Wall clock time and date at job start Sun Mar 29 2020 22:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99977 * 2 1 4 4 H 1.48503 * 109.47008 * 240.00256 * 3 2 1 5 5 H 1.48496 * 109.46873 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47134 * 119.99959 * 3 2 1 7 7 C 1.37880 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99755 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46990 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47328 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47060 * 60.00126 * 11 10 9 13 13 N 1.46894 * 109.47515 * 180.02562 * 12 11 10 14 14 C 1.46897 * 111.00430 * 205.00020 * 13 12 11 15 15 C 1.50700 * 109.47458 * 179.97438 * 14 13 12 16 16 N 1.34502 * 126.28393 * 89.99984 * 15 14 13 17 17 C 1.31139 * 105.61194 * 179.97438 * 16 15 14 18 18 O 1.33638 * 106.89565 * 359.97438 * 17 16 15 19 19 N 1.21306 * 109.81438 * 359.73729 * 18 17 16 20 20 C 1.53006 * 109.47127 * 300.00449 * 12 11 10 21 21 C 1.52997 * 109.47164 * 59.99836 * 20 12 11 22 22 H 0.96991 * 120.00061 * 359.97438 * 1 2 3 23 23 H 1.08992 * 109.47284 * 300.00393 * 9 7 2 24 24 H 1.09004 * 109.47368 * 60.00232 * 10 9 7 25 25 H 1.09001 * 109.47372 * 300.00388 * 10 9 7 26 26 H 1.09002 * 109.47398 * 180.02562 * 11 10 9 27 27 H 1.09001 * 109.47194 * 300.00476 * 11 10 9 28 28 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 29 29 H 1.00901 * 110.99789 * 328.95595 * 13 12 11 30 30 H 1.09000 * 109.47445 * 299.99846 * 14 13 12 31 31 H 1.09001 * 109.46918 * 59.99903 * 14 13 12 32 32 H 1.07995 * 126.54837 * 179.97438 * 17 16 15 33 33 H 1.09001 * 109.47002 * 299.99574 * 20 12 11 34 34 H 1.09000 * 109.47050 * 179.97438 * 20 12 11 35 35 H 1.09002 * 109.47045 * 180.02562 * 21 20 12 36 36 H 1.09001 * 109.47375 * 59.99966 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 6 0.6003 -5.0673 -1.2514 13 7 -0.1346 -6.3392 -1.2518 14 6 -0.5020 -6.7345 -2.6180 15 6 -1.2521 -8.0410 -2.5784 16 7 -2.5837 -8.1911 -2.4622 17 6 -2.7950 -9.4853 -2.4712 18 8 -1.6009 -10.0731 -2.5916 19 7 -0.7319 -9.2292 -2.6569 20 6 -0.3940 -3.9043 -1.2502 21 6 0.3710 -2.5793 -1.2495 22 1 -0.4850 0.8400 0.0004 23 1 0.6248 -2.5571 0.8896 24 1 2.8727 -3.6047 0.8877 25 1 2.8714 -3.6039 -0.8922 26 1 2.1887 -5.8156 -0.0029 27 1 0.8541 -5.0455 0.8877 28 1 1.2265 -5.0088 -2.1416 29 1 0.3983 -7.0648 -0.7963 30 1 -1.1345 -5.9654 -3.0612 31 1 0.4008 -6.8524 -3.2173 32 1 -3.7513 -9.9813 -2.3958 33 1 -1.0203 -3.9627 -0.3600 34 1 -1.0207 -3.9612 -2.1402 35 1 -0.3373 -1.7508 -1.2482 36 1 0.9974 -2.5209 -2.1397 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324084.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:55 Heat of formation + Delta-G solvation = 54.111070 kcal Electronic energy + Delta-G solvation = -18157.924387 eV Core-core repulsion = 15258.708988 eV Total energy + Delta-G solvation = -2899.215399 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.76822 -38.32635 -36.34084 -34.71966 -32.80150 -31.92357 -29.73573 -29.03821 -26.30526 -24.32812 -23.95992 -22.31020 -21.52273 -20.41730 -18.75862 -18.22090 -18.03475 -16.29451 -16.00268 -15.61661 -14.76244 -14.59137 -14.18394 -13.42996 -13.14416 -12.94624 -12.69282 -12.41105 -12.02731 -11.88480 -11.48662 -11.25392 -11.18337 -10.97248 -10.69965 -10.54168 -10.46632 -10.23485 -10.15293 -9.82329 -9.31125 -8.89989 -8.65556 -8.29377 -8.24571 -5.93127 -3.99514 1.01517 2.08273 2.84118 3.34306 3.39176 3.41586 3.53644 3.94779 4.41945 4.48926 4.86785 5.21951 5.30913 5.36931 5.50416 5.54613 5.62731 5.85586 5.87217 6.12131 6.29422 6.41181 6.42697 6.59092 6.71582 6.76717 6.94023 7.13920 7.21574 7.36386 7.44172 7.58492 7.80267 8.00968 8.07736 8.21893 8.52177 9.04519 9.64832 11.12286 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.059099 B = 0.003875 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.665325 B = 7224.655321 C = 7501.489014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.052 0.948 9 C 0.048 3.952 10 C -0.105 4.105 11 C -0.115 4.115 12 C 0.093 3.907 13 N -0.680 5.680 14 C 0.148 3.852 15 C 0.182 3.818 16 N -0.469 5.469 17 C 0.152 3.848 18 O 0.074 5.926 19 N -0.384 5.384 20 C -0.102 4.102 21 C -0.110 4.110 22 H 0.260 0.740 23 H 0.026 0.974 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.337 0.663 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.262 0.738 33 H 0.060 0.940 34 H 0.040 0.960 35 H 0.093 0.907 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.334 -17.301 -5.157 18.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.030 3.970 10 C -0.144 4.144 11 C -0.153 4.153 12 C -0.015 4.015 13 N -0.312 5.312 14 C 0.017 3.983 15 C -0.091 4.091 16 N -0.202 5.202 17 C -0.089 4.089 18 O 0.015 5.985 19 N -0.092 5.092 20 C -0.140 4.140 21 C -0.148 4.148 22 H 0.070 0.930 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.155 0.845 30 H 0.124 0.876 31 H 0.075 0.925 32 H 0.277 0.723 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.112 0.888 36 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.340 -16.566 -5.107 17.870 hybrid contribution 0.943 0.383 -0.340 1.073 sum -3.397 -16.182 -5.447 17.409 Atomic orbital electron populations 1.69865 1.05807 1.26367 1.50810 1.24963 0.94825 0.98923 0.95250 0.86722 0.79645 0.83460 0.78519 1.20395 1.21348 1.20385 1.21203 0.92799 0.90851 1.50411 0.92936 1.18655 0.92578 0.91332 0.94435 1.21598 0.98602 0.94014 1.00143 1.21721 0.97637 0.98576 0.97409 1.21670 0.93983 0.88111 0.97730 1.60575 1.49536 1.06079 1.14999 1.20213 0.97239 0.88342 0.92477 1.25919 0.87775 0.95667 0.99780 1.71936 1.14560 1.15682 1.18028 1.30542 0.93497 0.88226 0.96612 1.85293 1.14121 1.34242 1.64851 1.74664 1.13777 0.99933 1.20793 1.21625 0.97112 0.94614 1.00679 1.21634 0.99604 0.95005 0.98562 0.93041 0.95578 0.93249 0.93517 0.93885 0.91660 0.94087 0.84532 0.87628 0.92549 0.72258 0.92104 0.94130 0.88847 0.95067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.48 11.32 55.43 0.63 -24.85 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.14 8.56 -34.44 -0.29 -14.44 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.05 1.20 2.10 -91.77 -0.19 1.00 16 10 C -0.11 -2.17 5.14 -26.73 -0.14 -2.31 16 11 C -0.12 -2.01 5.19 -26.73 -0.14 -2.15 16 12 C 0.09 1.58 2.49 -67.71 -0.17 1.41 16 13 N -0.68 -10.21 6.30 -108.00 -0.68 -10.89 16 14 C 0.15 2.01 6.11 -4.98 -0.03 1.98 16 15 C 0.18 2.42 7.73 -156.37 -1.21 1.21 16 16 N -0.47 -5.80 11.55 -13.72 -0.16 -5.96 16 17 C 0.15 1.19 13.40 51.99 0.70 1.89 16 18 O 0.07 0.73 11.31 18.11 0.20 0.94 16 19 N -0.38 -4.90 12.16 30.88 0.38 -4.53 16 20 C -0.10 -2.00 5.42 -26.73 -0.14 -2.15 16 21 C -0.11 -2.56 4.98 -26.73 -0.13 -2.70 16 22 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 23 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.04 0.69 7.80 -51.93 -0.41 0.29 16 29 H 0.34 4.76 8.34 -39.29 -0.33 4.43 16 30 H 0.11 1.46 7.44 -51.93 -0.39 1.08 16 31 H 0.06 0.71 8.06 -51.93 -0.42 0.30 16 32 H 0.26 0.42 8.06 -52.49 -0.42 -0.01 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.04 0.75 7.45 -51.93 -0.39 0.36 16 35 H 0.09 2.47 6.07 -51.93 -0.31 2.16 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 296.16 15.07 4.46 4.46 Total: -1.00 -30.90 296.16 -7.20 -38.10 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.16 Total: 1.03 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -1.85 Total: -14.64 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.16 Total: -46.23 kcal Atomic # 8 Polarization: 0.73 SS G_CDS: 0.20 Total: 0.94 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.90 -7.20 -38.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324084.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.211 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds