Wall clock time and date at job start Sun Mar 29 2020 22:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35359 * 126.38738 * 2 1 4 4 C 1.41501 * 105.50659 * 179.90119 * 3 2 1 5 5 C 1.47706 * 126.52153 * 180.10309 * 4 3 2 6 6 O 1.21581 * 119.99940 * 0.29459 * 5 4 3 7 7 N 1.34772 * 120.00316 * 180.29128 * 5 4 3 8 8 C 1.46501 * 120.00448 * 180.02562 * 7 5 4 9 9 C 1.50698 * 109.47409 * 180.02562 * 8 7 5 10 10 H 1.08001 * 119.99618 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00085 * 179.97438 * 9 8 7 12 12 N 1.31521 * 120.00154 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 120.00221 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46847 * 60.00001 * 13 11 9 15 15 H 1.48499 * 109.46987 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46954 * 300.00416 * 13 11 9 17 17 N 1.31814 * 106.96157 * 0.36784 * 4 3 2 18 18 N 1.28474 * 110.06938 * 359.76865 * 17 4 3 19 19 C 1.46495 * 124.88084 * 180.02562 * 18 17 4 20 20 C 1.53002 * 109.47120 * 299.97875 * 19 18 17 21 21 C 1.52998 * 109.47020 * 59.97863 * 19 18 17 22 22 H 1.09002 * 109.47152 * 269.68487 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.68588 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.68569 * 1 2 3 25 25 H 1.08003 * 127.24747 * 0.02562 * 3 2 1 26 26 H 0.97000 * 119.99977 * 359.97438 * 7 5 4 27 27 H 1.09008 * 109.46573 * 299.99922 * 8 7 5 28 28 H 1.08999 * 109.47516 * 59.99586 * 8 7 5 29 29 H 0.96995 * 119.99937 * 180.02562 * 12 11 9 30 30 H 1.09004 * 109.47386 * 179.97438 * 19 18 17 31 31 H 1.09000 * 109.47253 * 60.00155 * 20 19 18 32 32 H 1.09010 * 109.47145 * 179.97438 * 20 19 18 33 33 H 1.08996 * 109.47512 * 300.00078 * 20 19 18 34 34 H 1.09001 * 109.47194 * 60.00361 * 21 19 18 35 35 H 1.09010 * 109.47063 * 180.02562 * 21 19 18 36 36 H 1.09000 * 109.47244 * 299.99779 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5853 0.0024 5 6 4.8765 1.3811 0.0054 6 8 4.8214 2.5956 0.0115 7 7 6.0730 0.7609 0.0015 8 6 7.3073 1.5501 0.0051 9 6 8.4959 0.6238 -0.0011 10 1 8.3469 -0.4458 -0.0067 11 6 9.7736 1.1418 0.0004 12 7 9.9551 2.4445 0.0077 13 14 11.2471 -0.0064 -0.0066 14 1 11.2062 -0.8568 -1.2232 15 1 12.4981 0.7937 -0.0030 16 1 11.2082 -0.8689 1.2017 17 7 3.5420 -0.7297 -0.0045 18 7 2.3080 -1.0871 -0.0060 19 6 1.8376 -2.4744 -0.0125 20 6 2.3562 -3.1829 -1.2656 21 6 2.3576 -3.1952 1.2328 22 1 -0.3633 -0.0057 1.0277 23 1 -0.3633 -0.8872 -0.5187 24 1 -0.3633 0.8928 -0.5090 25 1 2.0057 2.1259 0.0004 26 1 6.1170 -0.2081 -0.0030 27 1 7.3360 2.1835 -0.8816 28 1 7.3370 2.1741 0.8983 29 1 10.8540 2.8089 0.0083 30 1 0.7476 -2.4886 -0.0119 31 1 3.4461 -3.1688 -1.2662 32 1 2.0065 -4.2153 -1.2703 33 1 1.9858 -2.6694 -2.1529 34 1 1.9881 -2.6905 2.1255 35 1 2.0080 -4.2276 1.2277 36 1 3.4475 -3.1811 1.2323 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156059793.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:15 Heat of formation + Delta-G solvation = 24.238083 kcal Electronic energy + Delta-G solvation = -18066.707160 eV Core-core repulsion = 15166.196371 eV Total energy + Delta-G solvation = -2900.510789 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.54698 -38.37953 -35.79465 -34.09482 -32.79681 -32.13928 -30.41383 -27.59944 -27.49338 -26.80952 -24.31387 -22.26864 -21.28835 -20.38008 -18.85103 -17.26285 -16.55369 -15.98150 -15.48246 -14.98639 -14.96320 -14.16386 -14.09229 -13.78706 -13.45448 -13.24395 -13.04536 -12.89997 -12.48028 -12.46717 -12.07268 -11.84967 -11.77786 -11.55503 -11.45015 -10.94718 -10.81821 -10.51002 -10.26309 -9.33888 -9.20138 -8.88163 -8.74418 -8.65349 -7.76295 -6.09439 -4.15635 1.94187 2.37635 2.48398 3.30769 3.34830 3.36957 4.11325 4.14462 4.24226 4.43828 4.57146 4.58208 4.68032 4.86659 5.08934 5.23547 5.26492 5.28775 5.31239 5.43988 5.44543 5.62805 5.75979 5.87219 5.88963 5.96084 6.09081 6.66669 6.94385 7.39271 7.52432 7.59964 7.75216 8.03979 8.16445 8.75178 8.86873 9.18986 9.50437 11.00924 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.027274 B = 0.004852 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.384893 B = 5768.954589 C = 6598.978808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.002 4.002 3 C -0.182 4.182 4 C -0.002 4.002 5 C 0.584 3.416 6 O -0.550 6.550 7 N -0.696 5.696 8 C 0.249 3.751 9 C -0.541 4.541 10 H 0.063 0.937 11 C 0.064 3.936 12 N -0.887 5.887 13 Si 0.904 3.096 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 N -0.259 5.259 18 N -0.281 5.281 19 C 0.144 3.856 20 C -0.164 4.164 21 C -0.163 4.163 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.084 0.916 25 H 0.158 0.842 26 H 0.396 0.604 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.266 0.734 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.018 -12.085 -0.053 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.125 4.125 3 C -0.210 4.210 4 C -0.163 4.163 5 C 0.366 3.634 6 O -0.428 6.428 7 N -0.344 5.344 8 C 0.128 3.872 9 C -0.579 4.579 10 H 0.081 0.919 11 C -0.140 4.140 12 N -0.524 5.524 13 Si 0.731 3.269 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.201 1.201 17 N -0.093 5.093 18 N -0.071 5.071 19 C 0.043 3.957 20 C -0.221 4.221 21 C -0.221 4.221 22 H 0.093 0.907 23 H 0.084 0.916 24 H 0.103 0.897 25 H 0.176 0.824 26 H 0.230 0.770 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.241 -12.156 -0.055 22.759 hybrid contribution 0.392 -0.309 0.000 0.499 sum -18.849 -12.465 -0.055 22.598 Atomic orbital electron populations 1.20300 0.87167 1.03459 1.02910 1.21317 0.95122 0.86997 1.09097 1.21512 0.90866 0.99310 1.09305 1.22307 0.95722 0.89535 1.08755 1.16988 0.81946 0.86469 0.77952 1.90742 1.86886 1.13002 1.52144 1.46354 1.06242 1.10914 1.70874 1.19163 0.78642 0.91485 0.97908 1.21196 0.90613 0.93096 1.53037 0.91909 1.24938 0.99011 0.95251 0.94763 1.69970 1.22529 1.10874 1.49046 0.86473 0.81324 0.80412 0.78678 1.20086 1.21091 1.20089 1.73494 1.01532 1.15034 1.19276 1.45620 1.02885 1.06685 1.51880 1.21544 0.99420 0.76698 0.98010 1.22158 1.03706 1.00351 0.95921 1.22153 1.03678 1.00261 0.95999 0.90671 0.91572 0.89732 0.82416 0.77012 0.95291 0.95291 0.92445 0.87760 0.90471 0.90468 0.91923 0.91920 0.90471 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 9.92 36.01 0.36 -0.26 16 2 C 0.00 -0.02 6.92 -82.21 -0.57 -0.59 16 3 C -0.18 -2.93 10.73 -39.37 -0.42 -3.35 16 4 C 0.00 -0.04 7.13 -82.77 -0.59 -0.63 16 5 C 0.58 13.56 7.82 -12.39 -0.10 13.46 16 6 O -0.55 -14.48 16.93 5.29 0.09 -14.39 16 7 N -0.70 -16.58 5.55 -62.47 -0.35 -16.93 16 8 C 0.25 6.97 5.43 -5.19 -0.03 6.94 16 9 C -0.54 -15.34 9.28 -34.44 -0.32 -15.66 16 10 H 0.06 1.68 7.60 -52.49 -0.40 1.28 16 11 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 12 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 13 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 N -0.26 -4.36 11.33 33.42 0.38 -3.98 16 18 N -0.28 -3.69 3.04 -50.66 -0.15 -3.85 16 19 C 0.14 1.27 3.55 -67.93 -0.24 1.03 16 20 C -0.16 -1.35 9.37 37.16 0.35 -1.01 16 21 C -0.16 -1.35 9.37 37.16 0.35 -1.00 16 22 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.07 0.38 7.03 -51.93 -0.36 0.01 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.16 2.38 8.06 -52.48 -0.42 1.95 16 26 H 0.40 8.63 8.05 -40.82 -0.33 8.30 16 27 H 0.03 0.88 8.14 -51.92 -0.42 0.46 16 28 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.10 0.63 6.55 -51.93 -0.34 0.29 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 312.96 15.07 4.72 4.72 Total: -1.00 -34.34 312.96 -6.13 -40.47 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.22 Total: 2.89 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.31 Total: 0.66 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.61 Total: -50.76 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.09 Total: -14.39 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.34 -6.13 -40.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156059793.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.711 kcal (2) G-P(sol) polarization free energy of solvation -34.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds