Wall clock time and date at job start Sun Mar 29 2020 22:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99977 * 2 1 4 4 H 1.48503 * 109.47008 * 240.00256 * 3 2 1 5 5 H 1.48496 * 109.46873 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47134 * 119.99959 * 3 2 1 7 7 C 1.37880 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99755 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46990 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47328 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47060 * 60.00126 * 11 10 9 13 13 N 1.46894 * 109.47515 * 180.02562 * 12 11 10 14 14 C 1.46897 * 111.00430 * 205.00020 * 13 12 11 15 15 C 1.50700 * 109.47458 * 179.97438 * 14 13 12 16 16 N 1.34502 * 126.28393 * 89.99984 * 15 14 13 17 17 C 1.31139 * 105.61194 * 179.97438 * 16 15 14 18 18 O 1.33638 * 106.89565 * 359.97438 * 17 16 15 19 19 N 1.21306 * 109.81438 * 359.73729 * 18 17 16 20 20 C 1.53006 * 109.47127 * 300.00449 * 12 11 10 21 21 C 1.52997 * 109.47164 * 59.99836 * 20 12 11 22 22 H 0.96991 * 120.00061 * 359.97438 * 1 2 3 23 23 H 1.08992 * 109.47284 * 300.00393 * 9 7 2 24 24 H 1.09004 * 109.47368 * 60.00232 * 10 9 7 25 25 H 1.09001 * 109.47372 * 300.00388 * 10 9 7 26 26 H 1.09002 * 109.47398 * 180.02562 * 11 10 9 27 27 H 1.09001 * 109.47194 * 300.00476 * 11 10 9 28 28 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 29 29 H 1.00901 * 110.99789 * 328.95595 * 13 12 11 30 30 H 1.09000 * 109.47445 * 299.99846 * 14 13 12 31 31 H 1.09001 * 109.46918 * 59.99903 * 14 13 12 32 32 H 1.07995 * 126.54837 * 179.97438 * 17 16 15 33 33 H 1.09001 * 109.47002 * 299.99574 * 20 12 11 34 34 H 1.09000 * 109.47050 * 179.97438 * 20 12 11 35 35 H 1.09002 * 109.47045 * 180.02562 * 21 20 12 36 36 H 1.09001 * 109.47375 * 59.99966 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 6 0.6003 -5.0673 -1.2514 13 7 -0.1346 -6.3392 -1.2518 14 6 -0.5020 -6.7345 -2.6180 15 6 -1.2521 -8.0410 -2.5784 16 7 -2.5837 -8.1911 -2.4622 17 6 -2.7950 -9.4853 -2.4712 18 8 -1.6009 -10.0731 -2.5916 19 7 -0.7319 -9.2292 -2.6569 20 6 -0.3940 -3.9043 -1.2502 21 6 0.3710 -2.5793 -1.2495 22 1 -0.4850 0.8400 0.0004 23 1 0.6248 -2.5571 0.8896 24 1 2.8727 -3.6047 0.8877 25 1 2.8714 -3.6039 -0.8922 26 1 2.1887 -5.8156 -0.0029 27 1 0.8541 -5.0455 0.8877 28 1 1.2265 -5.0088 -2.1416 29 1 0.3983 -7.0648 -0.7963 30 1 -1.1345 -5.9654 -3.0612 31 1 0.4008 -6.8524 -3.2173 32 1 -3.7513 -9.9813 -2.3958 33 1 -1.0203 -3.9627 -0.3600 34 1 -1.0207 -3.9612 -2.1402 35 1 -0.3373 -1.7508 -1.2482 36 1 0.9974 -2.5209 -2.1397 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173324084.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:54 Heat of formation + Delta-G solvation = 31.586371 kcal Electronic energy + Delta-G solvation = -18158.901131 eV Core-core repulsion = 15258.708988 eV Total energy + Delta-G solvation = -2900.192143 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.59803 -39.82635 -37.41474 -36.04403 -34.34791 -33.19083 -31.40902 -30.60844 -27.72052 -25.77606 -25.07336 -23.50749 -22.90010 -22.02185 -20.44377 -19.06781 -18.87539 -18.37950 -16.91874 -16.78076 -16.48109 -15.99179 -15.59402 -14.85325 -14.70074 -14.51836 -14.01166 -13.80328 -13.43313 -13.19077 -12.90662 -12.77826 -12.72026 -12.53000 -12.21617 -12.09850 -12.01088 -11.87572 -11.70541 -11.20462 -11.12730 -10.74764 -10.51584 -10.34264 -9.52379 -8.04843 -6.19284 0.28432 1.24010 1.42299 1.43269 1.50953 2.22812 2.45045 2.68778 3.14112 3.20700 3.28389 3.89380 4.00654 4.14347 4.28314 4.40063 4.56997 4.58747 4.68836 4.81635 4.83546 4.85031 4.96213 4.98197 5.09857 5.17060 5.29467 5.41407 5.50987 5.62158 5.71173 5.94519 6.06600 6.19892 6.32702 6.43803 6.93852 7.24101 7.48694 8.98758 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.059099 B = 0.003875 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.665325 B = 7224.655321 C = 7501.489014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.012 3.988 3 Si 0.951 3.049 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.051 0.949 9 C 0.044 3.956 10 C -0.099 4.099 11 C -0.107 4.107 12 C 0.105 3.895 13 N -0.681 5.681 14 C 0.150 3.850 15 C 0.165 3.835 16 N -0.513 5.513 17 C 0.183 3.817 18 O 0.079 5.921 19 N -0.401 5.401 20 C -0.092 4.092 21 C -0.101 4.101 22 H 0.259 0.741 23 H -0.009 1.009 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.345 0.655 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.319 0.681 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.156 -19.065 -5.682 20.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.187 4.187 3 Si 0.777 3.223 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.070 0.930 9 C 0.025 3.975 10 C -0.137 4.137 11 C -0.145 4.145 12 C -0.004 4.004 13 N -0.314 5.314 14 C 0.020 3.980 15 C -0.108 4.108 16 N -0.246 5.246 17 C -0.056 4.056 18 O 0.019 5.981 19 N -0.110 5.110 20 C -0.130 4.130 21 C -0.139 4.139 22 H 0.068 0.932 23 H 0.009 0.991 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.164 0.836 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.333 0.667 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -4.157 -18.341 -5.631 19.631 hybrid contribution 0.796 0.858 -0.170 1.183 sum -3.361 -17.483 -5.801 18.724 Atomic orbital electron populations 1.70022 1.07156 1.27016 1.51422 1.25746 0.95644 1.02327 0.94966 0.85720 0.78447 0.79340 0.78783 1.19633 1.21060 1.19765 1.21621 0.93030 0.92424 1.50400 0.93039 1.18639 0.93089 0.92352 0.93379 1.21456 0.97827 0.94084 1.00318 1.21619 0.97910 0.97721 0.97285 1.21392 0.93092 0.88080 0.97821 1.60395 1.49238 1.05474 1.16331 1.20140 0.97649 0.88733 0.91520 1.25812 0.88357 0.95622 1.01020 1.71914 1.14282 1.18147 1.20239 1.31692 0.94209 0.87037 0.92678 1.85258 1.14670 1.33598 1.64607 1.74652 1.14971 0.99949 1.21379 1.21442 0.97266 0.94006 1.00305 1.21409 0.98796 0.95963 0.97756 0.93164 0.99091 0.93248 0.93103 0.90613 0.92451 0.93326 0.83576 0.88375 0.91551 0.66687 0.93854 0.93075 0.92432 0.95311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.02 11.32 21.45 0.24 -53.77 16 2 C 0.01 0.65 5.30 84.66 0.45 1.10 16 3 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.54 -30.04 8.56 25.60 0.22 -29.82 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.04 2.22 2.10 -11.54 -0.02 2.20 16 10 C -0.10 -4.02 5.14 30.59 0.16 -3.86 16 11 C -0.11 -3.58 5.19 30.59 0.16 -3.42 16 12 C 0.11 3.43 2.49 44.92 0.11 3.54 16 13 N -0.68 -19.48 6.30 -495.59 -3.12 -22.60 16 14 C 0.15 3.89 6.11 85.56 0.52 4.41 16 15 C 0.16 4.14 7.73 138.46 1.07 5.21 16 16 N -0.51 -11.71 11.55 -315.38 -3.64 -15.36 16 17 C 0.18 2.27 13.40 130.51 1.75 4.02 16 18 O 0.08 1.36 11.31 74.87 0.85 2.21 16 19 N -0.40 -9.53 12.16 -60.39 -0.73 -10.26 16 20 C -0.09 -3.64 5.42 30.60 0.17 -3.47 16 21 C -0.10 -4.83 4.98 30.59 0.15 -4.68 16 22 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 23 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 24 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.08 2.07 8.12 -2.39 -0.02 2.05 16 27 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.05 1.55 7.80 -2.39 -0.02 1.53 16 29 H 0.35 9.05 8.34 -89.69 -0.75 8.30 16 30 H 0.10 2.65 7.44 -2.39 -0.02 2.64 16 31 H 0.07 1.57 8.06 -2.39 -0.02 1.55 16 32 H 0.32 -0.58 8.06 -2.91 -0.02 -0.60 16 33 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 1.89 7.45 -2.39 -0.02 1.87 16 35 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 36 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -68.76 296.16 0.68 -68.08 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.33 Total: 10.27 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 4.73 Total: -24.78 kcal Atomic # 7 Polarization: -94.73 SS G_CDS: -7.26 Total: -101.99 kcal Atomic # 8 Polarization: 1.36 SS G_CDS: 0.85 Total: 2.21 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -68.76 0.68 -68.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324084.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.662 kcal (2) G-P(sol) polarization free energy of solvation -68.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds