Wall clock time and date at job start Sun Mar 29 2020 22:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99639 * 2 1 4 4 H 1.48496 * 109.47192 * 269.99677 * 3 2 1 5 5 H 1.48499 * 109.47404 * 30.00045 * 3 2 1 6 6 H 1.48504 * 109.46976 * 150.00080 * 3 2 1 7 7 C 1.37869 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99873 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00297 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.47548 * 179.97438 * 9 7 2 11 11 C 1.46957 * 110.99969 * 170.00007 * 10 9 7 12 12 C 1.53054 * 109.35811 * 183.19161 * 11 10 9 13 13 N 1.46955 * 109.36808 * 301.60033 * 12 11 10 14 14 C 1.46901 * 110.99835 * 183.19253 * 13 12 11 15 15 C 1.50701 * 109.46921 * 169.99883 * 14 13 12 16 16 N 1.30260 * 125.61558 * 89.69449 * 15 14 13 17 17 C 1.34477 * 108.69507 * 179.84061 * 16 15 14 18 18 C 1.34328 * 107.67295 * 0.41683 * 17 16 15 19 19 O 1.33962 * 125.61919 * 269.99706 * 15 14 13 20 20 C 1.46958 * 110.87954 * 59.32271 * 13 12 11 21 21 C 1.46955 * 111.00275 * 293.80481 * 10 9 7 22 22 H 0.97005 * 119.99938 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.46687 * 60.00126 * 9 7 2 24 24 H 1.08993 * 109.47360 * 300.00300 * 9 7 2 25 25 H 1.08997 * 109.48667 * 63.22986 * 11 10 9 26 26 H 1.08993 * 109.48792 * 303.15938 * 11 10 9 27 27 H 1.09002 * 109.48344 * 181.63089 * 12 11 10 28 28 H 1.08998 * 109.49062 * 61.57491 * 12 11 10 29 29 H 1.09002 * 109.47401 * 49.99911 * 14 13 12 30 30 H 1.09001 * 109.46874 * 289.99924 * 14 13 12 31 31 H 1.08006 * 126.16057 * 180.16807 * 17 16 15 32 32 H 1.08003 * 126.44626 * 179.77054 * 18 17 16 33 33 H 1.08997 * 109.48699 * 60.64519 * 20 13 12 34 34 H 1.08993 * 109.48441 * 180.71371 * 20 13 12 35 35 H 1.08997 * 109.48797 * 296.78085 * 21 10 9 36 36 H 1.09004 * 109.48478 * 56.84258 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0013 -2.5790 0.0013 11 6 5.4506 -2.6253 -0.2374 12 6 5.9068 -4.0846 -0.3077 13 7 5.5609 -4.7643 0.9484 14 6 6.0506 -6.1493 0.9496 15 6 5.8990 -6.7344 2.3301 16 7 4.8509 -7.3672 2.7749 17 6 5.0821 -7.7448 4.0447 18 6 6.3102 -7.3165 4.3804 19 8 6.8178 -6.6846 3.3038 20 6 4.1115 -4.7179 1.1871 21 6 3.6553 -3.2587 1.2574 22 1 -0.4850 0.8401 -0.0004 23 1 3.8752 -0.6795 0.8895 24 1 3.8745 -0.6807 -0.8904 25 1 5.9697 -2.1208 0.5775 26 1 5.6801 -2.1267 -1.1791 27 1 6.9861 -4.1213 -0.4558 28 1 5.4082 -4.5818 -1.1396 29 1 7.1020 -6.1632 0.6625 30 1 5.4721 -6.7398 0.2391 31 1 4.4012 -8.2903 4.6814 32 1 6.7992 -7.4532 5.3337 33 1 3.5925 -5.2224 0.3721 34 1 3.8820 -5.2165 2.1288 35 1 4.1539 -2.7614 2.0893 36 1 2.5760 -3.2220 1.4054 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141008664.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:45 Heat of formation + Delta-G solvation = 47.448035 kcal Electronic energy + Delta-G solvation = -18433.355403 eV Core-core repulsion = 15533.851073 eV Total energy + Delta-G solvation = -2899.504330 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.37105 -38.86884 -35.50894 -34.70548 -32.53452 -31.05438 -30.43299 -28.68703 -26.55242 -23.98751 -23.25323 -22.57749 -21.25731 -20.96070 -19.27024 -17.55050 -16.95122 -16.70719 -15.66756 -15.38002 -14.82864 -14.62631 -14.40976 -14.27220 -13.63624 -13.52254 -13.21758 -12.79008 -12.37461 -12.16377 -11.96589 -11.49704 -11.32901 -10.95996 -10.81525 -10.64622 -10.60788 -10.40064 -10.08063 -9.82959 -9.25873 -9.04390 -8.55576 -8.33480 -7.36586 -6.03837 -4.01270 1.35347 2.55151 2.68550 3.29519 3.36969 3.39348 3.84520 4.16970 4.43308 4.76387 4.76781 4.91376 5.10348 5.15871 5.28182 5.32690 5.48339 5.63702 5.64865 5.74998 5.78532 5.88063 6.02023 6.09978 6.18491 6.29350 6.49265 6.65726 6.83383 6.96672 6.99767 7.15151 7.60440 7.66497 7.91166 8.05197 8.67044 9.04433 9.57875 11.09249 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.036203 B = 0.004686 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.230565 B = 5973.550449 C = 6311.611203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.080 0.920 9 C 0.162 3.838 10 N -0.529 5.529 11 C 0.054 3.946 12 C 0.063 3.937 13 N -0.539 5.539 14 C 0.147 3.853 15 C 0.209 3.791 16 N -0.481 5.481 17 C -0.044 4.044 18 C -0.081 4.081 19 O -0.197 6.197 20 C 0.056 3.944 21 C 0.068 3.932 22 H 0.263 0.737 23 H -0.011 1.011 24 H 0.024 0.976 25 H 0.032 0.968 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.183 0.817 32 H 0.213 0.787 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.028 0.972 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.003 -13.386 5.298 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.548 4.548 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.254 5.254 11 C -0.075 4.075 12 C -0.064 4.064 13 N -0.265 5.265 14 C 0.018 3.982 15 C 0.001 3.999 16 N -0.211 5.211 17 C -0.182 4.182 18 C -0.152 4.152 19 O -0.082 6.082 20 C -0.071 4.071 21 C -0.060 4.060 22 H 0.073 0.927 23 H 0.007 0.993 24 H 0.042 0.958 25 H 0.050 0.950 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.119 0.881 30 H 0.098 0.902 31 H 0.200 0.800 32 H 0.230 0.770 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.046 0.954 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.345 -13.328 4.917 20.189 hybrid contribution 0.903 1.005 0.724 1.533 sum 15.248 -12.323 5.641 20.400 Atomic orbital electron populations 1.69900 1.06123 1.26815 1.51116 1.24895 0.94728 0.98839 0.94840 0.86863 0.80312 0.84028 0.78563 1.20146 1.21220 1.19288 1.21032 0.88723 0.94730 1.50286 0.90151 1.20156 0.97086 0.84032 0.95103 1.62124 1.10268 1.19196 1.33819 1.22116 0.90349 0.94430 1.00649 1.22170 0.99803 0.95159 0.89288 1.62154 1.16252 1.12349 1.35795 1.20366 1.02720 0.90027 0.85062 1.26194 0.83036 0.97723 0.92929 1.70508 1.25336 1.14411 1.10819 1.23370 0.96837 1.04726 0.93306 1.25020 0.96934 1.01054 0.92151 1.84463 1.43744 1.59411 1.20629 1.22343 0.85319 0.98190 1.01280 1.22024 1.01902 0.91514 0.90571 0.92679 0.99327 0.95756 0.95003 0.90634 0.90658 0.93497 0.88078 0.90244 0.80036 0.77028 0.93526 0.90460 0.95424 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.51 -14.58 9.02 -34.45 -0.31 -14.89 16 8 H 0.08 2.50 7.38 -52.48 -0.39 2.11 16 9 C 0.16 3.99 3.79 -4.98 -0.02 3.97 16 10 N -0.53 -11.24 4.70 -235.92 -1.11 -12.35 16 11 C 0.05 0.91 5.61 -3.76 -0.02 0.89 16 12 C 0.06 0.87 5.61 -3.77 -0.02 0.85 16 13 N -0.54 -7.88 4.70 -235.91 -1.11 -8.99 16 14 C 0.15 1.74 5.59 -4.97 -0.03 1.71 16 15 C 0.21 2.77 7.00 -12.94 -0.09 2.68 16 16 N -0.48 -6.77 10.44 -11.10 -0.12 -6.89 16 17 C -0.04 -0.49 11.89 -17.77 -0.21 -0.70 16 18 C -0.08 -0.79 12.18 29.35 0.36 -0.43 16 19 O -0.20 -2.48 10.78 5.36 0.06 -2.42 16 20 C 0.06 0.95 5.44 -3.77 -0.02 0.93 16 21 C 0.07 1.38 5.43 -3.77 -0.02 1.36 16 22 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 23 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 24 H 0.02 0.59 7.46 -51.93 -0.39 0.21 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 27 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.10 0.94 8.03 -51.93 -0.42 0.52 16 30 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 31 H 0.18 1.46 8.06 -52.48 -0.42 1.03 16 32 H 0.21 1.12 8.06 -52.48 -0.42 0.69 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.32 6.55 -51.93 -0.34 0.98 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 2.09 6.79 -51.93 -0.35 1.74 16 LS Contribution 294.44 15.07 4.44 4.44 Total: -1.00 -32.99 294.44 -7.44 -40.43 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -5.22 Total: -2.49 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -0.48 Total: -1.72 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -1.56 Total: -55.19 kcal Atomic # 8 Polarization: -2.48 SS G_CDS: 0.06 Total: -2.42 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.99 -7.44 -40.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141008664.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.877 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds