 6 4.4086 2.9398 -0.1587 8 6 5.5449 1.2785 1.2897 9 8 5.1536 0.4661 2.1008 10 7 6.6463 2.0113 1.5474 11 6 7.3705 1.8270 2.8074 12 6 8.5536 2.7596 2.8479 13 1 8.7465 3.4235 2.0182 14 6 9.3892 2.7660 3.9446 15 7 9.1540 1.9579 4.9553 16 14 10.8553 3.9225 3.9950 17 1 10.8982 4.7222 2.7445 18 1 10.7272 4.8336 5.1606 19 1 12.1058 3.1312 4.1202 20 6 3.5449 -0.7095 -0.0015 21 7 2.2952 -1.0852 -0.0020 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 1.9750 2.1201 0.0006 26 1 5.1568 1.1926 -2.1127 27 1 6.5951 1.6712 -1.1793 28 1 5.9744 0.0070 -1.0667 29 1 3.7701 3.2343 0.6741 30 1 5.3076 3.5561 -0.1625 31 1 3.8695 3.0772 -1.0960 32 1 6.9590 2.6613 0.8989 33 1 6.7066 2.0465 3.6436 34 1 7.7173 0.7962 2.8798 35 1 9.7420 1.9622 5.7266 36 1 4.4004 -1.3687 -0.0017 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897591599.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:17 Heat of formation + Delta-G solvation = -7.635166 kcal Electronic energy + Delta-G solvation = -18479.767411 eV Core-core repulsion = 15577.874494 eV Total energy + Delta-G solvation = -2901.892917 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.25409 -40.79420 -36.90295 -36.30206 -34.44087 -32.68333 -31.63715 -29.32977 -28.88480 -27.24797 -25.47968 -24.15777 -22.51528 -20.99120 -20.86845 -19.29177 -18.11713 -17.57030 -16.88062 -16.41745 -16.22993 -15.74570 -15.28507 -14.94007 -14.81797 -14.29625 -14.16838 -14.00016 -13.69666 -13.51291 -13.45943 -13.23204 -13.15331 -12.92639 -12.84723 -12.77862 -12.40259 -12.22609 -11.48774 -11.15047 -10.90934 -10.85095 -10.38285 -9.96467 -9.21910 -8.31392 -6.48498 1.03887 1.43922 1.44254 1.50043 1.57804 1.69713 2.15942 2.27611 2.45652 3.04502 3.45548 3.60212 3.60466 3.71097 3.90890 4.38542 4.44898 4.53302 4.55079 4.60072 4.68656 4.93069 4.99293 5.01625 5.04240 5.06422 5.14634 5.17651 5.39068 5.40429 5.58953 5.79833 5.90944 6.20714 6.61018 6.73388 7.15182 7.18091 7.32674 8.80938 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.043724 B = 0.004571 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.233119 B = 6123.955238 C = 6334.567465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.033 4.033 3 C -0.054 4.054 4 N -0.435 5.435 5 C 0.148 3.852 6 C -0.150 4.150 7 C -0.151 4.151 8 C 0.490 3.510 9 O -0.590 6.590 10 N -0.690 5.690 11 C 0.267 3.733 12 C -0.553 4.553 13 H 0.090 0.910 14 C 0.004 3.996 15 N -0.932 5.932 16 Si 0.984 3.016 17 H -0.249 1.249 18 H -0.281 1.281 19 H -0.281 1.281 20 C 0.192 3.808 21 N -0.531 5.531 22 H 0.080 0.920 23 H 0.058 0.942 24 H 0.085 0.915 25 H 0.203 0.797 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.411 0.589 33 H -0.014 1.014 34 H -0.011 1.011 35 H 0.268 0.732 36 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.365 5.060 -15.740 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.161 4.161 3 C -0.186 4.186 4 N -0.118 5.118 5 C 0.059 3.941 6 C -0.208 4.208 7 C -0.209 4.209 8 C 0.274 3.726 9 O -0.471 6.471 10 N -0.340 5.340 11 C 0.144 3.856 12 C -0.591 4.591 13 H 0.107 0.893 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.808 3.192 17 H -0.172 1.172 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.091 4.091 21 N -0.251 5.251 22 H 0.098 0.902 23 H 0.077 0.923 24 H 0.104 0.896 25 H 0.220 0.780 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.123 0.877 31 H 0.128 0.872 32 H 0.248 0.752 33 H 0.004 0.996 34 H 0.007 0.993 35 H 0.077 0.923 36 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -9.707 3.735 -14.989 18.244 hybrid contribution 1.322 0.840 0.766 1.744 sum -8.385 4.576 -14.223 17.133 Atomic orbital electron populations 1.20052 0.85736 1.02957 1.02937 1.21337 0.98011 0.88537 1.08242 1.22858 0.82244 1.01584 1.11941 1.45364 1.06242 1.07004 1.53154 1.21002 0.84490 0.94903 0.93661 1.22225 0.99800 1.03162 0.95581 1.22223 1.05001 0.88728 1.04928 1.21279 0.81493 0.80964 0.88828 1.90727 1.68324 1.37732 1.50284 1.46067 1.26368 1.40030 1.21564 1.18584 0.90543 0.95516 0.80910 1.21629 1.10262 1.22240 1.04944 0.89251 1.26068 1.01470 0.97446 0.94593 1.70149 1.39767 1.39144 1.08042 0.85113 0.77271 0.77907 0.78946 1.17166 1.20723 1.20687 1.24797 0.96741 0.83020 1.04553 1.70151 1.01145 1.31953 1.21834 0.90159 0.92337 0.89575 0.78046 0.88068 0.87750 0.92170 0.91805 0.87734 0.87225 0.75161 0.99618 0.99347 0.92290 0.78589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.24 10.42 71.24 0.74 -0.50 16 2 C -0.03 -0.97 7.09 41.39 0.29 -0.68 16 3 C -0.05 -1.42 10.39 83.09 0.86 -0.56 16 4 N -0.44 -12.67 2.37 -488.72 -1.16 -13.83 16 5 C 0.15 3.74 1.07 2.85 0.00 3.74 16 6 C -0.15 -2.80 8.38 71.98 0.60 -2.20 16 7 C -0.15 -2.62 7.28 71.98 0.52 -2.09 16 8 C 0.49 18.50 6.49 87.65 0.57 19.07 16 9 O -0.59 -29.17 15.66 -3.05 -0.05 -29.22 16 10 N -0.69 -26.60 5.37 -466.79 -2.51 -29.11 16 11 C 0.27 14.02 5.43 85.63 0.46 14.49 16 12 C -0.55 -28.50 9.28 25.60 0.24 -28.26 16 13 H 0.09 4.06 7.60 -2.91 -0.02 4.03 16 14 C 0.00 0.21 5.46 84.65 0.46 0.67 16 15 N -0.93 -55.18 13.29 21.45 0.28 -54.90 16 16 Si 0.98 40.67 29.54 68.60 2.03 42.70 16 17 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 18 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 19 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 20 C 0.19 6.41 10.84 180.26 1.95 8.37 16 21 N -0.53 -18.73 11.25 -188.32 -2.12 -20.85 16 22 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.20 3.69 7.27 -2.91 -0.02 3.67 16 26 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.10 1.58 7.88 -2.39 -0.02 1.56 16 28 H 0.06 1.28 7.73 -2.39 -0.02 1.26 16 29 H 0.06 1.25 7.68 -2.39 -0.02 1.24 16 30 H 0.10 1.46 7.32 -2.39 -0.02 1.45 16 31 H 0.11 1.24 8.08 -2.39 -0.02 1.22 16 32 H 0.41 12.32 7.21 -92.71 -0.67 11.65 16 33 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 34 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 35 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.20 6.18 7.92 -2.91 -0.02 6.16 16 Total: -1.00 -76.81 306.77 3.61 -73.21 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.41 Total: 19.94 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 6.72 Total: 12.05 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -5.50 Total: -118.68 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.05 Total: -29.22 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -76.81 3.61 -73.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897591599.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.572 kcal (2) G-P(sol) polarization free energy of solvation -76.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds