Wall clock time and date at job start Sun Mar 29 2020 23:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.27643 * 125.77382 * 2 1 4 4 O 1.41375 * 113.17551 * 180.30031 * 3 2 1 5 5 C 1.44251 * 107.50523 * 342.62679 * 4 3 2 6 6 H 1.09004 * 111.01173 * 143.21367 * 5 4 3 7 7 C 1.52999 * 111.01178 * 267.04128 * 5 4 3 8 8 N 1.46898 * 109.47257 * 298.54869 * 7 5 4 9 9 C 1.46901 * 111.00004 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.47062 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47114 * 305.00018 * 10 9 8 12 12 C 1.47199 * 109.47168 * 65.00318 * 10 9 8 13 13 N 6.88275 * 136.61193 * 48.51794 * 2 1 3 14 14 C 1.52998 * 109.47071 * 185.00307 * 10 9 8 15 15 C 1.50706 * 109.47348 * 174.99997 * 14 10 9 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 10 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 10 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 300.00068 * 19 17 15 22 22 H 1.48504 * 109.47102 * 60.00417 * 19 17 15 23 23 C 1.51692 * 125.76488 * 179.97438 * 2 1 3 24 24 H 1.09007 * 109.46802 * 0.02870 * 1 2 3 25 25 H 1.09002 * 109.47301 * 120.02943 * 1 2 3 26 26 H 1.08998 * 109.47477 * 240.03304 * 1 2 3 27 27 H 1.09004 * 109.47536 * 178.54502 * 7 5 4 28 28 H 1.09007 * 109.47199 * 58.54482 * 7 5 4 29 29 H 1.00897 * 111.00410 * 56.04528 * 8 7 5 30 30 H 1.09001 * 109.46974 * 60.00309 * 9 8 7 31 31 H 1.08996 * 109.47333 * 300.00274 * 9 8 7 32 32 H 1.09001 * 109.47671 * 55.00206 * 14 10 9 33 33 H 1.09006 * 109.47297 * 294.99926 * 14 10 9 34 34 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 35 35 H 1.09003 * 110.80365 * 77.05870 * 23 2 1 36 36 H 1.08997 * 110.80635 * 313.54701 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2531 1.0356 0.0000 4 8 3.6328 0.7273 -0.0068 5 6 3.7716 -0.6500 0.3992 6 1 4.5763 -1.1399 -0.1492 7 6 3.9963 -0.7569 1.9088 8 7 5.2394 -0.0621 2.2693 9 6 5.4878 -0.1436 3.7149 10 6 6.7882 0.5891 4.0509 11 1 7.6001 0.1839 3.4468 12 6 6.6313 2.0241 3.7632 13 7 6.5088 3.1318 3.5420 14 6 7.1121 0.3988 5.5341 15 6 8.4531 1.0154 5.8386 16 1 9.0181 1.4947 5.0527 17 6 8.9588 0.9677 7.1203 18 7 8.2711 0.3836 8.0772 19 14 10.6213 1.7314 7.4975 20 1 10.9351 1.5479 8.9373 21 1 11.6670 1.0722 6.6745 22 1 10.5831 3.1817 7.1807 23 6 2.3935 -1.2309 0.0006 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3634 -0.5143 -0.8897 26 1 -0.3634 -0.5133 0.8902 27 1 4.0719 -1.8070 2.1915 28 1 3.1584 -0.2986 2.4342 29 1 5.2199 0.8980 1.9597 30 1 5.5736 -1.1893 4.0103 31 1 4.6602 0.3191 4.2524 32 1 7.1408 -0.6658 5.7661 33 1 6.3444 0.8819 6.1386 34 1 7.4080 -0.0133 7.8812 35 1 2.4346 -1.6788 -0.9923 36 1 2.0502 -1.9550 0.7394 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120492552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:34 Heat of formation + Delta-G solvation = 1.956734 kcal Electronic energy + Delta-G solvation = -17646.131708 eV Core-core repulsion = 14744.654728 eV Total energy + Delta-G solvation = -2901.476981 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.29062 -39.01632 -36.74633 -35.82907 -34.78143 -33.61610 -31.69272 -29.29967 -28.39566 -26.23766 -24.15919 -23.79363 -22.60174 -20.58462 -19.09745 -18.38916 -17.94408 -17.14326 -16.21512 -16.17288 -15.94552 -15.61249 -15.35562 -14.98141 -14.39380 -14.32069 -14.10927 -13.96915 -13.69803 -13.44909 -13.40305 -13.30920 -12.98328 -12.68322 -12.60899 -12.38622 -12.34714 -12.08715 -11.98438 -11.71755 -11.52227 -10.72405 -10.54318 -10.41798 -9.57985 -8.65835 -6.36745 0.90374 1.52986 1.59271 1.78402 1.80288 1.82900 2.14644 2.55051 2.94006 3.07837 3.19407 3.21704 3.59013 3.72930 3.76819 3.95877 4.13047 4.24904 4.43527 4.50870 4.58996 4.61699 4.70508 4.72826 4.76830 4.80198 4.86828 4.95436 5.17409 5.29822 5.35552 5.81171 5.96889 6.08999 6.18637 6.50693 6.60530 6.63704 7.40654 8.76491 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.046581 B = 0.003685 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.953493 B = 7595.772086 C = 7796.788675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.091 3.909 3 N -0.352 5.352 4 O -0.236 6.236 5 C 0.034 3.966 6 H 0.130 0.870 7 C 0.048 3.952 8 N -0.689 5.689 9 C 0.079 3.921 10 C 0.024 3.976 11 H 0.124 0.876 12 C 0.247 3.753 13 N -0.502 5.502 14 C 0.024 3.976 15 C -0.618 4.618 16 H 0.044 0.956 17 C -0.029 4.029 18 N -0.934 5.934 19 Si 1.106 2.894 20 H -0.281 1.281 21 H -0.263 1.263 22 H -0.285 1.285 23 C -0.139 4.139 24 H 0.071 0.929 25 H 0.117 0.883 26 H 0.111 0.889 27 H 0.117 0.883 28 H 0.021 0.979 29 H 0.333 0.667 30 H 0.116 0.884 31 H 0.027 0.973 32 H 0.037 0.963 33 H -0.005 1.005 34 H 0.262 0.738 35 H 0.127 0.873 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.849 -10.678 -16.183 25.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 N -0.098 5.098 4 O -0.252 6.252 5 C -0.025 4.025 6 H 0.148 0.852 7 C -0.082 4.082 8 N -0.319 5.319 9 C -0.052 4.052 10 C 0.003 3.997 11 H 0.141 0.859 12 C -0.070 4.070 13 N -0.180 5.180 14 C -0.015 4.015 15 C -0.656 4.656 16 H 0.063 0.937 17 C -0.228 4.228 18 N -0.572 5.572 19 Si 0.928 3.072 20 H -0.206 1.206 21 H -0.188 1.188 22 H -0.211 1.211 23 C -0.178 4.178 24 H 0.090 0.910 25 H 0.135 0.865 26 H 0.129 0.871 27 H 0.135 0.865 28 H 0.039 0.961 29 H 0.150 0.850 30 H 0.134 0.866 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.014 0.986 34 H 0.071 0.929 35 H 0.145 0.855 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.295 -8.084 -15.523 22.598 hybrid contribution -1.416 -0.459 -0.475 1.562 sum -15.710 -8.543 -15.999 23.995 Atomic orbital electron populations 1.20652 0.82768 1.04820 1.06257 1.27102 0.99678 0.92392 0.90984 1.77944 0.89524 1.25661 1.16690 1.91275 1.16577 1.29644 1.87687 1.24036 0.99945 0.82869 0.95649 0.85208 1.22471 0.89878 1.01374 0.94448 1.60548 1.36288 1.20764 1.14304 1.21971 0.93580 1.01984 0.87620 1.19131 1.00443 0.80607 0.99558 0.85872 1.29717 0.91010 0.95745 0.90498 1.81042 1.11182 1.13726 1.12038 1.19142 0.95502 0.97520 0.89351 1.22382 1.05454 1.40305 0.97427 0.93724 1.27074 1.07121 0.95792 0.92835 1.70913 1.14694 1.36217 1.35334 0.83057 0.71942 0.75711 0.76451 1.20619 1.18825 1.21087 1.23216 0.89571 0.98148 1.06907 0.91000 0.86515 0.87095 0.86507 0.96074 0.84962 0.86641 0.95423 0.94446 0.98645 0.92871 0.85483 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 10.49 71.23 0.75 0.11 16 2 C 0.09 1.44 7.45 46.90 0.35 1.79 16 3 N -0.35 -9.31 12.45 -40.62 -0.51 -9.81 16 4 O -0.24 -6.89 11.72 -38.28 -0.45 -7.34 16 5 C 0.03 0.64 4.09 31.20 0.13 0.77 16 6 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 7 C 0.05 0.98 5.43 86.30 0.47 1.45 16 8 N -0.69 -18.93 6.50 -513.88 -3.34 -22.27 16 9 C 0.08 2.31 5.12 86.30 0.44 2.75 16 10 C 0.02 0.92 2.42 -12.60 -0.03 0.89 16 11 H 0.12 4.44 8.14 -2.38 -0.02 4.42 16 12 C 0.25 10.73 12.98 89.44 1.16 11.89 16 13 N -0.50 -23.82 18.54 20.01 0.37 -23.45 16 14 C 0.02 1.10 3.74 29.85 0.11 1.21 16 15 C -0.62 -33.80 8.60 25.60 0.22 -33.58 16 16 H 0.04 2.45 7.59 -2.91 -0.02 2.43 16 17 C -0.03 -1.66 5.46 84.65 0.46 -1.20 16 18 N -0.93 -55.70 13.65 21.45 0.29 -55.41 16 19 Si 1.11 50.53 29.90 68.60 2.05 52.58 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 C -0.14 -1.52 6.62 30.77 0.20 -1.31 16 24 H 0.07 0.69 8.14 -2.38 -0.02 0.68 16 25 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 26 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.12 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.02 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.33 10.92 7.33 -89.70 -0.66 10.27 16 30 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.04 1.70 8.01 -2.39 -0.02 1.68 16 33 H 0.00 -0.24 8.01 -2.38 -0.02 -0.26 16 34 H 0.26 15.38 7.22 -92.71 -0.67 14.71 16 35 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.13 0.69 7.91 -2.39 -0.02 0.67 16 Total: -1.00 -74.46 313.96 3.20 -71.25 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.52 Total: 9.67 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 4.26 Total: -15.22 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -3.18 Total: -110.94 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.45 Total: -7.34 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.05 Total: 52.58 kcal Total: -74.46 3.20 -71.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120492552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.209 kcal (2) G-P(sol) polarization free energy of solvation -74.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds