Wall clock time and date at job start Sun Mar 29 2020 23:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.27642 * 125.77109 * 2 1 4 4 O 1.41381 * 113.17862 * 180.33842 * 3 2 1 5 5 C 1.44257 * 107.50140 * 342.62590 * 4 3 2 6 6 H 1.08991 * 111.01407 * 267.00971 * 5 4 3 7 7 C 1.53002 * 111.00943 * 143.17172 * 5 4 3 8 8 N 1.46907 * 109.46793 * 69.60284 * 7 5 4 9 9 C 1.46900 * 110.99641 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.46619 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.47070 * 55.00278 * 10 9 8 12 12 C 1.47194 * 109.47253 * 295.00217 * 10 9 8 13 13 N 7.47446 * 165.40528 * 333.50693 * 2 1 3 14 14 C 1.52997 * 109.46817 * 175.00098 * 10 9 8 15 15 C 1.50705 * 109.47390 * 184.99865 * 14 10 9 16 16 H 1.08000 * 119.99498 * 0.02562 * 15 14 10 17 17 C 1.37870 * 120.00441 * 180.02562 * 15 14 10 18 18 N 1.31513 * 119.99840 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00083 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47080 * 89.99765 * 19 17 15 21 21 H 1.48497 * 109.46846 * 209.99784 * 19 17 15 22 22 H 1.48499 * 109.47093 * 329.99702 * 19 17 15 23 23 C 1.51747 * 125.75565 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.46692 * 359.97142 * 1 2 3 25 25 H 1.08994 * 109.47506 * 119.97500 * 1 2 3 26 26 H 1.08997 * 109.46868 * 239.97643 * 1 2 3 27 27 H 1.08997 * 109.47631 * 309.60394 * 7 5 4 28 28 H 1.09003 * 109.47002 * 189.60033 * 7 5 4 29 29 H 1.00900 * 110.99873 * 303.95050 * 8 7 5 30 30 H 1.09000 * 109.47154 * 60.00280 * 9 8 7 31 31 H 1.08996 * 109.47574 * 299.99823 * 9 8 7 32 32 H 1.09001 * 109.47630 * 305.00128 * 14 10 9 33 33 H 1.09004 * 109.47346 * 65.00258 * 14 10 9 34 34 H 0.97002 * 119.99729 * 180.02562 * 18 17 15 35 35 H 1.09001 * 110.80591 * 77.02124 * 23 2 1 36 36 H 1.08995 * 110.83922 * 313.49019 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2531 1.0356 0.0000 4 8 3.6329 0.7274 -0.0077 5 6 3.7720 -0.6500 0.3977 6 1 3.9332 -0.7266 1.4729 7 6 4.9004 -1.3376 -0.3736 8 7 6.1934 -0.7913 0.0598 9 6 7.3028 -1.4300 -0.6608 10 6 8.6297 -0.8360 -0.1839 11 1 8.7024 -0.9323 0.8994 12 6 8.6919 0.5870 -0.5553 13 7 8.7403 1.6856 -0.8402 14 6 9.7898 -1.5859 -0.8416 15 6 11.0952 -1.0841 -0.2801 16 1 11.0971 -0.3081 0.4711 17 6 12.2869 -1.6155 -0.7253 18 7 12.2846 -2.5607 -1.6396 19 14 13.9049 -0.9938 -0.0287 20 1 14.2750 -1.8024 1.1607 21 1 14.9668 -1.1151 -1.0596 22 1 13.7591 0.4301 0.3666 23 6 2.3937 -1.2314 0.0006 24 1 -0.3633 1.0277 0.0005 25 1 -0.3634 -0.5134 -0.8901 26 1 -0.3633 -0.5142 0.8898 27 1 4.7709 -1.1609 -1.4413 28 1 4.8744 -2.4094 -0.1769 29 1 6.2183 0.2111 -0.0524 30 1 7.1901 -1.2543 -1.7306 31 1 7.2934 -2.5023 -0.4657 32 1 9.6937 -2.6528 -0.6399 33 1 9.7683 -1.4164 -1.9181 34 1 13.1230 -2.9348 -1.9526 35 1 2.4342 -1.6798 -0.9922 36 1 2.0513 -1.9554 0.7399 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120492554.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:43 Heat of formation + Delta-G solvation = 6.286466 kcal Electronic energy + Delta-G solvation = -17439.614625 eV Core-core repulsion = 14538.325395 eV Total energy + Delta-G solvation = -2901.289229 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.17270 -38.90502 -36.74307 -35.54188 -34.74322 -33.65272 -31.74316 -29.25839 -28.64292 -26.32647 -23.94350 -23.61342 -22.50946 -20.65631 -18.56437 -18.30314 -17.81904 -17.11373 -16.70103 -16.38876 -15.77502 -15.62653 -14.87303 -14.74954 -14.45921 -14.22038 -14.03114 -13.87193 -13.73010 -13.55293 -13.36211 -13.11197 -12.94725 -12.69190 -12.55527 -12.50307 -12.33290 -12.24865 -11.98266 -11.49981 -11.40327 -11.15742 -10.55564 -10.40616 -9.51074 -8.20655 -6.28658 0.90995 1.39480 1.41251 1.50632 1.90896 1.93677 2.12430 2.40669 2.89905 3.14248 3.22825 3.30081 3.61322 3.73685 3.90320 4.05571 4.17488 4.37746 4.49549 4.59447 4.65104 4.70858 4.71532 4.78700 4.86539 4.93099 4.96262 5.01932 5.33183 5.45988 5.61174 5.78040 5.91845 6.16651 6.20211 6.50184 6.72524 6.85757 7.39851 8.90289 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.055823 B = 0.003426 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.461440 B = 8170.931440 C = 8478.784883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.094 3.906 3 N -0.349 5.349 4 O -0.244 6.244 5 C 0.035 3.965 6 H 0.092 0.908 7 C 0.068 3.932 8 N -0.693 5.693 9 C 0.078 3.922 10 C 0.018 3.982 11 H 0.124 0.876 12 C 0.249 3.751 13 N -0.508 5.508 14 C 0.040 3.960 15 C -0.541 4.541 16 H 0.052 0.948 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.949 3.051 20 H -0.265 1.265 21 H -0.283 1.283 22 H -0.278 1.278 23 C -0.142 4.142 24 H 0.074 0.926 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.034 0.966 28 H 0.121 0.879 29 H 0.333 0.667 30 H 0.031 0.969 31 H 0.117 0.883 32 H 0.041 0.959 33 H 0.000 1.000 34 H 0.265 0.735 35 H 0.118 0.882 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.651 -4.735 4.198 25.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 N -0.095 5.095 4 O -0.260 6.260 5 C -0.024 4.024 6 H 0.110 0.890 7 C -0.062 4.062 8 N -0.324 5.324 9 C -0.052 4.052 10 C -0.004 4.004 11 H 0.142 0.858 12 C -0.067 4.067 13 N -0.186 5.186 14 C 0.001 3.999 15 C -0.579 4.579 16 H 0.070 0.930 17 C -0.187 4.187 18 N -0.562 5.562 19 Si 0.775 3.225 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.204 1.204 23 C -0.181 4.181 24 H 0.093 0.907 25 H 0.131 0.869 26 H 0.134 0.866 27 H 0.052 0.948 28 H 0.139 0.861 29 H 0.150 0.850 30 H 0.050 0.950 31 H 0.135 0.865 32 H 0.060 0.940 33 H 0.018 0.982 34 H 0.073 0.927 35 H 0.136 0.864 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -24.167 -2.403 4.160 24.640 hybrid contribution 1.471 -0.248 -0.644 1.624 sum -22.696 -2.651 3.516 23.120 Atomic orbital electron populations 1.20667 0.82414 1.04988 1.06324 1.27121 0.99766 0.92141 0.90782 1.77932 0.89128 1.25551 1.16882 1.91253 1.16815 1.29459 1.88447 1.23951 0.96095 0.81782 1.00537 0.88978 1.22152 0.86748 1.00810 0.96485 1.60592 1.02542 1.09674 1.59546 1.21973 0.87134 1.00783 0.95267 1.19288 0.97069 0.80579 1.03481 0.85807 1.29781 0.90326 0.95340 0.91265 1.81037 1.11511 1.14517 1.11488 1.18986 0.90196 0.95993 0.94739 1.21557 0.92522 1.20836 1.22977 0.92991 1.25700 1.02474 0.95215 0.95326 1.70025 1.27839 1.27822 1.30561 0.85688 0.79677 0.78607 0.78562 1.18987 1.20903 1.20353 1.23211 0.89680 0.98356 1.06880 0.90713 0.86862 0.86627 0.94757 0.86067 0.85020 0.95031 0.86519 0.94041 0.98151 0.92655 0.86369 0.84318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.52 10.49 71.24 0.75 0.23 16 2 C 0.09 1.45 7.45 46.92 0.35 1.80 16 3 N -0.35 -9.08 12.45 -40.57 -0.51 -9.59 16 4 O -0.24 -7.29 12.02 -38.29 -0.46 -7.75 16 5 C 0.03 0.71 4.03 31.20 0.13 0.83 16 6 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 7 C 0.07 1.37 5.39 86.30 0.47 1.83 16 8 N -0.69 -18.56 6.50 -513.87 -3.34 -21.90 16 9 C 0.08 2.24 5.12 86.30 0.44 2.68 16 10 C 0.02 0.65 2.42 -12.60 -0.03 0.62 16 11 H 0.12 4.30 8.14 -2.39 -0.02 4.29 16 12 C 0.25 10.59 12.98 89.44 1.16 11.75 16 13 N -0.51 -23.67 18.54 20.00 0.37 -23.30 16 14 C 0.04 1.84 4.42 29.85 0.13 1.98 16 15 C -0.54 -29.10 8.60 25.60 0.22 -28.88 16 16 H 0.05 2.79 7.59 -2.91 -0.02 2.77 16 17 C 0.01 0.66 5.46 84.65 0.46 1.12 16 18 N -0.92 -53.17 13.29 21.44 0.28 -52.88 16 19 Si 0.95 43.98 29.54 68.60 2.03 46.01 16 20 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 C -0.14 -1.64 6.63 30.79 0.20 -1.44 16 24 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 26 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 27 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.33 10.54 7.60 -89.69 -0.68 9.86 16 30 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.12 2.81 8.14 -2.39 -0.02 2.80 16 32 H 0.04 1.91 8.14 -2.39 -0.02 1.90 16 33 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 35 H 0.12 1.06 7.91 -2.39 -0.02 1.04 16 36 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -72.36 315.75 3.05 -69.31 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 0.39 Total: 7.56 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 4.28 Total: -7.47 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -3.19 Total: -107.66 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.46 Total: -7.75 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -72.36 3.05 -69.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120492554.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.597 kcal (2) G-P(sol) polarization free energy of solvation -72.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds