Wall clock time and date at job start Sun Mar 29 2020 23:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30451 * 117.27376 * 2 1 4 4 C 1.34334 * 121.80001 * 180.02562 * 3 2 1 5 5 O 1.21422 * 121.55502 * 180.02562 * 4 3 2 6 6 C 1.51858 * 116.89181 * 0.02562 * 4 3 2 7 7 H 1.08994 * 108.05591 * 238.46984 * 6 4 3 8 8 N 1.46901 * 108.20934 * 121.64640 * 6 4 3 9 9 C 1.46893 * 111.00308 * 78.78200 * 8 6 4 10 10 H 1.09004 * 109.46615 * 324.99285 * 9 8 6 11 11 C 1.52992 * 109.47411 * 84.99297 * 9 8 6 12 12 C 1.53000 * 109.47232 * 204.99834 * 9 8 6 13 13 C 1.53001 * 109.47355 * 64.99407 * 12 9 8 14 14 C 1.50694 * 109.47168 * 180.02562 * 13 12 9 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.51775 * 115.81941 * 359.97438 * 6 4 3 23 23 N 1.30155 * 117.42471 * 0.02562 * 22 6 4 24 24 H 1.09004 * 109.47188 * 269.97998 * 1 2 3 25 25 H 1.09005 * 109.47132 * 29.98066 * 1 2 3 26 26 H 1.09003 * 109.47166 * 149.97747 * 1 2 3 27 27 H 1.00903 * 110.99910 * 202.73037 * 8 6 4 28 28 H 1.09004 * 109.47241 * 60.00372 * 11 9 8 29 29 H 1.09006 * 109.47210 * 179.97438 * 11 9 8 30 30 H 1.08998 * 109.47421 * 300.00080 * 11 9 8 31 31 H 1.09002 * 109.46807 * 304.99698 * 12 9 8 32 32 H 1.08998 * 109.47285 * 184.99300 * 12 9 8 33 33 H 1.09007 * 109.46922 * 59.99890 * 13 12 9 34 34 H 1.09003 * 109.46836 * 300.00646 * 13 12 9 35 35 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 36 36 H 1.08000 * 121.28673 * 179.97438 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1048 1.1595 0.0000 4 6 3.4439 1.2655 -0.0005 5 8 3.9957 2.3471 0.0000 6 6 4.2355 -0.0304 -0.0017 7 1 4.8745 -0.0368 0.8813 8 7 5.0991 -0.0398 -1.1900 9 6 6.2913 0.7925 -0.9810 10 1 6.0295 1.6546 -0.3675 11 6 7.3693 -0.0296 -0.2718 12 6 6.8225 1.2715 -2.3335 13 6 5.7933 2.1957 -2.9874 14 6 6.3162 2.6670 -4.3198 15 1 7.2855 2.3398 -4.6659 16 6 5.5571 3.5160 -5.0971 17 7 4.3765 3.9140 -4.6759 18 14 6.2057 4.1007 -6.7484 19 1 5.2066 4.9976 -7.3831 20 1 7.4777 4.8399 -6.5470 21 1 6.4478 2.9292 -7.6281 22 6 3.4142 -1.3067 -0.0016 23 7 2.1183 -1.1857 -0.0010 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5136 26 1 -0.3634 -0.8898 -0.5142 27 1 5.3559 -0.9822 -1.4430 28 1 7.6311 -0.8917 -0.8854 29 1 8.2542 0.5879 -0.1171 30 1 6.9909 -0.3708 0.6917 31 1 7.0006 0.4115 -2.9791 32 1 7.7560 1.8144 -2.1856 33 1 5.6151 3.0557 -2.3417 34 1 4.8597 1.6528 -3.1351 35 1 3.8427 4.5116 -5.2225 36 1 3.8868 -2.2779 -0.0028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491874.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:05 Heat of formation + Delta-G solvation = 16.352454 kcal Electronic energy + Delta-G solvation = -18545.170990 eV Core-core repulsion = 15644.318255 eV Total energy + Delta-G solvation = -2900.852735 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.92611 -37.94948 -37.04156 -33.94932 -33.03381 -31.90216 -30.33190 -29.03209 -26.45284 -24.94497 -23.90667 -22.47084 -21.36802 -20.01465 -17.84722 -16.88997 -16.42474 -16.27982 -15.89400 -14.76472 -14.63177 -14.37684 -14.07657 -13.61636 -13.32809 -13.06256 -12.89549 -12.50416 -12.41086 -12.31358 -11.95093 -11.76106 -11.36985 -11.07284 -10.79596 -10.60179 -10.42517 -9.90671 -9.81886 -9.60081 -9.30367 -9.03331 -8.84082 -8.22860 -8.11267 -5.80673 -3.83584 -0.19607 2.07111 3.25384 3.41858 3.45992 3.48209 3.56973 3.65524 3.84139 4.31922 4.48409 4.58442 4.83226 4.98878 5.26507 5.38319 5.39021 5.50167 5.52951 5.54981 5.58525 5.97813 6.00814 6.15312 6.29624 6.55047 6.76378 6.81568 7.06070 7.33002 7.44052 7.69043 7.91723 8.12563 8.15780 8.28430 8.62265 9.25781 9.78500 11.29769 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.021150 B = 0.006200 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.529667 B = 4514.792655 C = 5352.692461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.416 3.584 3 N -0.587 5.587 4 C 0.514 3.486 5 O -0.407 6.407 6 C -0.039 4.039 7 H 0.103 0.897 8 N -0.638 5.638 9 C 0.071 3.929 10 H 0.093 0.907 11 C -0.180 4.180 12 C -0.095 4.095 13 C 0.032 3.968 14 C -0.522 4.522 15 H 0.050 0.950 16 C 0.056 3.944 17 N -0.890 5.890 18 Si 0.887 3.113 19 H -0.288 1.288 20 H -0.278 1.278 21 H -0.278 1.278 22 C 0.262 3.738 23 N -0.548 5.548 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.344 0.656 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.012 0.988 34 H 0.024 0.976 35 H 0.258 0.742 36 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.082 -14.619 12.756 19.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 N -0.317 5.317 4 C 0.295 3.705 5 O -0.275 6.275 6 C -0.156 4.156 7 H 0.120 0.880 8 N -0.273 5.273 9 C -0.037 4.037 10 H 0.111 0.889 11 C -0.239 4.239 12 C -0.133 4.133 13 C -0.005 4.005 14 C -0.561 4.561 15 H 0.068 0.932 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.715 3.285 19 H -0.214 1.214 20 H -0.204 1.204 21 H -0.204 1.204 22 C 0.057 3.943 23 N -0.261 5.261 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.164 0.836 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -4.212 -12.875 12.389 18.357 hybrid contribution 1.920 -0.317 -0.409 1.989 sum -2.292 -13.191 11.980 17.966 Atomic orbital electron populations 1.20903 0.85947 1.05012 1.04163 1.23535 0.98538 0.82798 0.80573 1.69109 1.13971 1.27690 1.20971 1.21061 0.85258 0.89282 0.74896 1.90719 1.71152 1.29578 1.36055 1.22968 0.98643 0.96304 0.97690 0.88022 1.60798 1.20256 1.16580 1.29676 1.22145 0.86542 0.95381 0.99680 0.88890 1.22539 1.00711 1.01018 0.99665 1.21605 0.99564 0.99598 0.92516 1.18954 0.93900 0.93553 0.94065 1.21287 1.03000 1.28073 1.03695 0.93168 1.25026 0.94989 0.96540 0.97894 1.70004 1.10931 1.34374 1.37633 0.86745 0.78534 0.78599 0.84576 1.21391 1.20398 1.20424 1.27683 0.89771 0.98423 0.78468 1.67879 1.12587 1.28690 1.16981 0.88824 0.88745 0.89081 0.83628 0.92462 0.91636 0.93814 0.93460 0.93037 0.96911 0.95718 0.93194 0.79253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.21 36.00 0.37 -0.61 16 2 C 0.42 5.64 7.61 -156.94 -1.19 4.45 16 3 N -0.59 -10.50 10.22 -9.61 -0.10 -10.60 16 4 C 0.51 9.80 7.70 -10.61 -0.08 9.72 16 5 O -0.41 -9.53 15.97 5.43 0.09 -9.44 16 6 C -0.04 -0.52 2.89 -68.91 -0.20 -0.72 16 7 H 0.10 1.15 7.00 -51.93 -0.36 0.79 16 8 N -0.64 -9.80 5.46 -101.01 -0.55 -10.35 16 9 C 0.07 1.21 2.27 -67.72 -0.15 1.06 16 10 H 0.09 1.84 5.95 -51.93 -0.31 1.53 16 11 C -0.18 -2.22 9.14 37.15 0.34 -1.88 16 12 C -0.09 -2.02 4.83 -26.73 -0.13 -2.15 16 13 C 0.03 0.91 4.86 -27.89 -0.14 0.77 16 14 C -0.52 -15.74 9.11 -34.44 -0.31 -16.06 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -28.89 13.29 55.43 0.74 -28.16 16 18 Si 0.89 22.83 29.54 -169.99 -5.02 17.81 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 C 0.26 2.46 11.05 -12.46 -0.14 2.32 16 23 N -0.55 -6.24 10.14 -7.39 -0.07 -6.31 16 24 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.34 4.05 8.04 -39.29 -0.32 3.74 16 28 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.44 7.34 -51.93 -0.38 0.06 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 34 H 0.02 0.75 7.75 -51.93 -0.40 0.34 16 35 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 36 H 0.19 0.78 8.06 -52.49 -0.42 0.35 16 LS Contribution 306.36 15.07 4.62 4.62 Total: -1.00 -38.54 306.36 -7.16 -45.70 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -5.12 Total: -1.81 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -1.73 Total: -1.46 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.01 Total: -55.42 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -38.54 -7.16 -45.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491874.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.052 kcal (2) G-P(sol) polarization free energy of solvation -38.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds