Wall clock time and date at job start Sun Mar 29 2020 22:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00318 * 2 1 4 4 H 1.48503 * 109.47250 * 269.99403 * 3 2 1 5 5 H 1.48499 * 109.47267 * 29.99565 * 3 2 1 6 6 H 1.48505 * 109.47285 * 149.99608 * 3 2 1 7 7 C 1.37881 * 119.99560 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99939 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00021 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47066 * 299.99587 * 9 7 2 11 11 O 1.42895 * 109.47590 * 59.99442 * 9 7 2 12 12 C 1.53006 * 109.47239 * 179.97438 * 9 7 2 13 13 N 1.46899 * 109.47163 * 179.97438 * 12 9 7 14 14 C 1.48534 * 110.99907 * 52.60620 * 13 12 9 15 15 C 1.54934 * 103.22686 * 159.72327 * 14 13 12 16 16 C 1.54593 * 102.92042 * 322.57901 * 15 14 13 17 17 H 1.09003 * 110.30907 * 263.04473 * 16 15 14 18 18 N 1.46498 * 110.39323 * 140.91963 * 16 15 14 19 19 C 1.34946 * 126.03828 * 328.95487 * 18 16 15 20 20 C 1.35317 * 107.75056 * 179.83970 * 19 18 16 21 21 C 1.39880 * 107.91535 * 0.42005 * 20 19 18 22 22 N 1.30834 * 108.20313 * 359.73992 * 21 20 19 23 23 C 1.47900 * 111.00091 * 169.99632 * 13 12 9 24 24 H 0.97002 * 119.99397 * 0.02562 * 1 2 3 25 25 H 0.96705 * 114.00010 * 59.99939 * 11 9 7 26 26 H 1.09001 * 109.46998 * 299.99373 * 12 9 7 27 27 H 1.09000 * 109.47050 * 59.99664 * 12 9 7 28 28 H 1.09005 * 110.66392 * 278.15077 * 14 13 12 29 29 H 1.08999 * 110.67309 * 41.27875 * 14 13 12 30 30 H 1.09008 * 110.72350 * 204.22860 * 15 14 13 31 31 H 1.08991 * 110.88388 * 81.00978 * 15 14 13 32 32 H 1.07999 * 126.12433 * 359.97438 * 19 18 16 33 33 H 1.07994 * 126.04470 * 180.15885 * 20 19 18 34 34 H 1.07997 * 125.89323 * 179.71568 * 21 20 19 35 35 H 1.09005 * 109.91414 * 333.51353 * 23 13 12 36 36 H 1.08999 * 109.91575 * 94.59973 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6239 -2.5567 0.8903 11 8 0.4296 -2.5751 -1.1664 12 6 2.2450 -3.6622 0.0005 13 7 1.5104 -4.9343 0.0012 14 6 0.5146 -4.9745 -1.1002 15 6 0.2427 -6.4895 -1.2772 16 6 1.6359 -7.1196 -1.0495 17 1 2.1274 -7.3061 -2.0044 18 7 1.5143 -8.3659 -0.2891 19 6 0.5726 -8.6422 0.6370 20 6 0.8047 -9.8919 1.1013 21 6 1.9326 -10.3929 0.4429 22 7 2.3588 -9.4790 -0.3907 23 6 2.4228 -6.0734 -0.2387 24 1 -0.4849 0.8401 -0.0004 25 1 0.9220 -2.5300 -1.9975 26 1 2.8716 -3.6046 -0.8895 27 1 2.8717 -3.6045 0.8905 28 1 -0.3975 -4.4509 -0.8134 29 1 0.9327 -4.5493 -2.0127 30 1 -0.1167 -6.7018 -2.2842 31 1 -0.4684 -6.8462 -0.5323 32 1 -0.2250 -7.9847 0.9499 33 1 0.2245 -10.4092 1.8509 34 1 2.3754 -11.3659 0.5967 35 1 3.2915 -5.7401 -0.8065 36 1 2.7424 -6.4997 0.7122 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930530908.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:18 Heat of formation + Delta-G solvation = 21.970613 kcal Electronic energy + Delta-G solvation = -18534.106055 eV Core-core repulsion = 15633.496942 eV Total energy + Delta-G solvation = -2900.609114 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.16920 -40.09583 -37.47929 -34.40582 -34.08508 -31.65931 -31.01791 -29.76132 -28.79310 -26.28079 -23.36565 -23.16481 -22.17091 -21.48933 -20.69843 -19.07425 -18.40190 -16.97713 -16.70014 -16.45176 -16.03932 -15.71637 -15.45470 -15.31630 -14.71518 -14.51934 -13.99368 -13.63097 -13.48815 -13.45226 -13.06490 -12.84730 -12.78251 -12.72040 -12.56005 -12.11311 -11.95799 -11.78694 -11.56113 -11.02626 -10.72286 -10.37902 -9.96312 -9.48601 -9.35308 -8.14414 -6.39791 1.00418 1.40036 1.41540 1.51605 1.56070 2.00153 2.37908 3.05507 3.11921 3.39221 3.51844 3.92280 3.99595 4.07634 4.16834 4.27709 4.30545 4.43867 4.52511 4.58383 4.71851 4.79353 4.87463 4.92085 5.01632 5.09649 5.20373 5.30014 5.62580 5.68579 5.81926 5.94190 6.01535 6.15073 6.17651 6.71908 6.82511 7.32252 7.51723 8.89637 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.057368 B = 0.004305 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.956539 B = 6503.115352 C = 6648.468558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.030 3.970 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.589 4.589 8 H 0.057 0.943 9 C 0.237 3.763 10 H 0.023 0.977 11 O -0.566 6.566 12 C 0.040 3.960 13 N -0.525 5.525 14 C 0.061 3.939 15 C -0.128 4.128 16 C 0.157 3.843 17 H 0.112 0.888 18 N -0.369 5.369 19 C 0.053 3.947 20 C -0.284 4.284 21 C 0.039 3.961 22 N -0.341 5.341 23 C 0.031 3.969 24 H 0.261 0.739 25 H 0.352 0.648 26 H 0.034 0.966 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.186 0.814 33 H 0.169 0.831 34 H 0.209 0.791 35 H 0.057 0.943 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.490 -16.223 -1.729 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.173 4.173 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.627 4.627 8 H 0.075 0.925 9 C 0.180 3.820 10 H 0.041 0.959 11 O -0.370 6.370 12 C -0.089 4.089 13 N -0.249 5.249 14 C -0.067 4.067 15 C -0.167 4.167 16 C 0.054 3.946 17 H 0.130 0.870 18 N -0.151 5.151 19 C -0.093 4.093 20 C -0.313 4.313 21 C -0.146 4.146 22 N -0.162 5.162 23 C -0.098 4.098 24 H 0.070 0.930 25 H 0.197 0.803 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.203 0.797 33 H 0.186 0.814 34 H 0.226 0.774 35 H 0.075 0.925 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.507 -15.780 -1.711 15.944 hybrid contribution 0.703 1.123 -0.257 1.350 sum 2.210 -14.657 -1.968 14.953 Atomic orbital electron populations 1.70199 1.07500 1.27352 1.48199 1.25827 0.95458 1.02679 0.93343 0.85594 0.78700 0.79059 0.78419 1.19780 1.20950 1.19185 1.21994 0.93468 0.92765 1.54486 0.92494 1.19090 0.87836 0.89942 0.85164 0.95899 1.86610 1.38917 1.95797 1.15654 1.22837 0.96372 0.89735 0.99916 1.64805 1.13660 1.02099 1.44386 1.23193 0.96959 0.93904 0.92637 1.23075 0.94404 0.94953 1.04220 1.22143 0.98687 0.79457 0.94269 0.86985 1.48873 1.22138 1.12557 1.31581 1.22923 0.95581 0.98353 0.92415 1.21843 1.03528 0.96474 1.09479 1.24429 0.96046 0.99720 0.94408 1.77285 1.17618 0.95559 1.25722 1.23242 0.95206 0.91728 0.99601 0.92965 0.80318 0.94825 0.91797 0.89897 0.93107 0.87979 0.89399 0.79748 0.81362 0.77407 0.92496 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.26 12.84 21.45 0.28 -51.99 16 2 C 0.03 1.63 5.40 84.66 0.46 2.09 16 3 Si 0.96 42.57 29.54 68.60 2.03 44.60 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.59 -31.56 8.76 25.60 0.22 -31.34 16 8 H 0.06 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.24 11.68 2.91 29.85 0.09 11.77 16 10 H 0.02 1.32 8.14 -2.39 -0.02 1.30 16 11 O -0.57 -26.72 8.99 -148.98 -1.34 -28.06 16 12 C 0.04 1.58 4.82 86.31 0.42 2.00 16 13 N -0.52 -18.03 5.40 -883.01 -4.76 -22.80 16 14 C 0.06 1.89 4.65 86.65 0.40 2.29 16 15 C -0.13 -3.01 6.61 31.80 0.21 -2.80 16 16 C 0.16 3.94 4.10 45.87 0.19 4.13 16 17 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 18 N -0.37 -9.67 3.48 -323.33 -1.13 -10.79 16 19 C 0.05 1.24 10.45 83.54 0.87 2.11 16 20 C -0.28 -5.85 10.80 21.99 0.24 -5.61 16 21 C 0.04 0.85 12.03 85.24 1.03 1.88 16 22 N -0.34 -9.38 12.58 -57.02 -0.72 -10.09 16 23 C 0.03 0.91 6.49 86.45 0.56 1.47 16 24 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 25 H 0.35 14.77 8.33 -74.05 -0.62 14.16 16 26 H 0.03 1.28 7.81 -2.39 -0.02 1.26 16 27 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.08 3.06 6.84 -2.38 -0.02 3.05 16 29 H 0.05 1.56 6.81 -2.39 -0.02 1.54 16 30 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.09 1.99 5.95 -2.39 -0.01 1.98 16 32 H 0.19 3.68 6.87 -2.91 -0.02 3.66 16 33 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.21 2.93 8.06 -2.91 -0.02 2.90 16 35 H 0.06 1.61 7.57 -2.38 -0.02 1.59 16 36 H 0.07 2.15 7.93 -2.39 -0.02 2.13 16 Total: -1.00 -64.42 294.01 -0.50 -64.92 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.46 Total: 26.23 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 4.68 Total: -12.01 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -6.33 Total: -95.67 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -1.34 Total: -28.06 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -64.42 -0.50 -64.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930530908.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.887 kcal (2) G-P(sol) polarization free energy of solvation -64.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds