Wall clock time and date at job start Sun Mar 29 2020 23:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36026 * 117.00171 * 2 1 4 4 C 1.38507 * 120.87286 * 359.71780 * 3 2 1 5 5 N 1.32590 * 119.12982 * 179.69672 * 4 3 2 6 6 C 1.31720 * 121.04517 * 0.61771 * 5 4 3 7 7 C 1.50698 * 119.03104 * 179.68254 * 6 5 4 8 8 N 1.31822 * 121.94156 * 359.65035 * 6 5 4 9 9 C 1.32867 * 120.74135 * 0.03200 * 8 6 5 10 10 N 1.38779 * 120.54859 * 180.02562 * 9 8 6 11 11 C 1.46490 * 120.00562 * 359.97438 * 10 9 8 12 12 C 1.53002 * 109.47518 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47258 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.46855 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99872 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99892 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00293 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00030 * 359.97438 * 16 14 13 19 19 H 1.48509 * 109.47292 * 90.00085 * 18 16 14 20 20 H 1.48499 * 109.47194 * 210.00056 * 18 16 14 21 21 H 1.48497 * 109.47190 * 330.00286 * 18 16 14 22 22 H 1.09002 * 109.47382 * 300.00216 * 1 2 3 23 23 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46926 * 60.00324 * 1 2 3 25 25 H 1.07997 * 120.44107 * 359.97438 * 4 3 2 26 26 H 1.09002 * 109.47374 * 269.97548 * 7 6 5 27 27 H 1.09004 * 109.47089 * 29.97525 * 7 6 5 28 28 H 1.09002 * 109.47653 * 149.97227 * 7 6 5 29 29 H 0.97005 * 119.99001 * 179.97438 * 10 9 8 30 30 H 1.09005 * 109.46777 * 299.99814 * 11 10 9 31 31 H 1.08996 * 109.47648 * 59.99490 * 11 10 9 32 32 H 1.09002 * 109.46710 * 300.00180 * 12 11 10 33 33 H 1.09004 * 109.47205 * 59.99441 * 12 11 10 34 34 H 1.08997 * 109.46905 * 299.99576 * 13 12 11 35 35 H 1.08993 * 109.47392 * 60.00175 * 13 12 11 36 36 H 0.96992 * 120.00704 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 1.3101 2.3850 -0.0059 5 7 1.9477 3.5475 0.0005 6 6 3.2638 3.6004 0.0000 7 6 3.9416 4.9464 0.0001 8 7 4.0056 2.5107 0.0001 9 6 3.4438 1.3067 0.0001 10 7 4.2286 0.1621 0.0007 11 6 5.6891 0.2753 0.0009 12 6 6.3091 -1.1235 0.0023 13 6 7.8345 -1.0052 0.0019 14 6 8.4451 -2.3830 0.0026 15 1 7.8088 -3.2557 0.0037 16 6 9.8161 -2.5294 0.0029 17 7 10.3491 -3.7318 0.0040 18 14 10.9166 -1.0201 0.0016 19 1 11.2081 -0.6188 1.4015 20 1 12.1880 -1.3351 -0.6980 21 1 10.2286 0.0936 -0.6994 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 0.2306 2.3532 -0.0109 26 1 4.1051 5.2710 -1.0276 27 1 3.3101 5.6712 0.5139 28 1 4.8999 4.8707 0.5140 29 1 3.8098 -0.7129 0.0011 30 1 6.0117 0.8152 -0.8893 31 1 6.0116 0.8161 0.8906 32 1 5.9864 -1.6630 0.8927 33 1 5.9867 -1.6648 -0.8872 34 1 8.1568 -0.4659 -0.8888 35 1 8.1573 -0.4639 0.8911 36 1 11.3135 -3.8348 0.0039 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427958.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:04 Heat of formation + Delta-G solvation = -21.981633 kcal Electronic energy + Delta-G solvation = -17716.343810 eV Core-core repulsion = 14813.828784 eV Total energy + Delta-G solvation = -2902.515026 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.20668 -39.40438 -38.07942 -35.75592 -34.18787 -33.62018 -32.09788 -29.64943 -28.50989 -27.79941 -25.19480 -23.51423 -23.47813 -22.00047 -19.32603 -19.04005 -18.74684 -18.10427 -17.16371 -16.41443 -16.31399 -16.10843 -15.63015 -15.59989 -14.88514 -14.62483 -14.33782 -14.22125 -13.77047 -13.43249 -13.15269 -12.91604 -12.82995 -12.74181 -12.28490 -12.18165 -12.04623 -11.82969 -11.72356 -11.53111 -11.33390 -10.76217 -10.37799 -10.17036 -8.71258 -8.29360 -6.33947 0.04065 0.26085 1.37980 1.39544 1.51827 2.02955 2.18661 2.37175 2.79516 3.06350 3.14078 3.27117 3.76124 3.86526 4.10405 4.20387 4.35216 4.41360 4.46564 4.51603 4.76519 4.78358 4.79603 4.89959 4.92340 5.00976 5.02350 5.39138 5.45167 5.54902 5.63441 5.70248 5.85334 6.26968 6.33571 6.59559 6.73974 7.28606 7.31025 8.87348 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.027396 B = 0.004307 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.795348 B = 6499.761103 C = 7485.201873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C -0.051 4.051 4 C 0.091 3.909 5 N -0.546 5.546 6 C 0.310 3.690 7 C -0.077 4.077 8 N -0.569 5.569 9 C 0.412 3.588 10 N -0.699 5.699 11 C 0.143 3.857 12 C -0.103 4.103 13 C -0.008 4.008 14 C -0.534 4.534 15 H 0.033 0.967 16 C 0.004 3.996 17 N -0.952 5.952 18 Si 0.950 3.050 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.245 1.245 22 H 0.068 0.932 23 H 0.120 0.880 24 H 0.068 0.932 25 H 0.198 0.802 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.419 0.581 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.023 0.977 35 H 0.022 0.978 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.644 15.283 -0.053 25.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.238 6.238 3 C -0.106 4.106 4 C -0.069 4.069 5 N -0.267 5.267 6 C 0.042 3.958 7 C -0.135 4.135 8 N -0.297 5.297 9 C 0.165 3.835 10 N -0.334 5.334 11 C 0.020 3.980 12 C -0.141 4.141 13 C -0.046 4.046 14 C -0.572 4.572 15 H 0.051 0.949 16 C -0.193 4.193 17 N -0.593 5.593 18 Si 0.774 3.226 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.168 1.168 22 H 0.086 0.914 23 H 0.138 0.862 24 H 0.087 0.913 25 H 0.215 0.785 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.104 0.896 29 H 0.257 0.743 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.814 15.854 -0.049 25.376 hybrid contribution 0.033 -1.287 0.008 1.287 sum -19.780 14.567 -0.041 24.566 Atomic orbital electron populations 1.23394 0.75877 1.05934 1.02477 1.86026 1.23775 1.24398 1.89646 1.20075 0.91789 0.88334 1.10364 1.23475 1.01877 0.85700 0.95894 1.68183 1.10496 1.28549 1.19443 1.23464 0.86513 0.94850 0.90931 1.20583 1.00396 0.87909 1.04599 1.67930 1.40950 0.97167 1.23629 1.18399 0.85873 0.87950 0.91279 1.44627 1.05841 1.05163 1.77739 1.21261 0.77910 0.97338 1.01520 1.21495 0.96007 0.94932 1.01654 1.19426 0.93015 0.95168 0.96983 1.21473 0.92193 0.93013 1.50491 0.94862 1.26021 0.99989 0.99218 0.94052 1.70063 1.12145 1.24410 1.52646 0.85652 0.77783 0.79926 0.79284 1.19107 1.21018 1.16821 0.91350 0.86218 0.91330 0.78542 0.88742 0.88381 0.89620 0.74280 0.92180 0.92118 0.92302 0.92322 0.95828 0.95940 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.84 113.37 1.12 1.31 16 2 O -0.33 -6.95 9.86 -93.85 -0.93 -7.87 16 3 C -0.05 -1.26 6.75 22.77 0.15 -1.11 16 4 C 0.09 1.97 10.30 84.64 0.87 2.85 16 5 N -0.55 -13.64 10.32 -187.78 -1.94 -15.58 16 6 C 0.31 8.15 7.64 138.76 1.06 9.21 16 7 C -0.08 -1.41 10.31 71.24 0.73 -0.67 16 8 N -0.57 -17.29 9.60 -185.01 -1.78 -19.06 16 9 C 0.41 12.23 7.53 133.22 1.00 13.24 16 10 N -0.70 -20.77 5.70 -344.13 -1.96 -22.73 16 11 C 0.14 4.70 5.73 86.38 0.50 5.19 16 12 C -0.10 -3.91 5.27 30.59 0.16 -3.75 16 13 C -0.01 -0.37 4.04 29.85 0.12 -0.25 16 14 C -0.53 -30.84 9.66 25.60 0.25 -30.59 16 15 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 16 C 0.00 0.23 5.47 84.65 0.46 0.69 16 17 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 18 Si 0.95 44.35 27.47 68.60 1.88 46.23 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.24 -10.58 6.54 99.48 0.65 -9.93 16 22 H 0.07 0.59 7.73 -2.39 -0.02 0.57 16 23 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.07 0.58 7.70 -2.38 -0.02 0.57 16 25 H 0.20 2.65 6.45 -2.91 -0.02 2.64 16 26 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.42 11.48 7.92 -92.70 -0.73 10.75 16 30 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 35 H 0.02 1.00 7.57 -2.39 -0.02 0.99 16 36 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -71.14 306.21 2.30 -68.84 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.29 Total: 13.81 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 6.43 Total: -3.88 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -5.38 Total: -117.14 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.93 Total: -7.87 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.23 kcal Total: -71.14 2.30 -68.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427958.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.859 kcal (2) G-P(sol) polarization free energy of solvation -71.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds