Wall clock time and date at job start Sun Mar 29 2020 23:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.31126 * 126.55526 * 2 1 4 4 C 1.34492 * 105.61910 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.28978 * 180.02562 * 4 3 2 6 6 H 1.09001 * 110.64358 * 359.30405 * 5 4 3 7 7 C 1.54595 * 110.72650 * 236.14679 * 5 4 3 8 8 C 1.53990 * 105.14434 * 219.68228 * 7 5 4 9 9 N 1.47903 * 107.05555 * 358.77906 * 8 7 5 10 10 C 1.46899 * 110.99794 * 145.84317 * 9 8 7 11 11 C 1.52990 * 109.47342 * 69.87355 * 10 9 8 12 12 C 1.50703 * 109.47148 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99903 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00084 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00103 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99759 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47202 * 90.00101 * 16 14 12 18 18 H 1.48501 * 109.46964 * 209.99691 * 16 14 12 19 19 H 1.48490 * 109.47330 * 329.99991 * 16 14 12 20 20 C 1.48737 * 105.94625 * 25.19825 * 9 8 7 21 21 N 1.29948 * 107.42516 * 0.02562 * 4 3 2 22 22 O 1.21303 * 110.24669 * 359.97438 * 21 4 3 23 23 H 1.09003 * 109.47605 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47436 * 299.98220 * 1 2 3 25 25 H 1.09004 * 109.47196 * 59.97787 * 1 2 3 26 26 H 1.09000 * 110.30825 * 338.60397 * 7 5 4 27 27 H 1.09012 * 110.30491 * 100.76874 * 7 5 4 28 28 H 1.08999 * 109.91445 * 118.12892 * 8 7 5 29 29 H 1.08997 * 109.92127 * 239.22964 * 8 7 5 30 30 H 1.09006 * 109.47118 * 189.87740 * 10 9 8 31 31 H 1.09006 * 109.47311 * 309.86785 * 10 9 8 32 32 H 1.08998 * 109.47299 * 299.99601 * 11 10 9 33 33 H 1.08999 * 109.47343 * 60.00150 * 11 10 9 34 34 H 0.96998 * 119.99817 * 180.02562 * 15 14 12 35 35 H 1.08990 * 110.84049 * 202.57528 * 20 9 8 36 36 H 1.08999 * 110.58075 * 79.38423 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2879 1.0533 0.0000 4 6 3.5440 0.5727 -0.0006 5 6 4.8111 1.3885 -0.0003 6 1 4.5821 2.4541 -0.0119 7 6 5.7070 1.0083 -1.2015 8 6 7.1444 1.0148 -0.6493 9 7 7.0606 1.4076 0.7741 10 6 8.0852 0.7200 1.5712 11 6 9.4665 1.2693 1.2095 12 6 10.5176 0.5634 2.0267 13 1 10.2292 -0.2004 2.7338 14 6 11.8475 0.8925 1.8718 15 7 12.7648 0.2769 2.5854 16 14 12.3464 2.2130 0.6483 17 1 12.3543 3.5357 1.3233 18 1 13.7043 1.9160 0.1257 19 1 11.3774 2.2372 -0.4766 20 6 5.6933 1.0307 1.2222 21 7 3.4644 -0.7243 -0.0015 22 8 2.3028 -1.0736 -0.0009 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5136 0.8902 25 1 -0.3634 0.5142 -0.8898 26 1 5.4469 0.0152 -1.5679 27 1 5.6044 1.7453 -1.9981 28 1 7.5795 0.0190 -0.7347 29 1 7.7508 1.7333 -1.2007 30 1 7.8938 0.8872 2.6312 31 1 8.0526 -0.3490 1.3605 32 1 9.6579 1.1019 0.1496 33 1 9.4990 2.3382 1.4202 34 1 13.7004 0.5087 2.4766 35 1 5.3967 1.6132 2.0943 36 1 5.6406 -0.0370 1.4353 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931936770.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:21 Heat of formation + Delta-G solvation = 40.974311 kcal Electronic energy + Delta-G solvation = -18005.272123 eV Core-core repulsion = 15105.487072 eV Total energy + Delta-G solvation = -2899.785052 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -46.67567 -40.24176 -37.09495 -35.75789 -34.70670 -33.46393 -30.92688 -30.21554 -29.60246 -26.61454 -24.94987 -23.85789 -23.13445 -21.68502 -20.86035 -19.19905 -19.05281 -18.63591 -17.09205 -16.72422 -16.36045 -15.61391 -15.43005 -15.06197 -14.71227 -14.37622 -14.23593 -14.17075 -13.80299 -13.61287 -13.35759 -13.12623 -12.97725 -12.70127 -12.45680 -12.20793 -12.14171 -11.94244 -11.78720 -11.72744 -11.58025 -11.40262 -10.83919 -10.78001 -9.48758 -8.31916 -6.36954 0.15572 1.11789 1.36446 1.37771 1.50738 1.94762 2.35559 2.43511 2.98369 3.03604 3.11373 3.51320 3.61044 3.83167 4.10099 4.18306 4.30078 4.37412 4.45168 4.57828 4.58598 4.63258 4.66215 4.72098 4.86281 4.88776 4.94479 5.03044 5.07971 5.15778 5.22682 5.40675 5.58329 5.86882 5.98798 6.25234 6.70286 7.16788 7.27990 8.84925 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.058072 B = 0.003840 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.041111 B = 7289.279225 C = 7501.461201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.186 3.814 3 N -0.507 5.507 4 C 0.177 3.823 5 C 0.002 3.998 6 H 0.125 0.875 7 C -0.108 4.108 8 C 0.035 3.965 9 N -0.520 5.520 10 C 0.074 3.926 11 C 0.004 3.996 12 C -0.537 4.537 13 H 0.030 0.970 14 C 0.006 3.994 15 N -0.951 5.951 16 Si 0.955 3.045 17 H -0.265 1.265 18 H -0.283 1.283 19 H -0.247 1.247 20 C 0.049 3.951 21 N -0.407 5.407 22 O 0.072 5.928 23 H 0.120 0.880 24 H 0.119 0.881 25 H 0.121 0.879 26 H 0.065 0.935 27 H 0.102 0.898 28 H 0.036 0.964 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.018 0.982 32 H 0.020 0.980 33 H 0.024 0.976 34 H 0.268 0.732 35 H 0.093 0.907 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.312 2.056 -9.301 28.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.033 4.033 3 N -0.241 5.241 4 C -0.096 4.096 5 C -0.019 4.019 6 H 0.143 0.857 7 C -0.147 4.147 8 C -0.093 4.093 9 N -0.244 5.244 10 C -0.054 4.054 11 C -0.034 4.034 12 C -0.575 4.575 13 H 0.048 0.952 14 C -0.191 4.191 15 N -0.591 5.591 16 Si 0.778 3.222 17 H -0.190 1.190 18 H -0.208 1.208 19 H -0.170 1.170 20 C -0.080 4.080 21 N -0.116 5.116 22 O 0.014 5.986 23 H 0.139 0.861 24 H 0.137 0.863 25 H 0.139 0.861 26 H 0.084 0.916 27 H 0.121 0.879 28 H 0.054 0.946 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -26.256 2.500 -9.199 27.933 hybrid contribution 0.703 -0.876 0.003 1.123 sum -25.553 1.624 -9.196 27.206 Atomic orbital electron populations 1.20778 0.76172 1.07706 1.07070 1.29960 1.00602 0.79617 0.93154 1.71887 1.00084 1.30018 1.22120 1.25688 0.95367 0.88126 1.00432 1.20430 0.85878 0.99230 0.96319 0.85664 1.22442 0.92506 1.02640 0.97139 1.22908 0.97193 0.99792 0.89374 1.64799 1.02000 1.54769 1.02860 1.22006 0.91791 0.94420 0.97134 1.19373 0.91660 0.96346 0.96037 1.21412 0.92128 1.21231 1.22723 0.95175 1.26010 0.96380 0.98850 0.97869 1.70068 1.01639 1.44431 1.43005 0.85589 0.77715 0.79009 0.79919 1.19023 1.20829 1.17005 1.23243 0.88329 0.98885 0.97553 1.74634 0.98414 1.16266 1.22311 1.85279 1.11125 1.36369 1.65835 0.86098 0.86313 0.86122 0.91637 0.87930 0.94593 0.89436 0.91901 0.96360 0.96202 0.95779 0.92361 0.88867 0.94656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.23 10.51 71.23 0.75 0.52 16 2 C 0.19 3.11 8.51 88.38 0.75 3.86 16 3 N -0.51 -11.66 11.55 -303.21 -3.50 -15.17 16 4 C 0.18 4.64 6.77 138.46 0.94 5.57 16 5 C 0.00 0.05 3.58 -10.33 -0.04 0.01 16 6 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 7 C -0.11 -2.72 6.50 31.47 0.20 -2.51 16 8 C 0.04 1.10 5.79 86.44 0.50 1.61 16 9 N -0.52 -18.29 5.26 -882.48 -4.64 -22.94 16 10 C 0.07 3.18 4.70 86.30 0.41 3.58 16 11 C 0.00 0.18 4.10 29.85 0.12 0.30 16 12 C -0.54 -32.12 9.66 25.60 0.25 -31.87 16 13 H 0.03 1.98 7.99 -2.91 -0.02 1.95 16 14 C 0.01 0.35 5.47 84.65 0.46 0.81 16 15 N -0.95 -60.99 13.96 21.45 0.30 -60.69 16 16 Si 0.95 45.46 27.47 68.60 1.88 47.34 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 20 C 0.05 1.48 6.00 86.61 0.52 2.00 16 21 N -0.41 -11.27 11.83 -60.31 -0.71 -11.98 16 22 O 0.07 1.59 11.31 74.83 0.85 2.44 16 23 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 24 H 0.12 0.18 8.14 -2.38 -0.02 0.16 16 25 H 0.12 0.12 8.14 -2.38 -0.02 0.10 16 26 H 0.06 1.71 7.67 -2.39 -0.02 1.69 16 27 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.04 1.23 7.57 -2.39 -0.02 1.21 16 29 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.06 2.71 8.11 -2.38 -0.02 2.69 16 31 H 0.02 0.81 7.82 -2.38 -0.02 0.79 16 32 H 0.02 0.95 6.57 -2.39 -0.02 0.94 16 33 H 0.02 1.17 7.57 -2.39 -0.02 1.15 16 34 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 35 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.04 1.17 7.83 -2.39 -0.02 1.15 16 Total: -1.00 -74.14 300.16 0.05 -74.10 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: 1.01 Total: 3.01 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 4.86 Total: -16.11 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -8.56 Total: -110.78 kcal Atomic # 8 Polarization: 1.59 SS G_CDS: 0.85 Total: 2.44 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Total: -74.14 0.05 -74.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931936770.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.074 kcal (2) G-P(sol) polarization free energy of solvation -74.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds