Wall clock time and date at job start Sun Mar 29 2020 23:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30443 * 117.27386 * 2 1 4 4 C 1.34335 * 121.80116 * 180.02562 * 3 2 1 5 5 O 1.21418 * 121.55712 * 179.97438 * 4 3 2 6 6 C 1.51863 * 116.89169 * 359.97438 * 4 3 2 7 7 H 1.08996 * 108.20757 * 121.44808 * 6 4 3 8 8 N 1.46898 * 108.21039 * 238.35380 * 6 4 3 9 9 C 1.46895 * 111.00093 * 272.27597 * 8 6 4 10 10 H 1.09001 * 109.46724 * 34.24964 * 9 8 6 11 11 C 1.52993 * 109.47744 * 274.24444 * 9 8 6 12 12 C 1.53001 * 109.46857 * 154.23974 * 9 8 6 13 13 C 1.52994 * 109.47824 * 295.00906 * 12 9 8 14 14 C 1.50699 * 109.47448 * 179.97438 * 13 12 9 15 15 H 1.07998 * 119.99777 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99912 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00390 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99805 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47237 * 59.99883 * 18 16 14 20 20 H 1.48501 * 109.47095 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47006 * 299.99866 * 18 16 14 22 22 C 1.51766 * 115.81664 * 0.02562 * 6 4 3 23 23 N 1.30154 * 117.42795 * 0.02562 * 22 6 4 24 24 H 1.09005 * 109.47432 * 90.00174 * 1 2 3 25 25 H 1.09008 * 109.47436 * 210.00062 * 1 2 3 26 26 H 1.08997 * 109.47500 * 330.00219 * 1 2 3 27 27 H 1.00907 * 110.99165 * 148.32822 * 8 6 4 28 28 H 1.09006 * 109.46967 * 55.54077 * 11 9 8 29 29 H 1.09002 * 109.47269 * 175.53514 * 11 9 8 30 30 H 1.08991 * 109.47460 * 295.54336 * 11 9 8 31 31 H 1.09005 * 109.47042 * 55.01040 * 12 9 8 32 32 H 1.09004 * 109.46986 * 175.00026 * 12 9 8 33 33 H 1.09001 * 109.46965 * 299.99701 * 13 12 9 34 34 H 1.08999 * 109.47114 * 59.99358 * 13 12 9 35 35 H 0.96996 * 120.00254 * 179.97438 * 17 16 14 36 36 H 1.08000 * 121.28725 * 179.97438 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1047 1.1594 0.0000 4 6 3.4439 1.2655 -0.0005 5 8 3.9957 2.3470 -0.0010 6 6 4.2355 -0.0305 -0.0005 7 1 4.8737 -0.0398 -0.8840 8 7 5.1001 -0.0403 1.1871 9 6 6.3858 0.6129 0.9078 10 1 6.2317 1.4333 0.2068 11 6 7.3528 -0.4040 0.2983 12 6 6.9740 1.1589 2.2103 13 6 6.0679 2.2648 2.7552 14 6 6.6471 2.8021 4.0385 15 1 7.5690 2.3952 4.4269 16 6 6.0000 3.8132 4.7167 17 7 4.8776 4.3090 4.2434 18 14 6.7182 4.4797 6.3071 19 1 8.0717 5.0320 6.0458 20 1 5.8387 5.5530 6.8359 21 1 6.8149 3.3835 7.3042 22 6 3.4142 -1.3067 -0.0005 23 7 2.1183 -1.1857 -0.0010 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 5.2383 -0.9807 1.5258 28 1 6.8997 -0.8511 -0.5867 29 1 8.2789 0.0980 0.0180 30 1 7.5687 -1.1833 1.0289 31 1 7.0454 0.3542 2.9422 32 1 7.9674 1.5646 2.0185 33 1 5.9966 3.0695 2.0234 34 1 5.0746 1.8591 2.9470 35 1 4.4222 5.0201 4.7208 36 1 3.8868 -2.2778 -0.0009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491873.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:02 Heat of formation + Delta-G solvation = -15.639916 kcal Electronic energy + Delta-G solvation = -18510.899386 eV Core-core repulsion = 15608.659357 eV Total energy + Delta-G solvation = -2902.240029 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.04415 -39.15094 -38.47562 -35.57726 -34.64278 -33.40035 -31.70427 -30.46581 -27.51663 -26.91235 -24.91924 -23.69043 -23.11875 -21.60245 -19.04044 -18.44652 -18.00790 -17.58183 -17.27730 -16.53785 -16.05197 -15.72405 -15.16548 -14.73838 -14.63758 -14.50354 -14.26716 -14.07808 -13.73801 -13.29946 -13.17199 -13.05325 -12.85483 -12.82402 -12.55337 -12.36318 -12.00794 -11.60461 -11.33922 -11.27235 -11.03292 -10.93509 -10.54563 -10.29514 -9.33528 -8.15906 -6.30510 -1.18935 1.01255 1.34727 1.40328 1.48146 2.11191 2.40093 2.50053 2.75286 2.88244 3.14682 3.19804 3.47503 3.82698 4.02793 4.15845 4.25174 4.41824 4.66796 4.69524 4.75754 4.83506 4.87890 4.96181 5.07719 5.20351 5.28380 5.40988 5.53606 5.65810 5.79682 5.92879 5.97199 6.27674 6.41329 6.45580 6.92114 7.06860 7.39037 8.95016 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.021827 B = 0.006067 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.535361 B = 4613.803333 C = 5451.593350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.429 3.571 3 N -0.656 5.656 4 C 0.495 3.505 5 O -0.485 6.485 6 C -0.034 4.034 7 H 0.132 0.868 8 N -0.662 5.662 9 C 0.087 3.913 10 H 0.049 0.951 11 C -0.166 4.166 12 C -0.087 4.087 13 C 0.047 3.953 14 C -0.546 4.546 15 H 0.063 0.937 16 C -0.009 4.009 17 N -0.938 5.938 18 Si 0.970 3.030 19 H -0.264 1.264 20 H -0.286 1.286 21 H -0.261 1.261 22 C 0.293 3.707 23 N -0.556 5.556 24 H 0.120 0.880 25 H 0.115 0.885 26 H 0.082 0.918 27 H 0.367 0.633 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.053 0.947 33 H -0.040 1.040 34 H -0.012 1.012 35 H 0.259 0.741 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.295 -19.668 -11.360 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.162 3.838 3 N -0.391 5.391 4 C 0.280 3.720 5 O -0.358 6.358 6 C -0.150 4.150 7 H 0.149 0.851 8 N -0.299 5.299 9 C -0.022 4.022 10 H 0.068 0.932 11 C -0.225 4.225 12 C -0.125 4.125 13 C 0.010 3.990 14 C -0.584 4.584 15 H 0.082 0.918 16 C -0.206 4.206 17 N -0.578 5.578 18 Si 0.793 3.207 19 H -0.189 1.189 20 H -0.212 1.212 21 H -0.186 1.186 22 C 0.091 3.909 23 N -0.269 5.269 24 H 0.138 0.862 25 H 0.134 0.866 26 H 0.101 0.899 27 H 0.190 0.810 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.071 0.929 33 H -0.021 1.021 34 H 0.007 0.993 35 H 0.068 0.932 36 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -4.332 -17.928 -11.056 21.504 hybrid contribution 1.463 0.770 0.286 1.678 sum -2.868 -17.158 -10.770 20.460 Atomic orbital electron populations 1.21091 0.83468 1.05543 1.05913 1.24321 1.00203 0.82493 0.76816 1.69067 1.14281 1.30256 1.25493 1.22028 0.86335 0.90627 0.72992 1.90708 1.72552 1.32541 1.39965 1.22894 0.98514 0.95498 0.98137 0.85084 1.60382 1.15981 1.25486 1.28099 1.21732 0.87437 0.96343 0.96707 0.93238 1.22393 0.99464 0.98983 1.01639 1.21447 0.97595 0.97755 0.95713 1.18701 0.94596 0.92430 0.93268 1.21829 1.08680 1.19098 1.08769 0.91846 1.26148 0.95243 0.97145 1.02046 1.70219 1.18636 1.27761 1.41184 0.85446 0.78313 0.78086 0.78826 1.18924 1.21160 1.18567 1.28748 0.88684 0.98680 0.74757 1.68085 1.13255 1.26763 1.18819 0.86205 0.86611 0.89918 0.80958 0.90364 0.91824 0.90213 0.92021 0.92858 1.02129 0.99350 0.93237 0.72388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 10.21 71.24 0.73 -1.05 16 2 C 0.43 11.14 7.61 138.66 1.06 12.19 16 3 N -0.66 -24.63 10.22 -302.88 -3.10 -27.73 16 4 C 0.50 20.28 7.71 88.10 0.68 20.96 16 5 O -0.49 -25.85 16.78 -3.46 -0.06 -25.91 16 6 C -0.03 -0.86 2.81 44.14 0.12 -0.73 16 7 H 0.13 2.72 7.03 -2.39 -0.02 2.70 16 8 N -0.66 -19.57 5.48 -473.51 -2.59 -22.17 16 9 C 0.09 2.87 2.23 44.91 0.10 2.97 16 10 H 0.05 2.00 6.75 -2.39 -0.02 1.99 16 11 C -0.17 -3.32 9.15 71.98 0.66 -2.66 16 12 C -0.09 -3.73 4.83 30.59 0.15 -3.58 16 13 C 0.05 2.80 4.86 29.85 0.15 2.95 16 14 C -0.55 -33.90 9.11 25.60 0.23 -33.67 16 15 H 0.06 3.67 7.74 -2.91 -0.02 3.65 16 16 C -0.01 -0.57 5.46 84.65 0.46 -0.10 16 17 N -0.94 -64.21 13.29 21.45 0.28 -63.92 16 18 Si 0.97 47.72 29.54 68.60 2.03 49.75 16 19 H -0.26 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 21 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 22 C 0.29 4.12 10.96 88.70 0.97 5.10 16 23 N -0.56 -10.61 10.14 -177.30 -1.80 -12.41 16 24 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.37 7.36 7.90 -89.69 -0.71 6.65 16 28 H 0.08 1.07 7.49 -2.38 -0.02 1.06 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 32 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 33 H -0.04 -2.74 8.14 -2.39 -0.02 -2.76 16 34 H -0.01 -0.79 7.75 -2.39 -0.02 -0.81 16 35 H 0.26 16.70 8.31 -92.71 -0.77 15.93 16 36 H 0.26 0.01 8.06 -2.91 -0.02 -0.01 16 Total: -1.00 -96.45 307.87 0.44 -96.01 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: 0.37 Total: 4.01 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 5.30 Total: 2.37 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -7.20 Total: -126.23 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.06 Total: -25.91 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Total: -96.45 0.44 -96.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491873.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.374 kcal (2) G-P(sol) polarization free energy of solvation -96.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds