Wall clock time and date at job start Sun Mar 29 2020 23:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30451 * 117.27376 * 2 1 4 4 C 1.34334 * 121.80001 * 180.02562 * 3 2 1 5 5 O 1.21422 * 121.55502 * 180.02562 * 4 3 2 6 6 C 1.51858 * 116.89181 * 0.02562 * 4 3 2 7 7 H 1.08994 * 108.05591 * 238.46984 * 6 4 3 8 8 N 1.46901 * 108.20934 * 121.64640 * 6 4 3 9 9 C 1.46893 * 111.00308 * 78.78200 * 8 6 4 10 10 H 1.09004 * 109.46615 * 324.99285 * 9 8 6 11 11 C 1.52992 * 109.47411 * 84.99297 * 9 8 6 12 12 C 1.53000 * 109.47232 * 204.99834 * 9 8 6 13 13 C 1.53001 * 109.47355 * 64.99407 * 12 9 8 14 14 C 1.50694 * 109.47168 * 180.02562 * 13 12 9 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.51775 * 115.81941 * 359.97438 * 6 4 3 23 23 N 1.30155 * 117.42471 * 0.02562 * 22 6 4 24 24 H 1.09004 * 109.47188 * 269.97998 * 1 2 3 25 25 H 1.09005 * 109.47132 * 29.98066 * 1 2 3 26 26 H 1.09003 * 109.47166 * 149.97747 * 1 2 3 27 27 H 1.00903 * 110.99910 * 202.73037 * 8 6 4 28 28 H 1.09004 * 109.47241 * 60.00372 * 11 9 8 29 29 H 1.09006 * 109.47210 * 179.97438 * 11 9 8 30 30 H 1.08998 * 109.47421 * 300.00080 * 11 9 8 31 31 H 1.09002 * 109.46807 * 304.99698 * 12 9 8 32 32 H 1.08998 * 109.47285 * 184.99300 * 12 9 8 33 33 H 1.09007 * 109.46922 * 59.99890 * 13 12 9 34 34 H 1.09003 * 109.46836 * 300.00646 * 13 12 9 35 35 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 36 36 H 1.08000 * 121.28673 * 179.97438 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1048 1.1595 0.0000 4 6 3.4439 1.2655 -0.0005 5 8 3.9957 2.3471 0.0000 6 6 4.2355 -0.0304 -0.0017 7 1 4.8745 -0.0368 0.8813 8 7 5.0991 -0.0398 -1.1900 9 6 6.2913 0.7925 -0.9810 10 1 6.0295 1.6546 -0.3675 11 6 7.3693 -0.0296 -0.2718 12 6 6.8225 1.2715 -2.3335 13 6 5.7933 2.1957 -2.9874 14 6 6.3162 2.6670 -4.3198 15 1 7.2855 2.3398 -4.6659 16 6 5.5571 3.5160 -5.0971 17 7 4.3765 3.9140 -4.6759 18 14 6.2057 4.1007 -6.7484 19 1 5.2066 4.9976 -7.3831 20 1 7.4777 4.8399 -6.5470 21 1 6.4478 2.9292 -7.6281 22 6 3.4142 -1.3067 -0.0016 23 7 2.1183 -1.1857 -0.0010 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5136 26 1 -0.3634 -0.8898 -0.5142 27 1 5.3559 -0.9822 -1.4430 28 1 7.6311 -0.8917 -0.8854 29 1 8.2542 0.5879 -0.1171 30 1 6.9909 -0.3708 0.6917 31 1 7.0006 0.4115 -2.9791 32 1 7.7560 1.8144 -2.1856 33 1 5.6151 3.0557 -2.3417 34 1 4.8597 1.6528 -3.1351 35 1 3.8427 4.5116 -5.2225 36 1 3.8868 -2.2779 -0.0028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491874.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:05 Heat of formation + Delta-G solvation = -15.782878 kcal Electronic energy + Delta-G solvation = -18546.564483 eV Core-core repulsion = 15644.318255 eV Total energy + Delta-G solvation = -2902.246228 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.06511 -39.20856 -38.41298 -35.57887 -34.64333 -33.41257 -31.71894 -30.46861 -27.52680 -26.91674 -24.92347 -23.70578 -23.13100 -21.60688 -19.00209 -18.43956 -18.03608 -17.60581 -17.25666 -16.54298 -16.03355 -15.74377 -15.21646 -14.73814 -14.63231 -14.54605 -14.28224 -14.09071 -13.74006 -13.31409 -13.18652 -13.08194 -12.87081 -12.82793 -12.55395 -12.35324 -12.02480 -11.61511 -11.34381 -11.24556 -11.02806 -10.93146 -10.54903 -10.23534 -9.37325 -8.16801 -6.30994 -1.19246 1.00277 1.34869 1.40407 1.48203 2.10997 2.39907 2.50174 2.74516 2.88259 3.14044 3.20095 3.46808 3.83188 4.03458 4.15485 4.24571 4.42980 4.66747 4.69055 4.74593 4.83139 4.88116 4.95095 5.07454 5.19819 5.27157 5.40008 5.53037 5.65186 5.79418 5.91862 5.95310 6.27054 6.40863 6.43852 6.90904 7.06244 7.38423 8.94318 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.021150 B = 0.006200 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.529667 B = 4514.792655 C = 5352.692461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.430 3.570 3 N -0.656 5.656 4 C 0.496 3.504 5 O -0.486 6.486 6 C -0.035 4.035 7 H 0.131 0.869 8 N -0.660 5.660 9 C 0.080 3.920 10 H 0.055 0.945 11 C -0.166 4.166 12 C -0.086 4.086 13 C 0.047 3.953 14 C -0.546 4.546 15 H 0.063 0.937 16 C -0.009 4.009 17 N -0.938 5.938 18 Si 0.970 3.030 19 H -0.285 1.285 20 H -0.265 1.265 21 H -0.261 1.261 22 C 0.298 3.702 23 N -0.557 5.557 24 H 0.121 0.879 25 H 0.081 0.919 26 H 0.115 0.885 27 H 0.368 0.632 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.051 0.949 33 H -0.041 1.041 34 H -0.010 1.010 35 H 0.260 0.740 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.931 -18.346 12.535 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.163 3.837 3 N -0.392 5.392 4 C 0.282 3.718 5 O -0.359 6.359 6 C -0.151 4.151 7 H 0.148 0.852 8 N -0.298 5.298 9 C -0.029 4.029 10 H 0.074 0.926 11 C -0.224 4.224 12 C -0.124 4.124 13 C 0.010 3.990 14 C -0.584 4.584 15 H 0.081 0.919 16 C -0.206 4.206 17 N -0.578 5.578 18 Si 0.794 3.206 19 H -0.211 1.211 20 H -0.190 1.190 21 H -0.185 1.185 22 C 0.096 3.904 23 N -0.271 5.271 24 H 0.139 0.861 25 H 0.100 0.900 26 H 0.133 0.867 27 H 0.192 0.808 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.070 0.930 33 H -0.023 1.023 34 H 0.008 0.992 35 H 0.068 0.932 36 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -3.054 -16.701 12.173 20.891 hybrid contribution 1.459 0.765 -0.308 1.676 sum -1.595 -15.936 11.865 19.932 Atomic orbital electron populations 1.21095 0.83507 1.05509 1.05940 1.24324 1.00213 0.82525 0.76637 1.69063 1.14251 1.30226 1.25620 1.21978 0.86403 0.90581 0.72853 1.90670 1.72397 1.32521 1.40348 1.22870 0.98569 0.95622 0.98077 0.85212 1.60423 1.20090 1.17966 1.31363 1.21792 0.88703 0.95686 0.96739 0.92625 1.22374 0.98521 1.00709 1.00820 1.21430 0.97429 0.98537 0.94999 1.18708 0.94462 0.92569 0.93278 1.21821 1.03571 1.28357 1.04618 0.91866 1.26146 0.95035 0.96535 1.02834 1.70210 1.12761 1.35191 1.39638 0.85440 0.78055 0.78510 0.78637 1.21088 1.19027 1.18515 1.28682 0.88617 0.98718 0.74366 1.68093 1.13284 1.26722 1.18995 0.86086 0.89971 0.86670 0.80850 0.90062 0.91919 0.90849 0.91943 0.93041 1.02260 0.99204 0.93190 0.72390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.85 10.21 71.24 0.73 -1.13 16 2 C 0.43 11.44 7.61 138.66 1.06 12.50 16 3 N -0.66 -24.88 10.22 -302.89 -3.10 -27.98 16 4 C 0.50 20.21 7.70 88.10 0.68 20.89 16 5 O -0.49 -25.31 15.97 -3.47 -0.06 -25.36 16 6 C -0.03 -0.88 2.89 44.14 0.13 -0.75 16 7 H 0.13 2.62 7.00 -2.39 -0.02 2.60 16 8 N -0.66 -19.53 5.46 -473.50 -2.59 -22.11 16 9 C 0.08 2.71 2.27 44.91 0.10 2.81 16 10 H 0.06 2.34 5.95 -2.39 -0.01 2.33 16 11 C -0.17 -3.52 9.14 71.98 0.66 -2.86 16 12 C -0.09 -3.72 4.83 30.59 0.15 -3.57 16 13 C 0.05 2.79 4.86 29.85 0.15 2.93 16 14 C -0.55 -33.84 9.11 25.60 0.23 -33.61 16 15 H 0.06 3.66 7.74 -2.91 -0.02 3.64 16 16 C -0.01 -0.54 5.46 84.66 0.46 -0.08 16 17 N -0.94 -63.74 13.29 21.45 0.28 -63.46 16 18 Si 0.97 47.54 29.54 68.60 2.03 49.57 16 19 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 21 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 22 C 0.30 4.34 11.05 88.70 0.98 5.32 16 23 N -0.56 -11.03 10.14 -177.28 -1.80 -12.83 16 24 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.37 7.31 8.04 -89.69 -0.72 6.59 16 28 H 0.08 1.38 8.13 -2.39 -0.02 1.36 16 29 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.07 1.16 7.34 -2.39 -0.02 1.14 16 31 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 33 H -0.04 -2.84 8.14 -2.38 -0.02 -2.86 16 34 H -0.01 -0.69 7.75 -2.39 -0.02 -0.70 16 35 H 0.26 16.59 8.31 -92.71 -0.77 15.82 16 36 H 0.26 0.13 8.06 -2.91 -0.02 0.11 16 Total: -1.00 -95.39 306.36 0.45 -94.93 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 0.36 Total: 4.79 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 5.32 Total: 2.45 kcal Atomic # 7 Polarization: -119.18 SS G_CDS: -7.19 Total: -126.38 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.06 Total: -25.36 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -95.39 0.45 -94.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491874.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.148 kcal (2) G-P(sol) polarization free energy of solvation -95.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds