Wall clock time and date at job start Sun Mar 29 2020 22:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35456 * 125.56667 * 2 1 4 4 C 1.39831 * 107.86830 * 180.02562 * 3 2 1 5 5 C 1.37868 * 107.08335 * 359.97438 * 4 3 2 6 6 C 1.46680 * 126.22952 * 179.97438 * 5 4 3 7 7 O 1.21700 * 120.00057 * 174.88756 * 6 5 4 8 8 N 1.34773 * 120.00254 * 354.88844 * 6 5 4 9 9 C 1.46500 * 120.00119 * 175.47677 * 8 6 5 10 10 C 1.53002 * 109.47182 * 179.97438 * 9 8 6 11 11 N 1.46501 * 109.46948 * 179.97438 * 10 9 8 12 12 C 1.36943 * 119.99656 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00134 * 0.02562 * 12 11 10 14 14 C 1.38814 * 119.99811 * 179.97438 * 12 11 10 15 15 N 1.31614 * 119.99884 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99949 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47271 * 89.99586 * 16 14 12 18 18 H 1.48500 * 109.46822 * 209.99737 * 16 14 12 19 19 H 1.48499 * 109.46937 * 329.99611 * 16 14 12 20 20 N 1.35537 * 125.56636 * 180.30367 * 2 1 3 21 21 C 1.46498 * 125.67514 * 0.02562 * 20 2 1 22 22 H 1.08989 * 109.47055 * 89.98102 * 1 2 3 23 23 H 1.09006 * 109.46927 * 209.98011 * 1 2 3 24 24 H 1.09001 * 109.47200 * 329.97866 * 1 2 3 25 25 H 1.08004 * 126.06075 * 0.04949 * 3 2 1 26 26 H 1.08001 * 126.45783 * 180.02562 * 4 3 2 27 27 H 0.97000 * 120.00162 * 355.47206 * 8 6 5 28 28 H 1.09007 * 109.47135 * 299.99753 * 9 8 6 29 29 H 1.08998 * 109.47456 * 59.99656 * 9 8 6 30 30 H 1.08996 * 109.46993 * 299.99504 * 10 9 8 31 31 H 1.08998 * 109.47204 * 59.99504 * 10 9 8 32 32 H 0.96994 * 120.00081 * 0.02562 * 11 10 9 33 33 H 0.97000 * 120.00035 * 179.97438 * 15 14 12 34 34 H 1.08996 * 109.47215 * 266.85769 * 21 20 2 35 35 H 1.08994 * 109.47431 * 26.85725 * 21 20 2 36 36 H 1.09004 * 109.46884 * 146.85936 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2949 1.1019 0.0000 4 6 3.6270 0.6768 -0.0006 5 6 3.6122 -0.7018 -0.0004 6 6 4.7860 -1.5814 -0.0013 7 8 4.6436 -2.7864 0.0929 8 7 6.0223 -1.0552 -0.1066 9 6 7.1986 -1.9230 -0.0081 10 6 8.4673 -1.0815 -0.1605 11 7 9.6435 -1.9492 -0.0613 12 6 10.8997 -1.4146 -0.1692 13 1 11.0232 -0.3534 -0.3270 14 6 12.0143 -2.2367 -0.0748 15 7 13.2215 -1.7230 -0.1790 16 14 11.8005 -4.0722 0.1988 17 1 11.7117 -4.7613 -1.1137 18 1 12.9642 -4.5985 0.9564 19 1 10.5558 -4.3159 0.9711 20 7 2.2953 -1.1025 -0.0058 21 6 1.8242 -2.4896 -0.0137 22 1 -0.3633 0.0003 -1.0276 23 1 -0.3633 -0.8902 0.5136 24 1 -0.3634 0.8898 0.5142 25 1 1.9544 2.1268 0.0008 26 1 4.5025 1.3092 -0.0004 27 1 6.1333 -0.1020 -0.2476 28 1 7.2048 -2.4177 0.9632 29 1 7.1637 -2.6734 -0.7978 30 1 8.4609 -0.5872 -1.1319 31 1 8.5024 -0.3308 0.6290 32 1 9.5325 -2.9024 0.0799 33 1 14.0004 -2.2974 -0.1126 34 1 1.7603 -2.8575 1.0103 35 1 0.8395 -2.5363 -0.4786 36 1 2.5224 -3.1072 -0.5788 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123491381.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:21 Heat of formation + Delta-G solvation = 21.938784 kcal Electronic energy + Delta-G solvation = -17618.608723 eV Core-core repulsion = 14717.998229 eV Total energy + Delta-G solvation = -2900.610494 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60679 -39.08809 -35.86673 -34.11404 -32.96335 -32.04340 -31.33810 -28.64564 -26.68262 -26.45496 -23.46088 -21.98980 -21.50187 -20.33601 -19.28871 -18.05861 -17.36144 -16.03572 -15.98228 -15.23126 -15.14170 -14.51609 -14.02444 -13.80789 -13.75224 -13.55137 -13.43347 -13.28879 -13.02988 -12.64188 -12.21671 -12.18745 -12.04342 -11.58712 -11.50486 -10.95740 -10.85393 -10.16683 -9.99421 -9.62496 -9.08156 -8.91811 -8.90552 -8.19736 -7.30656 -5.80118 -3.17569 1.35497 2.46901 2.52358 3.33870 3.36713 3.38515 3.41834 3.46156 4.52537 4.57399 4.58099 4.72184 4.85803 5.03109 5.17280 5.24374 5.28987 5.36884 5.39799 5.44542 5.52546 5.60192 5.64803 5.91106 5.93902 6.00897 6.36824 6.56456 6.58767 6.68597 6.83104 7.02459 7.54230 7.93529 8.20995 8.37935 9.15611 9.87850 10.06145 11.37765 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.051947 B = 0.003616 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.880127 B = 7741.613213 C = 8243.998313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.037 3.963 3 C -0.206 4.206 4 C -0.138 4.138 5 C -0.050 4.050 6 C 0.586 3.414 7 O -0.554 6.554 8 N -0.710 5.710 9 C 0.110 3.890 10 C 0.148 3.852 11 N -0.752 5.752 12 C -0.248 4.248 13 H 0.092 0.908 14 C 0.007 3.993 15 N -0.932 5.932 16 Si 0.885 3.115 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.276 1.276 20 N -0.408 5.408 21 C 0.068 3.932 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.142 0.858 26 H 0.146 0.854 27 H 0.404 0.596 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.363 0.637 33 H 0.261 0.739 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.079 3.779 0.150 27.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.230 4.230 4 C -0.164 4.164 5 C -0.163 4.163 6 C 0.374 3.626 7 O -0.434 6.434 8 N -0.361 5.361 9 C -0.013 4.013 10 C 0.020 3.980 11 N -0.399 5.399 12 C -0.378 4.378 13 H 0.110 0.890 14 C -0.189 4.189 15 N -0.579 5.579 16 Si 0.715 3.285 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.202 1.202 20 N -0.082 5.082 21 C -0.073 4.073 22 H 0.092 0.908 23 H 0.083 0.917 24 H 0.102 0.898 25 H 0.160 0.840 26 H 0.164 0.836 27 H 0.239 0.761 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.196 0.804 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -27.055 2.681 0.202 27.188 hybrid contribution 0.112 -0.847 0.168 0.871 sum -26.942 1.833 0.370 27.007 Atomic orbital electron populations 1.20374 0.87839 1.03422 1.02795 1.20559 0.93740 0.85885 1.07833 1.20608 0.92467 0.97720 1.12161 1.21369 0.97983 0.91946 1.05147 1.20042 0.84257 0.93608 1.18376 1.16959 0.82316 0.86754 0.76589 1.90785 1.86362 1.14857 1.51372 1.45523 1.04959 1.12279 1.73297 1.21622 0.83726 0.93568 1.02398 1.20735 0.84774 0.93133 0.99331 1.42528 1.02037 1.05834 1.89494 1.19016 0.81159 0.95067 1.42563 0.89038 1.24672 0.95016 0.97655 1.01585 1.69697 0.96955 1.34643 1.56634 0.86542 0.77081 0.86819 0.78094 1.20921 1.21593 1.20176 1.43748 1.04665 1.06572 1.53215 1.22196 1.01267 0.79726 1.04100 0.90809 0.91678 0.89830 0.84050 0.83641 0.76118 0.91244 0.91152 0.94747 0.94789 0.80394 0.92933 0.90572 0.90091 0.88170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.51 9.82 36.00 0.35 -0.16 16 2 C 0.04 0.36 6.87 -81.95 -0.56 -0.21 16 3 C -0.21 -2.05 10.71 -39.98 -0.43 -2.48 16 4 C -0.14 -1.53 10.35 -39.12 -0.40 -1.94 16 5 C -0.05 -0.65 6.88 -81.98 -0.56 -1.21 16 6 C 0.59 8.86 7.77 -12.85 -0.10 8.76 16 7 O -0.55 -9.89 14.83 5.19 0.08 -9.81 16 8 N -0.71 -9.87 5.53 -61.61 -0.34 -10.21 16 9 C 0.11 1.81 5.79 -4.04 -0.02 1.79 16 10 C 0.15 2.78 6.37 -4.04 -0.03 2.75 16 11 N -0.75 -17.98 5.41 -59.91 -0.32 -18.30 16 12 C -0.25 -7.05 10.47 -15.06 -0.16 -7.21 16 13 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 14 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 15 N -0.93 -29.30 13.97 55.49 0.78 -28.52 16 16 Si 0.88 22.25 27.74 -169.99 -4.71 17.54 16 17 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 18 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 19 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 20 N -0.41 -4.71 3.16 -115.62 -0.37 -5.08 16 21 C 0.07 0.64 10.08 59.85 0.60 1.25 16 22 H 0.07 0.37 8.14 -51.94 -0.42 -0.06 16 23 H 0.06 0.33 7.59 -51.93 -0.39 -0.06 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 26 H 0.15 1.29 7.48 -52.49 -0.39 0.90 16 27 H 0.40 4.56 7.41 -40.82 -0.30 4.26 16 28 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.36 8.52 5.53 -40.82 -0.23 8.30 16 33 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.51 7.44 -51.93 -0.39 0.13 16 36 H 0.10 1.12 6.64 -51.93 -0.34 0.78 16 LS Contribution 305.49 15.07 4.60 4.60 Total: -1.00 -34.54 305.49 -6.71 -41.26 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.02 Total: 7.07 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -1.41 Total: 1.45 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: -0.26 Total: -62.11 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.54 -6.71 -41.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123491381.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.197 kcal (2) G-P(sol) polarization free energy of solvation -34.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds