Wall clock time and date at job start Sun Mar 29 2020 22:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99639 * 2 1 4 4 H 1.48496 * 109.47192 * 269.99677 * 3 2 1 5 5 H 1.48499 * 109.47404 * 30.00045 * 3 2 1 6 6 H 1.48504 * 109.46976 * 150.00080 * 3 2 1 7 7 C 1.37869 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99873 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00297 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.47548 * 179.97438 * 9 7 2 11 11 C 1.46957 * 110.99969 * 170.00007 * 10 9 7 12 12 C 1.53054 * 109.35811 * 183.19161 * 11 10 9 13 13 N 1.46955 * 109.36808 * 301.60033 * 12 11 10 14 14 C 1.46901 * 110.99835 * 183.19253 * 13 12 11 15 15 C 1.50701 * 109.46921 * 169.99883 * 14 13 12 16 16 N 1.30260 * 125.61558 * 89.69449 * 15 14 13 17 17 C 1.34477 * 108.69507 * 179.84061 * 16 15 14 18 18 C 1.34328 * 107.67295 * 0.41683 * 17 16 15 19 19 O 1.33962 * 125.61919 * 269.99706 * 15 14 13 20 20 C 1.46958 * 110.87954 * 59.32271 * 13 12 11 21 21 C 1.46955 * 111.00275 * 293.80481 * 10 9 7 22 22 H 0.97005 * 119.99938 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.46687 * 60.00126 * 9 7 2 24 24 H 1.08993 * 109.47360 * 300.00300 * 9 7 2 25 25 H 1.08997 * 109.48667 * 63.22986 * 11 10 9 26 26 H 1.08993 * 109.48792 * 303.15938 * 11 10 9 27 27 H 1.09002 * 109.48344 * 181.63089 * 12 11 10 28 28 H 1.08998 * 109.49062 * 61.57491 * 12 11 10 29 29 H 1.09002 * 109.47401 * 49.99911 * 14 13 12 30 30 H 1.09001 * 109.46874 * 289.99924 * 14 13 12 31 31 H 1.08006 * 126.16057 * 180.16807 * 17 16 15 32 32 H 1.08003 * 126.44626 * 179.77054 * 18 17 16 33 33 H 1.08997 * 109.48699 * 60.64519 * 20 13 12 34 34 H 1.08993 * 109.48441 * 180.71371 * 20 13 12 35 35 H 1.08997 * 109.48797 * 296.78085 * 21 10 9 36 36 H 1.09004 * 109.48478 * 56.84258 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0013 -2.5790 0.0013 11 6 5.4506 -2.6253 -0.2374 12 6 5.9068 -4.0846 -0.3077 13 7 5.5609 -4.7643 0.9484 14 6 6.0506 -6.1493 0.9496 15 6 5.8990 -6.7344 2.3301 16 7 4.8509 -7.3672 2.7749 17 6 5.0821 -7.7448 4.0447 18 6 6.3102 -7.3165 4.3804 19 8 6.8178 -6.6846 3.3038 20 6 4.1115 -4.7179 1.1871 21 6 3.6553 -3.2587 1.2574 22 1 -0.4850 0.8401 -0.0004 23 1 3.8752 -0.6795 0.8895 24 1 3.8745 -0.6807 -0.8904 25 1 5.9697 -2.1208 0.5775 26 1 5.6801 -2.1267 -1.1791 27 1 6.9861 -4.1213 -0.4558 28 1 5.4082 -4.5818 -1.1396 29 1 7.1020 -6.1632 0.6625 30 1 5.4721 -6.7398 0.2391 31 1 4.4012 -8.2903 4.6814 32 1 6.7992 -7.4532 5.3337 33 1 3.5925 -5.2224 0.3721 34 1 3.8820 -5.2165 2.1288 35 1 4.1539 -2.7614 2.0893 36 1 2.5760 -3.2220 1.4054 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141008664.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:45 Heat of formation + Delta-G solvation = 19.631245 kcal Electronic energy + Delta-G solvation = -18434.561629 eV Core-core repulsion = 15533.851073 eV Total energy + Delta-G solvation = -2900.710556 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.24071 -40.22614 -36.95873 -35.65466 -34.61317 -32.24048 -31.80246 -30.21866 -27.97408 -25.43241 -24.60709 -23.45219 -22.96273 -22.05662 -20.69926 -18.96391 -18.40669 -17.87305 -16.98219 -16.36128 -16.31414 -15.89313 -15.88354 -15.57690 -15.21524 -15.11827 -14.48722 -14.08881 -13.86158 -13.58746 -13.30079 -13.01355 -12.76167 -12.34476 -12.33582 -12.18823 -12.03890 -11.83782 -11.63592 -11.53263 -11.34903 -10.78352 -9.89426 -9.48320 -9.06057 -8.28783 -6.32718 0.50159 1.34684 1.36568 1.47305 1.68050 1.86907 2.34313 2.86168 3.03822 3.19263 3.22092 3.91800 3.97435 4.13047 4.16157 4.27738 4.31043 4.41291 4.49742 4.52351 4.63538 4.78545 4.84221 4.88341 4.95426 4.97989 5.00507 5.05997 5.15598 5.35397 5.51685 5.80214 5.90120 6.01885 6.32306 6.64377 6.73195 6.79315 7.31075 8.87959 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.036203 B = 0.004686 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.230565 B = 5973.550449 C = 6311.611203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.008 3.992 3 Si 0.950 3.050 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.253 1.253 7 C -0.519 4.519 8 H 0.035 0.965 9 C 0.172 3.828 10 N -0.544 5.544 11 C 0.049 3.951 12 C 0.069 3.931 13 N -0.545 5.545 14 C 0.150 3.850 15 C 0.189 3.811 16 N -0.513 5.513 17 C -0.070 4.070 18 C -0.065 4.065 19 O -0.208 6.208 20 C 0.075 3.925 21 C 0.074 3.926 22 H 0.267 0.733 23 H -0.016 1.016 24 H 0.035 0.965 25 H 0.030 0.970 26 H 0.090 0.910 27 H 0.117 0.883 28 H 0.048 0.952 29 H 0.134 0.866 30 H 0.085 0.915 31 H 0.204 0.796 32 H 0.257 0.743 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.020 0.980 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.149 -13.376 5.461 23.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.177 1.177 7 C -0.557 4.557 8 H 0.053 0.947 9 C 0.045 3.955 10 N -0.269 5.269 11 C -0.079 4.079 12 C -0.058 4.058 13 N -0.271 5.271 14 C 0.022 3.978 15 C -0.019 4.019 16 N -0.244 5.244 17 C -0.207 4.207 18 C -0.135 4.135 19 O -0.093 6.093 20 C -0.053 4.053 21 C -0.054 4.054 22 H 0.076 0.924 23 H 0.002 0.998 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.108 0.892 27 H 0.135 0.865 28 H 0.067 0.933 29 H 0.152 0.848 30 H 0.103 0.897 31 H 0.221 0.779 32 H 0.272 0.728 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.038 0.962 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 17.520 -13.346 5.076 22.602 hybrid contribution -0.112 0.874 0.746 1.154 sum 17.408 -12.473 5.822 22.192 Atomic orbital electron populations 1.70059 1.08177 1.28152 1.52532 1.25863 0.95614 1.03212 0.94242 0.85676 0.79174 0.78424 0.79417 1.18584 1.20758 1.17737 1.21257 0.91133 0.93231 1.50067 0.94651 1.19921 0.94230 0.86274 0.95050 1.62036 1.13578 1.17140 1.34113 1.22296 0.87176 0.97218 1.01192 1.22209 1.02163 0.92630 0.88819 1.62090 1.13946 1.14605 1.36504 1.20491 1.04520 0.88039 0.84757 1.26392 0.83254 0.98551 0.93658 1.70472 1.26238 1.15160 1.12516 1.23861 0.98234 1.05789 0.92849 1.25883 0.96425 0.98629 0.92544 1.84463 1.43883 1.59769 1.21214 1.21997 0.87382 0.95183 1.00762 1.21869 0.99635 0.93790 0.90128 0.92397 0.99816 0.94747 0.95126 0.89202 0.86500 0.93346 0.84784 0.89739 0.77906 0.72755 0.94457 0.90916 0.96220 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.26 13.96 21.45 0.30 -59.96 16 2 C 0.01 0.47 5.47 84.65 0.46 0.93 16 3 Si 0.95 44.59 27.47 68.60 1.88 46.47 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 7 C -0.52 -30.76 9.02 25.60 0.23 -30.53 16 8 H 0.04 2.35 7.38 -2.91 -0.02 2.33 16 9 C 0.17 8.47 3.79 85.55 0.32 8.80 16 10 N -0.54 -23.15 4.70 -900.30 -4.23 -27.38 16 11 C 0.05 1.58 5.61 86.31 0.48 2.06 16 12 C 0.07 1.69 5.61 86.31 0.48 2.18 16 13 N -0.54 -14.90 4.70 -900.29 -4.23 -19.13 16 14 C 0.15 3.20 5.59 85.56 0.48 3.67 16 15 C 0.19 4.73 7.00 88.34 0.62 5.35 16 16 N -0.51 -14.10 10.44 -303.83 -3.17 -17.27 16 17 C -0.07 -1.44 11.89 83.39 0.99 -0.45 16 18 C -0.06 -1.10 12.18 66.93 0.81 -0.29 16 19 O -0.21 -4.77 10.78 -3.72 -0.04 -4.81 16 20 C 0.08 2.56 5.44 86.31 0.47 3.03 16 21 C 0.07 3.11 5.43 86.31 0.47 3.58 16 22 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 23 H -0.02 -0.79 7.18 -2.38 -0.02 -0.81 16 24 H 0.03 1.62 7.46 -2.39 -0.02 1.61 16 25 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.09 2.61 8.07 -2.39 -0.02 2.59 16 27 H 0.12 1.99 8.07 -2.39 -0.02 1.97 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.13 1.95 8.03 -2.39 -0.02 1.94 16 30 H 0.08 1.73 8.12 -2.39 -0.02 1.71 16 31 H 0.20 2.97 8.06 -2.91 -0.02 2.94 16 32 H 0.26 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 2.54 6.55 -2.39 -0.02 2.52 16 35 H 0.02 0.83 8.14 -2.39 -0.02 0.82 16 36 H 0.06 2.70 6.79 -2.39 -0.02 2.68 16 Total: -1.00 -74.40 294.44 -2.66 -77.06 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.00 Total: 6.69 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 5.83 Total: -1.67 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -11.34 Total: -123.74 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.04 Total: -4.81 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.47 kcal Total: -74.40 -2.66 -77.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141008664.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.692 kcal (2) G-P(sol) polarization free energy of solvation -74.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds