Wall clock time and date at job start Sun Mar 29 2020 23:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29946 * 125.30607 * 2 1 4 4 O 1.41876 * 107.41762 * 180.02562 * 3 2 1 5 5 N 1.41880 * 106.38544 * 359.97438 * 4 3 2 6 6 C 1.29957 * 107.41362 * 359.72117 * 5 4 3 7 7 C 1.50697 * 125.30446 * 180.24514 * 6 5 4 8 8 H 1.08997 * 109.46935 * 165.22862 * 7 6 5 9 9 C 1.52999 * 109.47123 * 285.22571 * 7 6 5 10 10 N 1.46901 * 109.47139 * 45.22691 * 7 6 5 11 11 C 1.46897 * 110.99707 * 155.00108 * 10 7 6 12 12 C 1.53008 * 109.46800 * 185.37534 * 11 10 7 13 13 C 1.50700 * 115.54714 * 39.53415 * 12 11 10 14 14 H 1.07996 * 120.00040 * 264.79792 * 13 12 11 15 15 C 1.37877 * 119.99868 * 84.80726 * 13 12 11 16 16 N 1.31508 * 120.00212 * 353.18011 * 15 13 12 17 17 Si 1.86805 * 119.99932 * 173.18353 * 15 13 12 18 18 H 1.48502 * 109.47064 * 89.99316 * 17 15 13 19 19 H 1.48494 * 109.47215 * 209.99917 * 17 15 13 20 20 H 1.48504 * 109.46874 * 329.99627 * 17 15 13 21 21 C 1.52997 * 117.50059 * 253.82548 * 12 11 10 22 22 C 1.53000 * 117.49748 * 185.19897 * 12 11 10 23 23 H 1.08992 * 109.47406 * 90.02795 * 1 2 3 24 24 H 1.08998 * 109.47222 * 210.02726 * 1 2 3 25 25 H 1.09005 * 109.47186 * 330.02427 * 1 2 3 26 26 H 1.08999 * 109.47496 * 179.97438 * 9 7 6 27 27 H 1.08995 * 109.47624 * 300.00152 * 9 7 6 28 28 H 1.08997 * 109.46977 * 60.00317 * 9 7 6 29 29 H 1.00902 * 110.99770 * 278.95624 * 10 7 6 30 30 H 1.08995 * 109.47135 * 305.37243 * 11 10 7 31 31 H 1.09002 * 109.47507 * 65.37858 * 11 10 7 32 32 H 0.97003 * 119.99930 * 180.02562 * 16 15 13 33 33 H 1.08999 * 117.49886 * 359.97438 * 21 12 11 34 34 H 1.08994 * 117.50290 * 145.02310 * 21 12 11 35 35 H 1.08997 * 117.49849 * 214.97673 * 22 12 11 36 36 H 1.08998 * 117.49927 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6247 -0.0006 5 7 3.5710 -0.7937 -0.0003 6 6 2.3212 -1.1499 0.0064 7 6 1.8209 -2.5714 0.0144 8 1 0.7640 -2.5830 0.2809 9 6 2.0030 -3.1840 -1.3757 10 7 2.5825 -3.3531 0.9977 11 6 1.8034 -4.5045 1.4721 12 6 2.5719 -5.2152 2.5881 13 6 3.2871 -4.3134 3.5609 14 1 4.3315 -4.0809 3.4140 15 6 2.6082 -3.7852 4.6385 16 7 1.3088 -3.9571 4.7454 17 14 3.5342 -2.8254 5.9465 18 1 3.5641 -1.3874 5.5771 19 1 2.8510 -2.9863 7.2551 20 1 4.9237 -3.3397 6.0470 21 6 3.2300 -6.5545 2.2508 22 6 1.9814 -6.5167 3.1344 23 1 -0.3634 -0.0005 -1.0276 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3634 0.8902 0.5135 26 1 1.6415 -4.2123 -1.3699 27 1 1.4379 -2.6040 -2.1053 28 1 3.0598 -3.1724 -1.6422 29 1 3.4688 -3.6484 0.6165 30 1 0.8426 -4.1603 1.8547 31 1 1.6388 -5.1969 0.6465 32 1 0.8312 -3.5852 5.5034 33 1 3.1152 -6.9297 1.2338 34 1 4.1806 -6.7837 2.7322 35 1 2.1108 -6.7209 4.1972 36 1 1.0454 -6.8664 2.6990 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926343044.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:22:47 Heat of formation + Delta-G solvation = 113.624360 kcal Electronic energy + Delta-G solvation = -18687.768152 eV Core-core repulsion = 15791.133443 eV Total energy + Delta-G solvation = -2896.634709 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.22132 -37.45790 -35.77927 -33.88449 -32.12957 -31.78946 -29.51496 -28.66569 -25.60875 -24.91003 -23.73633 -21.26804 -21.03236 -20.07001 -19.07897 -16.96712 -15.93214 -15.85372 -14.94517 -14.68015 -14.44901 -14.18480 -13.85539 -13.52067 -13.39238 -13.12638 -12.77929 -12.54064 -12.28502 -11.71151 -11.65996 -11.51999 -11.19409 -11.12357 -10.88898 -10.72603 -10.45586 -10.43929 -10.38893 -10.14531 -9.50447 -8.82318 -8.32110 -8.06035 -7.66096 -5.92914 -3.92319 0.81296 2.23188 2.93216 3.37992 3.40990 3.44260 3.48414 3.99453 4.51444 4.68671 4.87420 5.03543 5.15983 5.22286 5.32060 5.33089 5.36494 5.40720 5.64573 5.76634 5.84737 5.88032 6.06366 6.15667 6.23809 6.44773 6.50766 6.71470 6.85119 7.08200 7.21279 7.36261 7.45701 7.85365 8.00283 8.05753 8.54734 9.04061 9.70736 11.17533 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.018287 B = 0.007749 C = 0.006359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.804633 B = 3612.512702 C = 4402.285186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.082 3.918 3 N -0.291 5.291 4 O 0.011 5.989 5 N -0.254 5.254 6 C 0.097 3.903 7 C 0.145 3.855 8 H 0.105 0.895 9 C -0.179 4.179 10 N -0.647 5.647 11 C 0.110 3.890 12 C 0.047 3.953 13 C -0.463 4.463 14 H 0.057 0.943 15 C 0.074 3.926 16 N -0.885 5.885 17 Si 0.883 3.117 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.275 1.275 21 C -0.218 4.218 22 C -0.157 4.157 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.342 0.658 30 H 0.073 0.927 31 H 0.000 1.000 32 H 0.255 0.745 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.496 2.299 -11.241 12.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 N -0.037 5.037 4 O -0.128 6.128 5 N 0.001 4.999 6 C -0.087 4.087 7 C 0.033 3.967 8 H 0.123 0.877 9 C -0.239 4.239 10 N -0.277 5.277 11 C -0.018 4.018 12 C 0.046 3.954 13 C -0.501 4.501 14 H 0.075 0.925 15 C -0.128 4.128 16 N -0.522 5.522 17 Si 0.712 3.288 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.201 1.201 21 C -0.255 4.255 22 C -0.195 4.195 23 H 0.111 0.889 24 H 0.115 0.885 25 H 0.106 0.894 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.161 0.839 30 H 0.091 0.909 31 H 0.018 0.982 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.618 3.594 -10.568 11.734 hybrid contribution -0.095 -0.410 0.144 0.445 sum -3.713 3.184 -10.423 11.514 Atomic orbital electron populations 1.20570 0.84603 1.05530 1.04310 1.24535 1.00155 0.89154 0.96186 1.79806 0.89567 1.19954 1.14333 1.93355 1.19836 1.14735 1.84826 1.79947 1.17704 0.89928 1.12276 1.24635 0.89585 0.98877 0.95614 1.20209 0.99061 0.85276 0.92186 0.87674 1.22540 1.02833 1.01768 0.96715 1.60184 1.05674 1.25841 1.36045 1.21550 0.97133 0.88854 0.94260 1.18860 0.96446 0.85558 0.94507 1.20155 0.95741 1.27626 1.06553 0.92533 1.24824 0.94626 0.95632 0.97724 1.69988 1.06588 1.45635 1.30037 0.86741 0.80128 0.80608 0.81350 1.20875 1.21522 1.20052 1.23095 0.97246 1.07036 0.98126 1.22492 0.93764 1.05091 0.98118 0.88889 0.88470 0.89377 0.90995 0.92140 0.91861 0.83890 0.90855 0.98194 0.93502 0.92046 0.90529 0.90067 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 10.18 36.01 0.37 -0.51 16 2 C 0.08 1.19 7.19 -82.38 -0.59 0.60 16 3 N -0.29 -4.87 12.98 33.74 0.44 -4.43 16 4 O 0.01 0.22 13.71 12.02 0.16 0.38 16 5 N -0.25 -4.69 12.96 33.74 0.44 -4.26 16 6 C 0.10 1.56 6.04 -82.38 -0.50 1.06 16 7 C 0.15 2.13 2.98 -68.87 -0.21 1.92 16 8 H 0.11 1.39 6.37 -51.93 -0.33 1.06 16 9 C -0.18 -2.08 9.15 37.16 0.34 -1.74 16 10 N -0.65 -12.15 5.50 -107.95 -0.59 -12.74 16 11 C 0.11 2.21 5.59 -3.82 -0.02 2.19 16 12 C 0.05 1.09 1.73 -155.66 -0.27 0.82 16 13 C -0.46 -12.31 8.15 -34.44 -0.28 -12.59 16 14 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 15 C 0.07 2.01 5.39 -17.82 -0.10 1.91 16 16 N -0.88 -24.54 12.96 55.43 0.72 -23.82 16 17 Si 0.88 21.83 29.54 -169.99 -5.02 16.81 16 18 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C -0.22 -4.53 9.88 -26.73 -0.26 -4.79 16 22 C -0.16 -3.51 9.49 -26.73 -0.25 -3.77 16 23 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.10 0.86 6.98 -51.93 -0.36 0.50 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.80 7.56 -51.93 -0.39 0.40 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 29 H 0.34 6.36 8.53 -39.29 -0.34 6.03 16 30 H 0.07 1.59 7.92 -51.93 -0.41 1.18 16 31 H 0.00 0.00 7.37 -51.93 -0.38 -0.38 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 34 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 310.66 15.07 4.68 4.68 Total: -1.00 -30.13 310.66 -6.09 -36.22 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -5.14 Total: 2.07 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -1.77 Total: -14.90 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 1.00 Total: -45.26 kcal Atomic # 8 Polarization: 0.22 SS G_CDS: 0.16 Total: 0.38 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.13 -6.09 -36.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926343044.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.843 kcal (2) G-P(sol) polarization free energy of solvation -30.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds