Wall clock time and date at job start Sun Mar 29 2020 23:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.27640 * 125.76597 * 2 1 4 4 O 1.41378 * 113.17236 * 180.30044 * 3 2 1 5 5 C 1.44251 * 107.50566 * 342.62657 * 4 3 2 6 6 H 1.09002 * 111.01067 * 267.04366 * 5 4 3 7 7 C 1.53003 * 111.01298 * 143.21070 * 5 4 3 8 8 N 1.46900 * 109.46577 * 69.60098 * 7 5 4 9 9 C 1.46902 * 110.99714 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.47267 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.47440 * 304.99881 * 10 9 8 12 12 C 1.47207 * 109.47161 * 65.00380 * 10 9 8 13 13 N 7.97615 * 159.89756 * 121.64876 * 2 1 3 14 14 C 1.53004 * 109.47204 * 184.99997 * 10 9 8 15 15 C 1.50701 * 109.47418 * 175.00345 * 14 10 9 16 16 H 1.08008 * 119.99300 * 359.97438 * 15 14 10 17 17 C 1.37877 * 120.00284 * 179.97438 * 15 14 10 18 18 N 1.31513 * 119.99906 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99897 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46780 * 89.99944 * 19 17 15 21 21 H 1.48499 * 109.46936 * 209.99868 * 19 17 15 22 22 H 1.48503 * 109.47395 * 330.00206 * 19 17 15 23 23 C 1.51679 * 125.77133 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47476 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46890 * 119.98065 * 1 2 3 26 26 H 1.08999 * 109.46917 * 239.97546 * 1 2 3 27 27 H 1.09001 * 109.47099 * 189.60236 * 7 5 4 28 28 H 1.08997 * 109.47049 * 309.60633 * 7 5 4 29 29 H 1.00895 * 111.00300 * 56.04673 * 8 7 5 30 30 H 1.09006 * 109.47558 * 300.00272 * 9 8 7 31 31 H 1.09004 * 109.47348 * 59.99966 * 9 8 7 32 32 H 1.09000 * 109.47029 * 295.00145 * 14 10 9 33 33 H 1.09000 * 109.47240 * 54.99940 * 14 10 9 34 34 H 0.96998 * 119.99867 * 179.97438 * 18 17 15 35 35 H 1.08998 * 110.80660 * 77.05419 * 23 2 1 36 36 H 1.09003 * 110.80317 * 313.55059 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2531 1.0357 0.0000 4 8 3.6328 0.7274 -0.0068 5 6 3.7718 -0.6498 0.3992 6 1 3.9318 -0.7259 1.4747 7 6 4.9012 -1.3374 -0.3706 8 7 6.1935 -0.7907 0.0642 9 6 7.3039 -1.4285 -0.6558 10 6 8.6301 -0.8341 -0.1776 11 1 8.6044 0.2497 -0.2907 12 6 8.8380 -1.1748 1.2393 13 7 8.9973 -1.4384 2.3337 14 6 9.7765 -1.4070 -1.0133 15 6 11.0669 -0.7316 -0.6260 16 1 11.0688 0.0304 0.1394 17 6 12.2447 -1.0864 -1.2487 18 7 12.2423 -2.0146 -2.1804 19 14 13.8440 -0.2487 -0.7690 20 1 14.4883 -1.0065 0.3337 21 1 14.7541 -0.2111 -1.9418 22 1 13.5607 1.1374 -0.3175 23 6 2.3937 -1.2307 0.0006 24 1 -0.3634 1.0277 0.0005 25 1 -0.3633 -0.5135 -0.8902 26 1 -0.3633 -0.5142 0.8898 27 1 4.8752 -2.4091 -0.1736 28 1 4.7729 -1.1610 -1.4385 29 1 6.3083 -0.8840 1.0622 30 1 7.2948 -2.5010 -0.4612 31 1 7.1920 -1.2525 -1.7257 32 1 9.8585 -2.4786 -0.8315 33 1 9.5780 -1.2321 -2.0707 34 1 13.0709 -2.2639 -2.6187 35 1 2.4348 -1.6787 -0.9922 36 1 2.0504 -1.9548 0.7394 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120492553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:40 Heat of formation + Delta-G solvation = 31.159002 kcal Electronic energy + Delta-G solvation = -17405.055934 eV Core-core repulsion = 14504.845259 eV Total energy + Delta-G solvation = -2900.210675 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.36834 -37.48157 -35.42106 -34.04613 -33.56922 -32.13709 -30.58134 -28.70003 -27.13539 -25.04020 -22.57793 -22.07064 -21.52825 -19.99840 -16.87826 -16.76408 -16.55894 -16.28266 -15.63659 -14.85192 -14.63764 -14.28466 -14.02703 -13.57558 -13.27825 -13.11056 -13.04971 -12.73330 -12.61122 -12.32748 -12.06231 -11.78128 -11.66414 -11.48326 -11.22178 -11.02785 -10.80497 -10.73148 -10.52321 -10.25643 -9.59127 -9.53463 -9.22950 -8.45311 -8.37728 -6.09228 -4.12185 1.59931 2.91781 3.30820 3.37208 3.41211 3.54213 3.60089 3.69713 4.07598 4.23808 4.41303 4.49084 4.61933 4.78427 4.89768 4.98271 5.03920 5.10997 5.19997 5.27157 5.28963 5.46356 5.51870 5.66707 5.69071 5.85538 6.13212 6.33173 6.54153 6.99236 7.26465 7.36760 7.43846 7.52637 7.86058 8.23543 8.38781 8.92352 9.53323 11.01737 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.048013 B = 0.003388 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.036723 B = 8261.448576 C = 8356.008864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.072 3.928 3 N -0.296 5.296 4 O -0.175 6.175 5 C 0.045 3.955 6 H 0.084 0.916 7 C 0.066 3.934 8 N -0.686 5.686 9 C 0.069 3.931 10 C 0.006 3.994 11 H 0.113 0.887 12 C 0.242 3.758 13 N -0.477 5.477 14 C 0.033 3.967 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.150 4.150 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.339 0.661 30 H 0.035 0.965 31 H 0.093 0.907 32 H 0.024 0.976 33 H 0.040 0.960 34 H 0.262 0.738 35 H 0.103 0.897 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.102 -0.867 1.043 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 N -0.037 5.037 4 O -0.194 6.194 5 C -0.014 4.014 6 H 0.102 0.898 7 C -0.065 4.065 8 N -0.317 5.317 9 C -0.061 4.061 10 C -0.016 4.016 11 H 0.131 0.869 12 C -0.075 4.075 13 N -0.155 5.155 14 C -0.006 4.006 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.190 4.190 24 H 0.100 0.900 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.157 0.843 30 H 0.054 0.946 31 H 0.111 0.889 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.122 0.878 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.544 0.404 2.086 22.644 hybrid contribution 1.129 -1.386 0.305 1.813 sum -21.415 -0.982 2.391 21.571 Atomic orbital electron populations 1.20406 0.85598 1.04531 1.03823 1.26222 0.98047 0.92316 0.95541 1.77881 0.90263 1.23629 1.11938 1.91414 1.13949 1.26651 1.87421 1.23715 0.94419 0.83493 0.99774 0.89782 1.22020 0.88309 0.95656 1.00501 1.60471 1.00935 1.60073 1.10242 1.22093 0.88539 0.95823 0.99647 1.19343 0.96153 1.03137 0.82947 0.86941 1.29366 0.91339 0.91979 0.94799 1.81069 1.10389 1.10517 1.13481 1.19164 0.90006 0.96648 0.94767 1.21154 0.92205 1.21740 1.21330 0.92466 1.24953 0.99186 0.95010 0.94844 1.69936 1.27539 1.30444 1.25189 0.86583 0.83307 0.80116 0.78033 1.20700 1.21072 1.19671 1.23134 0.92251 0.98603 1.04998 0.90024 0.89377 0.89527 0.93399 0.89542 0.84319 0.94635 0.88883 0.95763 0.94154 0.92802 0.87831 0.88114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.39 10.49 36.01 0.38 -0.01 16 2 C 0.07 0.63 7.45 -78.58 -0.59 0.04 16 3 N -0.30 -3.81 12.45 35.64 0.44 -3.37 16 4 O -0.17 -2.55 12.24 -11.36 -0.14 -2.69 16 5 C 0.05 0.48 4.00 -25.80 -0.10 0.38 16 6 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 7 C 0.07 0.71 5.38 -3.82 -0.02 0.69 16 8 N -0.69 -9.42 6.50 -113.78 -0.74 -10.16 16 9 C 0.07 1.02 5.12 -3.82 -0.02 1.00 16 10 C 0.01 0.12 2.42 -93.40 -0.23 -0.11 16 11 H 0.11 2.07 8.14 -51.93 -0.42 1.65 16 12 C 0.24 4.94 12.98 -20.73 -0.27 4.67 16 13 N -0.48 -10.47 18.54 42.19 0.78 -9.68 16 14 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 15 C -0.53 -14.17 8.60 -34.44 -0.30 -14.46 16 16 H 0.06 1.54 7.59 -52.48 -0.40 1.14 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 19 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.15 -1.10 6.63 -26.47 -0.18 -1.28 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.34 4.75 7.81 -39.29 -0.31 4.44 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.10 0.64 7.91 -51.93 -0.41 0.23 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 316.15 15.07 4.76 4.76 Total: -1.00 -32.55 316.15 -6.03 -38.58 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -5.32 Total: -2.19 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -1.54 Total: -6.82 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 1.22 Total: -48.17 kcal Atomic # 8 Polarization: -2.55 SS G_CDS: -0.14 Total: -2.69 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.55 -6.03 -38.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120492553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.742 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds