Wall clock time and date at job start Sun Mar 29 2020 23:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35311 * 126.03970 * 2 1 4 4 N 1.34950 * 107.74310 * 180.27065 * 3 2 1 5 5 C 1.46502 * 126.03519 * 179.74474 * 4 3 2 6 6 N 1.40076 * 107.92725 * 359.74886 * 4 3 2 7 7 C 1.30840 * 108.20921 * 359.97438 * 6 4 3 8 8 C 1.50696 * 125.90312 * 179.97438 * 7 6 4 9 9 N 1.46898 * 109.47016 * 90.02303 * 8 7 6 10 10 C 1.47480 * 111.00405 * 265.97353 * 9 8 7 11 11 C 1.53515 * 87.93275 * 221.29694 * 10 9 8 12 12 O 1.42900 * 114.17050 * 272.37588 * 11 10 9 13 13 C 1.50702 * 114.17087 * 139.66692 * 11 10 9 14 14 H 1.07998 * 120.00251 * 266.15920 * 13 11 10 15 15 C 1.37876 * 119.99896 * 86.16065 * 13 11 10 16 16 N 1.31510 * 120.00203 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00117 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47393 * 59.99205 * 17 15 13 19 19 H 1.48493 * 109.47048 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46835 * 299.99500 * 17 15 13 21 21 C 1.47486 * 110.99952 * 169.99989 * 9 8 7 22 22 H 1.09000 * 109.47447 * 270.14654 * 1 2 3 23 23 H 1.09002 * 109.47382 * 30.14427 * 1 2 3 24 24 H 1.09006 * 109.47040 * 150.14709 * 1 2 3 25 25 H 1.08001 * 126.13182 * 0.02562 * 3 2 1 26 26 H 1.09001 * 109.47551 * 270.02514 * 5 4 3 27 27 H 1.09001 * 109.47408 * 30.02560 * 5 4 3 28 28 H 1.09002 * 109.47177 * 150.02776 * 5 4 3 29 29 H 1.09001 * 109.47148 * 330.02429 * 8 7 6 30 30 H 1.09005 * 109.47175 * 210.02638 * 8 7 6 31 31 H 1.09005 * 113.47310 * 336.06042 * 10 9 8 32 32 H 1.08990 * 113.48150 * 106.52863 * 10 9 8 33 33 H 0.96704 * 113.99649 * 273.83626 * 12 11 10 34 34 H 0.97002 * 120.00886 * 179.97438 * 16 15 13 35 35 H 1.09005 * 113.47586 * 253.47470 * 21 9 8 36 36 H 1.08996 * 113.47223 * 23.93957 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0941 0.0000 4 7 3.5843 0.6705 -0.0061 5 6 4.7745 1.5247 -0.0135 6 7 3.5753 -0.7302 -0.0041 7 6 2.3299 -1.1311 0.0035 8 6 1.8626 -2.5638 0.0076 9 7 1.7183 -3.0278 1.3938 10 6 2.9436 -3.7073 1.8541 11 6 2.0440 -4.7515 2.5301 12 8 1.6450 -4.4079 3.8586 13 6 2.5399 -6.1688 2.4022 14 1 2.1855 -6.7943 1.5963 15 6 3.4462 -6.6670 3.3140 16 7 3.8782 -5.9053 4.2952 17 14 4.0615 -8.4236 3.1551 18 1 4.7399 -8.5938 1.8452 19 1 5.0204 -8.7132 4.2513 20 1 2.9125 -9.3603 3.2428 21 6 1.0402 -4.3365 1.4452 22 1 -0.3634 0.0026 1.0276 23 1 -0.3634 0.8887 -0.5161 24 1 -0.3633 -0.8914 -0.5116 25 1 1.9724 2.1223 0.0004 26 1 5.0641 1.7355 -1.0430 27 1 4.5536 2.4602 0.5005 28 1 5.5915 1.0141 0.4964 29 1 2.5933 -3.1857 -0.5095 30 1 0.9011 -2.6338 -0.5011 31 1 3.5459 -4.1139 1.0417 32 1 3.5289 -3.1169 2.5590 33 1 2.2791 -4.6705 4.5400 34 1 4.5155 -6.2558 4.9370 35 1 0.0124 -4.2793 1.8036 36 1 1.1346 -4.9109 0.5237 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169628444.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:17 Heat of formation + Delta-G solvation = 42.765760 kcal Electronic energy + Delta-G solvation = -18521.248697 eV Core-core repulsion = 15621.541328 eV Total energy + Delta-G solvation = -2899.707369 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.17924 -40.80850 -36.44356 -34.75129 -34.09711 -32.60479 -31.01922 -28.78885 -27.71334 -26.69374 -25.74349 -23.93062 -21.60896 -20.50539 -20.43861 -19.19086 -17.48336 -17.11295 -16.89632 -16.30962 -16.09764 -15.72582 -15.35923 -14.92681 -14.25759 -14.19374 -13.92830 -13.83167 -13.50029 -13.35840 -13.18992 -13.02619 -12.86286 -12.66507 -12.56448 -12.34958 -12.19358 -11.88253 -11.36258 -11.19377 -10.67037 -10.26837 -10.03872 -9.68553 -9.14889 -8.25169 -6.43450 0.97147 1.43526 1.44922 1.53448 1.71405 1.78939 2.37750 2.95674 3.31824 3.62990 3.80749 4.04781 4.08893 4.19507 4.31484 4.41833 4.42598 4.48790 4.53626 4.63941 4.66149 4.68986 4.90971 5.00769 5.03748 5.12690 5.23488 5.36956 5.38125 5.45780 5.74210 5.74919 5.95543 6.26538 6.28855 6.62948 6.81786 7.29733 7.54301 8.80296 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.031675 B = 0.005291 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.766070 B = 5291.106701 C = 5694.619912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.248 4.248 3 C 0.055 3.945 4 N -0.384 5.384 5 C 0.096 3.904 6 N -0.341 5.341 7 C 0.075 3.925 8 C 0.097 3.903 9 N -0.465 5.465 10 C 0.000 4.000 11 C 0.220 3.780 12 O -0.583 6.583 13 C -0.557 4.557 14 H 0.071 0.929 15 C 0.024 3.976 16 N -0.923 5.923 17 Si 0.972 3.028 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.267 1.267 21 C 0.017 3.983 22 H 0.053 0.947 23 H 0.084 0.916 24 H 0.059 0.941 25 H 0.217 0.783 26 H 0.090 0.910 27 H 0.119 0.881 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.108 0.892 31 H 0.054 0.946 32 H 0.032 0.968 33 H 0.383 0.617 34 H 0.274 0.726 35 H 0.079 0.921 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.127 13.578 -9.728 16.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.260 4.260 3 C -0.091 4.091 4 N -0.167 5.167 5 C -0.044 4.044 6 N -0.165 5.165 7 C -0.091 4.091 8 C -0.032 4.032 9 N -0.188 5.188 10 C -0.130 4.130 11 C 0.179 3.821 12 O -0.394 6.394 13 C -0.595 4.595 14 H 0.089 0.911 15 C -0.176 4.176 16 N -0.565 5.565 17 Si 0.796 3.204 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.192 1.192 21 C -0.111 4.111 22 H 0.072 0.928 23 H 0.103 0.897 24 H 0.078 0.922 25 H 0.233 0.767 26 H 0.108 0.892 27 H 0.137 0.863 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.126 0.874 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.237 0.763 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.419 14.190 -9.562 17.170 hybrid contribution 0.819 -1.404 0.014 1.625 sum -0.600 12.786 -9.548 15.969 Atomic orbital electron populations 1.20015 0.87777 1.02758 1.01552 1.20392 0.98517 0.91006 1.16082 1.22922 0.83366 1.01217 1.01584 1.48738 1.07329 1.03875 1.56717 1.22152 0.84356 0.93300 1.04578 1.77248 1.21601 0.90945 1.26666 1.22138 0.90713 0.96676 0.99574 1.20997 1.01156 0.89262 0.91833 1.68814 1.10391 1.21853 1.17742 1.24427 0.93691 0.96180 0.98677 1.19736 0.90556 0.90881 0.80937 1.86006 1.51535 1.84133 1.17773 1.21845 1.25810 0.98514 1.13315 0.91091 1.25892 0.95115 1.02350 0.94218 1.69386 1.32842 1.38200 1.16048 0.85397 0.78168 0.78876 0.77929 1.19478 1.20640 1.19229 1.23984 0.99523 0.89225 0.98418 0.92802 0.89725 0.92246 0.76685 0.89196 0.86251 0.90451 0.93708 0.87419 0.92796 0.94899 0.76264 0.91611 0.90218 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.49 10.18 71.23 0.72 -0.76 16 2 C -0.25 -7.39 6.10 -20.14 -0.12 -7.51 16 3 C 0.06 1.33 11.40 83.54 0.95 2.29 16 4 N -0.38 -10.79 4.01 -369.56 -1.48 -12.27 16 5 C 0.10 1.63 11.47 127.77 1.47 3.10 16 6 N -0.34 -13.01 12.57 -47.38 -0.60 -13.61 16 7 C 0.07 2.75 6.80 43.10 0.29 3.05 16 8 C 0.10 3.67 5.19 85.56 0.44 4.11 16 9 N -0.47 -20.83 6.32 -932.75 -5.89 -26.72 16 10 C 0.00 0.01 7.13 83.58 0.60 0.60 16 11 C 0.22 11.76 1.57 -11.19 -0.02 11.74 16 12 O -0.58 -33.65 13.54 -148.98 -2.02 -35.67 16 13 C -0.56 -30.56 8.69 25.60 0.22 -30.34 16 14 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 15 C 0.02 1.27 5.40 84.66 0.46 1.73 16 16 N -0.92 -51.91 11.02 21.45 0.24 -51.67 16 17 Si 0.97 42.43 29.54 68.60 2.03 44.46 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 21 C 0.02 0.76 7.10 83.58 0.59 1.35 16 22 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.06 1.39 7.25 -2.38 -0.02 1.37 16 25 H 0.22 2.88 8.06 -2.91 -0.02 2.85 16 26 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.04 1.74 7.30 -2.39 -0.02 1.72 16 30 H 0.11 3.41 7.18 -2.38 -0.02 3.39 16 31 H 0.05 2.76 7.37 -2.38 -0.02 2.75 16 32 H 0.03 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.38 22.66 6.34 -74.05 -0.47 22.19 16 34 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 35 H 0.08 3.42 8.14 -2.38 -0.02 3.40 16 36 H 0.08 3.36 7.87 -2.39 -0.02 3.34 16 Total: -1.00 -70.51 303.82 -1.51 -72.02 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: 0.61 Total: 34.12 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 5.61 Total: -10.65 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -7.73 Total: -104.27 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -2.02 Total: -35.67 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -70.51 -1.51 -72.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169628444.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.786 kcal (2) G-P(sol) polarization free energy of solvation -70.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds