Wall clock time and date at job start Sun Mar 29 2020 23:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30854 * 125.41562 * 2 1 4 4 C 1.33316 * 109.68630 * 179.97438 * 3 2 1 5 5 C 1.36668 * 107.78362 * 359.97438 * 4 3 2 6 6 C 1.46770 * 126.84309 * 179.97438 * 5 4 3 7 7 O 1.21678 * 119.99549 * 186.98411 * 6 5 4 8 8 N 1.34770 * 119.99826 * 6.98062 * 6 5 4 9 9 C 1.46499 * 120.00465 * 5.61108 * 8 6 5 10 10 C 1.46509 * 120.00023 * 185.60931 * 8 6 5 11 11 H 1.09006 * 109.46665 * 0.02562 * 10 8 6 12 12 C 1.52997 * 109.47252 * 240.00291 * 10 8 6 13 13 C 1.50694 * 109.47078 * 119.99816 * 10 8 6 14 14 H 1.07999 * 120.00396 * 0.02562 * 13 10 8 15 15 C 1.37878 * 119.99744 * 179.97438 * 13 10 8 16 16 N 1.31509 * 120.00152 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 119.99908 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.46887 * 90.00347 * 17 15 13 19 19 H 1.48498 * 109.47492 * 210.00522 * 17 15 13 20 20 H 1.48496 * 109.47385 * 330.00745 * 17 15 13 21 21 N 1.34489 * 125.41941 * 180.22079 * 2 1 3 22 22 C 1.46497 * 126.47404 * 0.06101 * 21 2 1 23 23 H 1.09005 * 109.46695 * 90.02943 * 1 2 3 24 24 H 1.09000 * 109.47154 * 210.02740 * 1 2 3 25 25 H 1.08998 * 109.47593 * 330.02851 * 1 2 3 26 26 H 1.07998 * 126.11180 * 179.97438 * 4 3 2 27 27 H 1.08998 * 109.47415 * 275.72604 * 9 8 6 28 28 H 1.09001 * 109.46802 * 35.72872 * 9 8 6 29 29 H 1.09000 * 109.47222 * 155.72215 * 9 8 6 30 30 H 1.08996 * 109.47273 * 179.97438 * 12 10 8 31 31 H 1.08993 * 109.47221 * 299.99762 * 12 10 8 32 32 H 1.09007 * 109.46959 * 60.00056 * 12 10 8 33 33 H 0.97007 * 120.00178 * 179.97438 * 16 15 13 34 34 H 1.09005 * 109.47383 * 264.47316 * 22 21 2 35 35 H 1.08999 * 109.47265 * 24.47707 * 22 21 2 36 36 H 1.09000 * 109.47378 * 144.47727 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5486 0.7050 0.0006 5 6 3.5975 -0.6608 0.0015 6 6 4.8029 -1.4982 0.0019 7 8 4.7057 -2.7044 -0.1254 8 7 6.0173 -0.9311 0.1431 9 6 6.1284 0.5034 0.4190 10 6 7.2265 -1.7492 0.0207 11 1 6.9468 -2.7827 -0.1840 12 6 8.0205 -1.6844 1.3269 13 6 8.0749 -1.2257 -1.1094 14 1 7.7465 -0.3691 -1.6793 15 6 9.2709 -1.8398 -1.4152 16 7 9.6710 -2.8826 -0.7211 17 14 10.3222 -1.1914 -2.8166 18 1 11.2655 -0.1694 -2.2958 19 1 11.0889 -2.3111 -3.4195 20 1 9.4481 -0.5779 -3.8484 21 7 2.2864 -1.0960 -0.0042 22 6 1.8312 -2.4884 -0.0108 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 -0.8897 0.5143 25 1 -0.3634 0.8902 0.5134 26 1 4.3977 1.3723 0.0003 27 1 6.0813 1.0584 -0.5180 28 1 5.3082 0.8133 1.0665 29 1 7.0783 0.7057 0.9138 30 1 8.9199 -2.2934 1.2360 31 1 8.3002 -0.6510 1.5312 32 1 7.4068 -2.0631 2.1443 33 1 10.5123 -3.3149 -0.9365 34 1 1.8114 -2.8691 1.0104 35 1 0.8296 -2.5412 -0.4377 36 1 2.5137 -3.0910 -0.6100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900568625.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:58 Heat of formation + Delta-G solvation = 20.292453 kcal Electronic energy + Delta-G solvation = -18843.591026 eV Core-core repulsion = 15942.909142 eV Total energy + Delta-G solvation = -2900.681884 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.31840 -40.42425 -37.32261 -35.33750 -34.67170 -32.98988 -31.34728 -28.63400 -28.16405 -27.45485 -27.30030 -24.13158 -22.52445 -21.05914 -20.30987 -18.56273 -17.80148 -17.64252 -17.20007 -17.00081 -16.07213 -15.87764 -15.23596 -14.81261 -14.47821 -14.31223 -14.22583 -13.99300 -13.69087 -13.52170 -13.29330 -13.13096 -12.99337 -12.74720 -12.71806 -12.29891 -12.17406 -12.13134 -11.36982 -11.21241 -10.81377 -10.70163 -10.52146 -9.57083 -9.34572 -8.15820 -6.32516 0.31146 1.42328 1.43390 1.50860 1.55162 1.79822 2.29233 2.37138 2.50700 3.12414 3.44700 3.58735 3.88492 3.98611 4.29246 4.33487 4.37210 4.58753 4.62995 4.69412 4.73462 4.75135 4.87130 4.97124 5.02281 5.05423 5.15229 5.42701 5.44856 5.59895 5.63693 5.99834 6.11992 6.12779 6.68136 6.73702 6.87283 7.21162 7.40978 8.88740 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.035395 B = 0.005600 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.871874 B = 4999.170357 C = 5176.884292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.228 3.772 3 N -0.523 5.523 4 C 0.023 3.977 5 C -0.108 4.108 6 C 0.571 3.429 7 O -0.602 6.602 8 N -0.583 5.583 9 C 0.067 3.933 10 C 0.266 3.734 11 H 0.012 0.988 12 C -0.133 4.133 13 C -0.540 4.540 14 H 0.061 0.939 15 C 0.018 3.982 16 N -0.916 5.916 17 Si 0.966 3.034 18 H -0.266 1.266 19 H -0.285 1.285 20 H -0.272 1.272 21 N -0.434 5.434 22 C 0.067 3.933 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.103 0.897 26 H 0.212 0.788 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.019 0.981 33 H 0.265 0.735 34 H 0.085 0.915 35 H 0.129 0.871 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.770 6.674 2.696 17.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.035 4.035 3 N -0.243 5.243 4 C -0.130 4.130 5 C -0.224 4.224 6 C 0.361 3.639 7 O -0.486 6.486 8 N -0.312 5.312 9 C -0.075 4.075 10 C 0.164 3.836 11 H 0.030 0.970 12 C -0.192 4.192 13 C -0.578 4.578 14 H 0.079 0.921 15 C -0.182 4.182 16 N -0.555 5.555 17 Si 0.791 3.209 18 H -0.191 1.191 19 H -0.211 1.211 20 H -0.197 1.197 21 N -0.115 5.115 22 C -0.074 4.074 23 H 0.119 0.881 24 H 0.119 0.881 25 H 0.122 0.878 26 H 0.228 0.772 27 H 0.086 0.914 28 H 0.112 0.888 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.148 0.852 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.978 6.532 2.654 17.464 hybrid contribution 1.413 -1.043 -0.695 1.889 sum -14.565 5.489 1.959 15.688 Atomic orbital electron populations 1.20516 0.80732 1.05977 1.05368 1.24435 0.97695 0.80454 1.00868 1.70181 1.02290 1.29096 1.22706 1.23930 0.96158 0.91610 1.01323 1.20735 0.85529 0.95398 1.20725 1.17277 0.83151 0.86369 0.77138 1.90682 1.87155 1.16204 1.54596 1.47895 1.05205 1.10872 1.67217 1.22419 1.04066 0.79513 1.01475 1.18631 0.80206 0.90253 0.94491 0.96958 1.21896 1.00947 1.01008 0.95316 1.21550 1.04847 1.15319 1.16127 0.92054 1.25712 0.98675 0.94889 0.98948 1.70017 1.22620 1.21658 1.41218 0.85433 0.78491 0.77963 0.78987 1.19121 1.21106 1.19721 1.45287 1.04571 1.09505 1.52104 1.22361 1.02868 0.77457 1.04723 0.88111 0.88145 0.87801 0.77185 0.91370 0.88797 0.90019 0.91036 0.93040 0.96212 0.92545 0.89682 0.85232 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 9.92 71.24 0.71 -0.19 16 2 C 0.23 5.84 7.88 138.20 1.09 6.93 16 3 N -0.52 -15.92 11.20 -187.40 -2.10 -18.02 16 4 C 0.02 0.74 9.80 84.10 0.82 1.57 16 5 C -0.11 -3.94 6.75 40.01 0.27 -3.67 16 6 C 0.57 25.74 7.64 86.47 0.66 26.41 16 7 O -0.60 -31.18 14.33 -4.28 -0.06 -31.24 16 8 N -0.58 -25.95 2.75 -831.42 -2.29 -28.23 16 9 C 0.07 2.24 7.87 127.77 1.01 3.25 16 10 C 0.27 14.03 2.62 44.24 0.12 14.15 16 11 H 0.01 0.78 6.91 -2.38 -0.02 0.76 16 12 C -0.13 -6.48 8.96 71.98 0.64 -5.83 16 13 C -0.54 -29.50 8.37 25.60 0.21 -29.28 16 14 H 0.06 3.26 7.65 -2.91 -0.02 3.24 16 15 C 0.02 0.96 5.30 84.66 0.45 1.41 16 16 N -0.92 -52.62 11.32 21.45 0.24 -52.38 16 17 Si 0.97 43.05 29.54 68.60 2.03 45.07 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 N -0.43 -12.98 3.17 -524.94 -1.67 -14.65 16 22 C 0.07 1.59 10.30 127.77 1.32 2.91 16 23 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 24 H 0.10 0.84 7.56 -2.39 -0.02 0.82 16 25 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.21 5.81 4.41 -2.91 -0.01 5.80 16 27 H 0.07 2.11 7.41 -2.39 -0.02 2.09 16 28 H 0.09 2.63 5.28 -2.39 -0.01 2.62 16 29 H 0.08 2.68 6.44 -2.39 -0.02 2.66 16 30 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16 31 H 0.05 2.25 6.67 -2.39 -0.02 2.23 16 32 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.27 14.41 8.31 -92.70 -0.77 13.64 16 34 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.13 1.78 7.38 -2.39 -0.02 1.77 16 36 H 0.07 2.26 6.68 -2.39 -0.02 2.24 16 Total: -1.00 -73.47 292.38 4.54 -68.92 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 1.09 Total: 12.89 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 7.30 Total: 17.63 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -5.81 Total: -113.28 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.06 Total: -31.24 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -73.47 4.54 -68.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900568625.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.216 kcal (2) G-P(sol) polarization free energy of solvation -73.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds