Wall clock time and date at job start Sun Mar 29 2020 23:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30443 * 117.27386 * 2 1 4 4 C 1.34335 * 121.80116 * 180.02562 * 3 2 1 5 5 O 1.21418 * 121.55712 * 179.97438 * 4 3 2 6 6 C 1.51863 * 116.89169 * 359.97438 * 4 3 2 7 7 H 1.08996 * 108.20757 * 121.44808 * 6 4 3 8 8 N 1.46898 * 108.21039 * 238.35380 * 6 4 3 9 9 C 1.46895 * 111.00093 * 272.27597 * 8 6 4 10 10 H 1.09001 * 109.46724 * 34.24964 * 9 8 6 11 11 C 1.52993 * 109.47744 * 274.24444 * 9 8 6 12 12 C 1.53001 * 109.46857 * 154.23974 * 9 8 6 13 13 C 1.52994 * 109.47824 * 295.00906 * 12 9 8 14 14 C 1.50699 * 109.47448 * 179.97438 * 13 12 9 15 15 H 1.07998 * 119.99777 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99912 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00390 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99805 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47237 * 59.99883 * 18 16 14 20 20 H 1.48501 * 109.47095 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47006 * 299.99866 * 18 16 14 22 22 C 1.51766 * 115.81664 * 0.02562 * 6 4 3 23 23 N 1.30154 * 117.42795 * 0.02562 * 22 6 4 24 24 H 1.09005 * 109.47432 * 90.00174 * 1 2 3 25 25 H 1.09008 * 109.47436 * 210.00062 * 1 2 3 26 26 H 1.08997 * 109.47500 * 330.00219 * 1 2 3 27 27 H 1.00907 * 110.99165 * 148.32822 * 8 6 4 28 28 H 1.09006 * 109.46967 * 55.54077 * 11 9 8 29 29 H 1.09002 * 109.47269 * 175.53514 * 11 9 8 30 30 H 1.08991 * 109.47460 * 295.54336 * 11 9 8 31 31 H 1.09005 * 109.47042 * 55.01040 * 12 9 8 32 32 H 1.09004 * 109.46986 * 175.00026 * 12 9 8 33 33 H 1.09001 * 109.46965 * 299.99701 * 13 12 9 34 34 H 1.08999 * 109.47114 * 59.99358 * 13 12 9 35 35 H 0.96996 * 120.00254 * 179.97438 * 17 16 14 36 36 H 1.08000 * 121.28725 * 179.97438 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1047 1.1594 0.0000 4 6 3.4439 1.2655 -0.0005 5 8 3.9957 2.3470 -0.0010 6 6 4.2355 -0.0305 -0.0005 7 1 4.8737 -0.0398 -0.8840 8 7 5.1001 -0.0403 1.1871 9 6 6.3858 0.6129 0.9078 10 1 6.2317 1.4333 0.2068 11 6 7.3528 -0.4040 0.2983 12 6 6.9740 1.1589 2.2103 13 6 6.0679 2.2648 2.7552 14 6 6.6471 2.8021 4.0385 15 1 7.5690 2.3952 4.4269 16 6 6.0000 3.8132 4.7167 17 7 4.8776 4.3090 4.2434 18 14 6.7182 4.4797 6.3071 19 1 8.0717 5.0320 6.0458 20 1 5.8387 5.5530 6.8359 21 1 6.8149 3.3835 7.3042 22 6 3.4142 -1.3067 -0.0005 23 7 2.1183 -1.1857 -0.0010 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 5.2383 -0.9807 1.5258 28 1 6.8997 -0.8511 -0.5867 29 1 8.2789 0.0980 0.0180 30 1 7.5687 -1.1833 1.0289 31 1 7.0454 0.3542 2.9422 32 1 7.9674 1.5646 2.0185 33 1 5.9966 3.0695 2.0234 34 1 5.0746 1.8591 2.9470 35 1 4.4222 5.0201 4.7208 36 1 3.8868 -2.2778 -0.0009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491873.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:02 Heat of formation + Delta-G solvation = 16.781339 kcal Electronic energy + Delta-G solvation = -18509.493495 eV Core-core repulsion = 15608.659357 eV Total energy + Delta-G solvation = -2900.834138 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91133 -37.88094 -37.11270 -33.95776 -33.02908 -31.89027 -30.33177 -29.04346 -26.45572 -24.94358 -23.91239 -22.45615 -21.37293 -20.01547 -17.90848 -16.86747 -16.37570 -16.31854 -15.88690 -14.78166 -14.61379 -14.37474 -14.04294 -13.62679 -13.31369 -13.06771 -12.89401 -12.51911 -12.41181 -12.32258 -11.97039 -11.70190 -11.35843 -11.11841 -10.79624 -10.56114 -10.42094 -9.94691 -9.82360 -9.61071 -9.35410 -9.05031 -8.82993 -8.20890 -8.09480 -5.79299 -3.82602 -0.20111 2.07606 3.25682 3.42337 3.46555 3.48675 3.55963 3.64042 3.84920 4.32300 4.47954 4.59134 4.83313 4.98323 5.23579 5.35764 5.37818 5.48906 5.51474 5.54557 5.57229 5.93710 5.98581 6.13281 6.27280 6.53326 6.75293 6.81326 7.04691 7.32496 7.43216 7.72197 7.92729 8.12946 8.16809 8.30378 8.63108 9.27034 9.79511 11.30940 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.021827 B = 0.006067 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.535361 B = 4613.803333 C = 5451.593350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.413 3.587 3 N -0.586 5.586 4 C 0.511 3.489 5 O -0.400 6.400 6 C -0.038 4.038 7 H 0.107 0.893 8 N -0.638 5.638 9 C 0.077 3.923 10 H 0.085 0.915 11 C -0.181 4.181 12 C -0.096 4.096 13 C 0.033 3.967 14 C -0.523 4.523 15 H 0.050 0.950 16 C 0.057 3.943 17 N -0.889 5.889 18 Si 0.887 3.113 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.279 1.279 22 C 0.255 3.745 23 N -0.548 5.548 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.344 0.656 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.013 0.987 34 H 0.025 0.975 35 H 0.258 0.742 36 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.288 -15.744 -11.668 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.142 3.858 3 N -0.316 5.316 4 C 0.291 3.709 5 O -0.267 6.267 6 C -0.155 4.155 7 H 0.124 0.876 8 N -0.272 5.272 9 C -0.032 4.032 10 H 0.104 0.896 11 C -0.240 4.240 12 C -0.134 4.134 13 C -0.004 4.004 14 C -0.561 4.561 15 H 0.068 0.932 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.715 3.285 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.204 1.204 22 C 0.050 3.950 23 N -0.261 5.261 24 H 0.112 0.888 25 H 0.109 0.891 26 H 0.112 0.888 27 H 0.164 0.836 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.031 0.969 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -5.327 -13.898 -11.363 18.726 hybrid contribution 1.879 -0.369 0.414 1.959 sum -3.448 -14.267 -10.949 18.312 Atomic orbital electron populations 1.20895 0.85982 1.04934 1.04174 1.23518 0.98511 0.82806 0.80950 1.69113 1.14149 1.27685 1.20702 1.21091 0.85122 0.89379 0.75271 1.90760 1.71205 1.29422 1.35316 1.23020 0.98558 0.96093 0.97823 0.87617 1.60787 1.16218 1.23832 1.26402 1.22070 0.85620 0.95527 0.99939 0.89641 1.22557 1.01048 1.00244 1.00168 1.21618 0.98973 0.99741 0.93025 1.18948 0.94881 0.91876 0.94723 1.21282 1.08189 1.18716 1.07945 0.93197 1.25022 0.95026 0.96852 0.97520 1.70005 1.16674 1.27046 1.39096 0.86757 0.78937 0.78580 0.84243 1.20409 1.21400 1.20437 1.27772 0.89866 0.98507 0.78904 1.67866 1.12615 1.28755 1.16829 0.88846 0.89132 0.88794 0.83645 0.93753 0.91678 0.92307 0.93409 0.93035 0.96898 0.95626 0.93194 0.79303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.94 10.21 36.00 0.37 -0.58 16 2 C 0.41 5.50 7.61 -156.94 -1.19 4.31 16 3 N -0.59 -10.39 10.22 -9.61 -0.10 -10.49 16 4 C 0.51 9.77 7.71 -10.61 -0.08 9.69 16 5 O -0.40 -9.54 16.78 5.44 0.09 -9.45 16 6 C -0.04 -0.50 2.81 -68.92 -0.19 -0.70 16 7 H 0.11 1.21 7.03 -51.93 -0.37 0.85 16 8 N -0.64 -9.75 5.48 -101.02 -0.55 -10.31 16 9 C 0.08 1.28 2.23 -67.72 -0.15 1.13 16 10 H 0.09 1.63 6.75 -51.93 -0.35 1.28 16 11 C -0.18 -2.14 9.15 37.15 0.34 -1.80 16 12 C -0.10 -2.01 4.83 -26.73 -0.13 -2.14 16 13 C 0.03 0.92 4.86 -27.89 -0.14 0.78 16 14 C -0.52 -15.76 9.11 -34.44 -0.31 -16.08 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -28.96 13.29 55.43 0.74 -28.23 16 18 Si 0.89 22.86 29.54 -169.99 -5.02 17.84 16 19 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 22 C 0.26 2.35 10.96 -12.46 -0.14 2.21 16 23 N -0.55 -6.10 10.14 -7.39 -0.07 -6.17 16 24 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 26 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.34 4.06 7.90 -39.29 -0.31 3.75 16 28 H 0.04 0.42 7.49 -51.93 -0.39 0.03 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.03 0.78 7.75 -51.93 -0.40 0.37 16 35 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 36 H 0.19 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 307.87 15.07 4.64 4.64 Total: -1.00 -38.69 307.87 -7.17 -45.86 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -5.16 Total: -2.15 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.73 Total: -1.53 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.01 Total: -55.20 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -38.69 -7.17 -45.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491873.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.638 kcal (2) G-P(sol) polarization free energy of solvation -38.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds