Wall clock time and date at job start Sun Mar 29 2020 23:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.31126 * 126.55526 * 2 1 4 4 C 1.34492 * 105.61910 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.28978 * 180.02562 * 4 3 2 6 6 H 1.09001 * 110.64358 * 359.30405 * 5 4 3 7 7 C 1.54595 * 110.72650 * 236.14679 * 5 4 3 8 8 C 1.53990 * 105.14434 * 219.68228 * 7 5 4 9 9 N 1.47903 * 107.05555 * 358.77906 * 8 7 5 10 10 C 1.46899 * 110.99794 * 145.84317 * 9 8 7 11 11 C 1.52990 * 109.47342 * 69.87355 * 10 9 8 12 12 C 1.50703 * 109.47148 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99903 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00084 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00103 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99759 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47202 * 90.00101 * 16 14 12 18 18 H 1.48501 * 109.46964 * 209.99691 * 16 14 12 19 19 H 1.48490 * 109.47330 * 329.99991 * 16 14 12 20 20 C 1.48737 * 105.94625 * 25.19825 * 9 8 7 21 21 N 1.29948 * 107.42516 * 0.02562 * 4 3 2 22 22 O 1.21303 * 110.24669 * 359.97438 * 21 4 3 23 23 H 1.09003 * 109.47605 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47436 * 299.98220 * 1 2 3 25 25 H 1.09004 * 109.47196 * 59.97787 * 1 2 3 26 26 H 1.09000 * 110.30825 * 338.60397 * 7 5 4 27 27 H 1.09012 * 110.30491 * 100.76874 * 7 5 4 28 28 H 1.08999 * 109.91445 * 118.12892 * 8 7 5 29 29 H 1.08997 * 109.92127 * 239.22964 * 8 7 5 30 30 H 1.09006 * 109.47118 * 189.87740 * 10 9 8 31 31 H 1.09006 * 109.47311 * 309.86785 * 10 9 8 32 32 H 1.08998 * 109.47299 * 299.99601 * 11 10 9 33 33 H 1.08999 * 109.47343 * 60.00150 * 11 10 9 34 34 H 0.96998 * 119.99817 * 180.02562 * 15 14 12 35 35 H 1.08990 * 110.84049 * 202.57528 * 20 9 8 36 36 H 1.08999 * 110.58075 * 79.38423 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2879 1.0533 0.0000 4 6 3.5440 0.5727 -0.0006 5 6 4.8111 1.3885 -0.0003 6 1 4.5821 2.4541 -0.0119 7 6 5.7070 1.0083 -1.2015 8 6 7.1444 1.0148 -0.6493 9 7 7.0606 1.4076 0.7741 10 6 8.0852 0.7200 1.5712 11 6 9.4665 1.2693 1.2095 12 6 10.5176 0.5634 2.0267 13 1 10.2292 -0.2004 2.7338 14 6 11.8475 0.8925 1.8718 15 7 12.7648 0.2769 2.5854 16 14 12.3464 2.2130 0.6483 17 1 12.3543 3.5357 1.3233 18 1 13.7043 1.9160 0.1257 19 1 11.3774 2.2372 -0.4766 20 6 5.6933 1.0307 1.2222 21 7 3.4644 -0.7243 -0.0015 22 8 2.3028 -1.0736 -0.0009 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5136 0.8902 25 1 -0.3634 0.5142 -0.8898 26 1 5.4469 0.0152 -1.5679 27 1 5.6044 1.7453 -1.9981 28 1 7.5795 0.0190 -0.7347 29 1 7.7508 1.7333 -1.2007 30 1 7.8938 0.8872 2.6312 31 1 8.0526 -0.3490 1.3605 32 1 9.6579 1.1019 0.1496 33 1 9.4990 2.3382 1.4202 34 1 13.7004 0.5087 2.4766 35 1 5.3967 1.6132 2.0943 36 1 5.6406 -0.0370 1.4353 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931936770.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:22 Heat of formation + Delta-G solvation = 66.565211 kcal Electronic energy + Delta-G solvation = -18004.162419 eV Core-core repulsion = 15105.487072 eV Total energy + Delta-G solvation = -2898.675347 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.76857 -38.95346 -36.10339 -34.34133 -33.23223 -31.84359 -29.34840 -29.15597 -28.72878 -24.88460 -23.85138 -22.87331 -21.46156 -20.38022 -19.53654 -18.28413 -17.72761 -16.83269 -15.88651 -15.43109 -14.89820 -14.22381 -13.94316 -13.85158 -13.70292 -13.49515 -13.08196 -12.63979 -12.54252 -12.40355 -12.26746 -11.89313 -11.30935 -11.26470 -11.25364 -11.17130 -10.89426 -10.61894 -10.08053 -10.01032 -9.72978 -9.68105 -9.19787 -8.51481 -8.01614 -6.02651 -4.00911 0.96512 2.03588 2.62037 3.34526 3.35112 3.41131 3.46328 3.85889 4.40270 4.48080 4.63946 4.72873 4.76322 4.86294 4.87163 5.08179 5.29201 5.32068 5.39710 5.51824 5.57101 5.76818 5.82456 5.83608 5.98301 6.04004 6.13423 6.29536 6.32512 6.76129 7.11678 7.18479 7.47248 7.58282 7.85110 8.02453 8.54657 9.01309 9.59777 11.10755 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.058072 B = 0.003840 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.041111 B = 7289.279225 C = 7501.461201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.170 3.830 3 N -0.482 5.482 4 C 0.187 3.813 5 C -0.006 4.006 6 H 0.113 0.887 7 C -0.119 4.119 8 C 0.040 3.960 9 N -0.517 5.517 10 C 0.062 3.938 11 C -0.005 4.005 12 C -0.522 4.522 13 H 0.070 0.930 14 C 0.067 3.933 15 N -0.904 5.904 16 Si 0.882 3.118 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.265 1.265 20 C 0.047 3.953 21 N -0.378 5.378 22 O 0.076 5.924 23 H 0.096 0.904 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.030 0.970 32 H 0.015 0.985 33 H 0.021 0.979 34 H 0.263 0.737 35 H 0.085 0.915 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.119 0.553 -7.566 26.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.051 4.051 3 N -0.216 5.216 4 C -0.086 4.086 5 C -0.026 4.026 6 H 0.132 0.868 7 C -0.159 4.159 8 C -0.089 4.089 9 N -0.241 5.241 10 C -0.065 4.065 11 C -0.043 4.043 12 C -0.560 4.560 13 H 0.088 0.912 14 C -0.134 4.134 15 N -0.543 5.543 16 Si 0.710 3.290 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.189 1.189 20 C -0.082 4.082 21 N -0.085 5.085 22 O 0.017 5.983 23 H 0.114 0.886 24 H 0.121 0.879 25 H 0.120 0.880 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.033 0.967 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -24.021 0.996 -7.462 25.173 hybrid contribution 0.142 -0.315 -0.612 0.703 sum -23.880 0.680 -8.074 25.217 Atomic orbital electron populations 1.20363 0.80315 1.05515 1.05597 1.28848 0.98942 0.80982 0.96294 1.71885 1.00339 1.28953 1.20425 1.25712 0.94847 0.88125 0.99906 1.20529 0.85982 0.98568 0.97570 0.86840 1.22519 0.94665 1.01986 0.96694 1.22836 0.95161 1.00558 0.90304 1.64874 1.01649 1.55403 1.02216 1.22322 0.92231 0.95075 0.96851 1.19521 0.91105 0.96843 0.96835 1.21091 0.90439 1.21687 1.22815 0.91154 1.25001 0.96517 0.96197 0.95691 1.69919 1.01011 1.42427 1.40986 0.86734 0.77654 0.82347 0.82305 1.20205 1.21511 1.18941 1.23249 0.89313 0.99542 0.96137 1.74645 0.96986 1.15807 1.21095 1.85319 1.11528 1.35772 1.65677 0.88562 0.87908 0.87962 0.91274 0.90402 0.93111 0.89953 0.91351 0.95136 0.96652 0.96068 0.92735 0.89657 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.22 10.51 36.00 0.38 0.16 16 2 C 0.17 1.60 8.51 -13.06 -0.11 1.49 16 3 N -0.48 -5.97 11.55 -9.87 -0.11 -6.09 16 4 C 0.19 2.56 6.77 -156.37 -1.06 1.50 16 5 C -0.01 -0.08 3.58 -89.91 -0.32 -0.40 16 6 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 7 C -0.12 -1.60 6.50 -25.38 -0.16 -1.77 16 8 C 0.04 0.64 5.79 -2.76 -0.02 0.63 16 9 N -0.52 -9.28 5.26 -230.28 -1.21 -10.49 16 10 C 0.06 1.31 4.70 -3.83 -0.02 1.29 16 11 C -0.01 -0.13 4.10 -27.89 -0.11 -0.24 16 12 C -0.52 -15.22 9.66 -34.44 -0.33 -15.56 16 13 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -28.37 13.96 55.43 0.77 -27.60 16 16 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 20 C 0.05 0.72 6.00 -1.78 -0.01 0.71 16 21 N -0.38 -5.36 11.83 30.90 0.37 -4.99 16 22 O 0.08 0.88 11.31 18.10 0.20 1.09 16 23 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 24 H 0.10 0.27 8.14 -51.92 -0.42 -0.16 16 25 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.07 0.94 7.67 -51.93 -0.40 0.54 16 27 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 28 H 0.05 0.87 7.57 -51.93 -0.39 0.48 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.44 8.11 -51.93 -0.42 1.02 16 31 H 0.03 0.65 7.82 -51.93 -0.41 0.25 16 32 H 0.02 0.38 6.57 -51.93 -0.34 0.04 16 33 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 34 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 35 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.05 0.79 7.83 -51.93 -0.41 0.39 16 LS Contribution 300.16 15.07 4.52 4.52 Total: -1.00 -33.65 300.16 -7.30 -40.95 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -5.30 Total: -4.68 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -1.87 Total: -10.28 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.19 Total: -49.16 kcal Atomic # 8 Polarization: 0.88 SS G_CDS: 0.20 Total: 1.09 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.65 -7.30 -40.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931936770.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.513 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds