Wall clock time and date at job start Sun Mar 29 2020 23:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.27643 * 125.77382 * 2 1 4 4 O 1.41375 * 113.17551 * 180.30031 * 3 2 1 5 5 C 1.44251 * 107.50523 * 342.62679 * 4 3 2 6 6 H 1.09004 * 111.01173 * 143.21367 * 5 4 3 7 7 C 1.52999 * 111.01178 * 267.04128 * 5 4 3 8 8 N 1.46898 * 109.47257 * 298.54869 * 7 5 4 9 9 C 1.46901 * 111.00004 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.47062 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47114 * 305.00018 * 10 9 8 12 12 C 1.47199 * 109.47168 * 65.00318 * 10 9 8 13 13 N 6.88275 * 136.61193 * 48.51794 * 2 1 3 14 14 C 1.52998 * 109.47071 * 185.00307 * 10 9 8 15 15 C 1.50706 * 109.47348 * 174.99997 * 14 10 9 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 10 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 10 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 300.00068 * 19 17 15 22 22 H 1.48504 * 109.47102 * 60.00417 * 19 17 15 23 23 C 1.51692 * 125.76488 * 179.97438 * 2 1 3 24 24 H 1.09007 * 109.46802 * 0.02870 * 1 2 3 25 25 H 1.09002 * 109.47301 * 120.02943 * 1 2 3 26 26 H 1.08998 * 109.47477 * 240.03304 * 1 2 3 27 27 H 1.09004 * 109.47536 * 178.54502 * 7 5 4 28 28 H 1.09007 * 109.47199 * 58.54482 * 7 5 4 29 29 H 1.00897 * 111.00410 * 56.04528 * 8 7 5 30 30 H 1.09001 * 109.46974 * 60.00309 * 9 8 7 31 31 H 1.08996 * 109.47333 * 300.00274 * 9 8 7 32 32 H 1.09001 * 109.47671 * 55.00206 * 14 10 9 33 33 H 1.09006 * 109.47297 * 294.99926 * 14 10 9 34 34 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 35 35 H 1.09003 * 110.80365 * 77.05870 * 23 2 1 36 36 H 1.08997 * 110.80635 * 313.54701 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2531 1.0356 0.0000 4 8 3.6328 0.7273 -0.0068 5 6 3.7716 -0.6500 0.3992 6 1 4.5763 -1.1399 -0.1492 7 6 3.9963 -0.7569 1.9088 8 7 5.2394 -0.0621 2.2693 9 6 5.4878 -0.1436 3.7149 10 6 6.7882 0.5891 4.0509 11 1 7.6001 0.1839 3.4468 12 6 6.6313 2.0241 3.7632 13 7 6.5088 3.1318 3.5420 14 6 7.1121 0.3988 5.5341 15 6 8.4531 1.0154 5.8386 16 1 9.0181 1.4947 5.0527 17 6 8.9588 0.9677 7.1203 18 7 8.2711 0.3836 8.0772 19 14 10.6213 1.7314 7.4975 20 1 10.9351 1.5479 8.9373 21 1 11.6670 1.0722 6.6745 22 1 10.5831 3.1817 7.1807 23 6 2.3935 -1.2309 0.0006 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3634 -0.5143 -0.8897 26 1 -0.3634 -0.5133 0.8902 27 1 4.0719 -1.8070 2.1915 28 1 3.1584 -0.2986 2.4342 29 1 5.2199 0.8980 1.9597 30 1 5.5736 -1.1893 4.0103 31 1 4.6602 0.3191 4.2524 32 1 7.1408 -0.6658 5.7661 33 1 6.3444 0.8819 6.1386 34 1 7.4080 -0.0133 7.8812 35 1 2.4346 -1.6788 -0.9923 36 1 2.0502 -1.9550 0.7394 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120492552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:35 Heat of formation + Delta-G solvation = 25.759135 kcal Electronic energy + Delta-G solvation = -17645.099559 eV Core-core repulsion = 14744.654728 eV Total energy + Delta-G solvation = -2900.444831 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.53633 -37.50398 -35.36384 -34.13776 -33.77813 -32.14015 -30.55968 -28.75872 -26.96609 -24.82905 -22.56910 -22.22765 -21.71570 -19.89625 -17.17627 -17.12095 -16.64886 -16.25103 -15.43790 -15.10718 -14.80062 -13.91331 -13.75897 -13.68522 -13.42732 -13.22742 -13.16820 -12.78949 -12.61075 -12.20365 -12.10222 -11.90187 -11.80890 -11.51384 -11.37723 -10.97857 -10.83706 -10.74036 -10.40699 -10.14794 -9.91250 -9.62035 -8.66261 -8.46470 -8.39623 -6.42766 -4.13616 1.55956 2.87612 3.43956 3.46738 3.54011 3.59164 3.64689 3.74617 3.96940 4.22041 4.43516 4.51008 4.59159 4.73638 4.85347 4.99113 5.00632 5.11730 5.16740 5.26165 5.35862 5.40018 5.53398 5.58209 5.66777 5.78523 6.00799 6.21243 6.39643 6.93316 7.09759 7.20290 7.25135 7.35371 8.04165 8.32579 8.42131 8.79954 9.57413 10.98075 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.046581 B = 0.003685 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.953493 B = 7595.772086 C = 7796.788675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.074 3.926 3 N -0.293 5.293 4 O -0.192 6.192 5 C 0.042 3.958 6 H 0.124 0.876 7 C 0.047 3.953 8 N -0.687 5.687 9 C 0.067 3.933 10 C 0.015 3.985 11 H 0.113 0.887 12 C 0.237 3.763 13 N -0.468 5.468 14 C 0.019 3.981 15 C -0.606 4.606 16 H 0.051 0.949 17 C 0.020 3.980 18 N -0.909 5.909 19 Si 1.066 2.934 20 H -0.282 1.282 21 H -0.286 1.286 22 H -0.288 1.288 23 C -0.148 4.148 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.031 0.969 29 H 0.348 0.652 30 H 0.091 0.909 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.015 0.985 34 H 0.269 0.731 35 H 0.104 0.896 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.029 -8.700 -15.254 23.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 N -0.035 5.035 4 O -0.211 6.211 5 C -0.017 4.017 6 H 0.141 0.859 7 C -0.083 4.083 8 N -0.319 5.319 9 C -0.063 4.063 10 C -0.007 4.007 11 H 0.130 0.870 12 C -0.080 4.080 13 N -0.145 5.145 14 C -0.019 4.019 15 C -0.644 4.644 16 H 0.070 0.930 17 C -0.184 4.184 18 N -0.545 5.545 19 Si 0.894 3.106 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.215 1.215 23 C -0.188 4.188 24 H 0.100 0.900 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.049 0.951 29 H 0.167 0.833 30 H 0.109 0.891 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.033 0.967 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.478 -6.078 -14.571 20.758 hybrid contribution -1.568 -1.027 -0.725 2.009 sum -15.045 -7.105 -15.296 22.601 Atomic orbital electron populations 1.20415 0.85487 1.04618 1.03894 1.26300 0.98140 0.92406 0.95103 1.77921 0.89766 1.23506 1.12294 1.91325 1.15134 1.27588 1.87015 1.23855 0.97654 0.83754 0.96425 0.85876 1.22319 0.91825 1.00562 0.93607 1.60520 1.34246 1.21571 1.15555 1.22096 0.96119 1.01433 0.86664 1.19132 0.97789 0.81593 1.02166 0.86963 1.29203 0.92085 0.95295 0.91393 1.81049 1.09823 1.12605 1.11012 1.19275 0.97872 0.97838 0.86944 1.21979 1.03975 1.40784 0.97645 0.93046 1.25801 1.04381 0.95759 0.92471 1.70811 1.14432 1.34539 1.34708 0.83573 0.74667 0.76103 0.76244 1.20686 1.21196 1.21465 1.23155 0.92218 0.98625 1.04781 0.90013 0.89338 0.89367 0.89255 0.95075 0.83324 0.89106 0.94821 0.95165 0.96705 0.92096 0.87825 0.87832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.43 10.49 36.00 0.38 -0.06 16 2 C 0.07 0.66 7.45 -78.57 -0.59 0.07 16 3 N -0.29 -3.86 12.45 35.65 0.44 -3.42 16 4 O -0.19 -2.77 11.72 -11.36 -0.13 -2.90 16 5 C 0.04 0.44 4.09 -25.80 -0.11 0.33 16 6 H 0.12 1.15 8.14 -51.93 -0.42 0.72 16 7 C 0.05 0.53 5.43 -3.83 -0.02 0.51 16 8 N -0.69 -9.82 6.50 -113.78 -0.74 -10.56 16 9 C 0.07 1.03 5.12 -3.82 -0.02 1.01 16 10 C 0.02 0.29 2.42 -93.41 -0.23 0.07 16 11 H 0.11 2.10 8.14 -51.93 -0.42 1.67 16 12 C 0.24 5.13 12.98 -20.76 -0.27 4.86 16 13 N -0.47 -10.94 18.54 42.16 0.78 -10.16 16 14 C 0.02 0.45 3.74 -27.88 -0.10 0.35 16 15 C -0.61 -16.62 8.60 -34.44 -0.30 -16.92 16 16 H 0.05 1.42 7.59 -52.48 -0.40 1.02 16 17 C 0.02 0.57 5.46 -17.82 -0.10 0.48 16 18 N -0.91 -27.02 13.65 55.43 0.76 -26.26 16 19 Si 1.07 25.33 29.90 -169.99 -5.08 20.25 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 C -0.15 -1.04 6.62 -26.46 -0.18 -1.22 16 24 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.03 0.38 8.14 -51.92 -0.42 -0.05 16 29 H 0.35 5.67 7.33 -39.29 -0.29 5.38 16 30 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.03 0.70 8.01 -51.93 -0.42 0.28 16 33 H 0.01 0.37 8.01 -51.93 -0.42 -0.05 16 34 H 0.27 7.81 7.22 -40.82 -0.29 7.52 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.51 7.91 -51.93 -0.41 0.10 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -33.61 313.96 -6.01 -39.62 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -5.25 Total: -0.79 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -1.52 Total: -10.51 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 1.24 Total: -50.40 kcal Atomic # 8 Polarization: -2.77 SS G_CDS: -0.13 Total: -2.90 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.25 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.61 -6.01 -39.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120492552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.383 kcal (2) G-P(sol) polarization free energy of solvation -33.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds