Wall clock time and date at job start Sun Mar 29 2020 23:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39668 * 127.31893 * 2 1 4 4 N 1.30864 * 107.86379 * 180.22821 * 3 2 1 5 5 N 1.28440 * 110.92341 * 359.77588 * 4 3 2 6 6 C 1.46499 * 125.19146 * 180.02562 * 5 4 3 7 7 C 1.36604 * 109.62285 * 359.97438 * 5 4 3 8 8 C 1.47159 * 126.88708 * 179.97438 * 7 5 4 9 9 O 1.21626 * 119.99997 * 99.95332 * 8 7 5 10 10 N 1.34778 * 120.00042 * 279.95572 * 8 7 5 11 11 C 1.46500 * 120.00084 * 174.80370 * 10 8 7 12 12 C 1.53000 * 109.46954 * 180.27840 * 11 10 8 13 13 C 1.53006 * 109.46884 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46799 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00559 * 359.97438 * 14 13 12 16 16 C 1.37886 * 119.99611 * 179.97438 * 14 13 12 17 17 N 1.31506 * 119.99994 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99674 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47369 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47295 * 120.00129 * 18 16 14 21 21 H 1.48505 * 109.46611 * 239.99841 * 18 16 14 22 22 H 1.08996 * 109.47281 * 270.14966 * 1 2 3 23 23 H 1.08997 * 109.46840 * 30.15010 * 1 2 3 24 24 H 1.08999 * 109.46731 * 150.14842 * 1 2 3 25 25 H 1.08003 * 126.06804 * 0.03676 * 3 2 1 26 26 H 1.09006 * 109.47183 * 274.96464 * 6 5 4 27 27 H 1.09006 * 109.47311 * 34.95917 * 6 5 4 28 28 H 1.09001 * 109.47405 * 154.96312 * 6 5 4 29 29 H 0.97000 * 119.99666 * 355.08551 * 10 8 7 30 30 H 1.09001 * 109.47024 * 300.27696 * 11 10 8 31 31 H 1.09000 * 109.46857 * 60.27755 * 11 10 8 32 32 H 1.09001 * 109.47138 * 299.99787 * 12 11 10 33 33 H 1.08992 * 109.47554 * 59.99973 * 12 11 10 34 34 H 1.09001 * 109.46816 * 299.99686 * 13 12 11 35 35 H 1.09000 * 109.47136 * 59.99788 * 13 12 11 36 36 H 0.97002 * 120.00200 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1107 0.0000 4 7 3.5877 0.6749 -0.0050 5 7 3.6206 -0.6091 -0.0035 6 6 4.8391 -1.4224 -0.0073 7 6 2.3461 -1.1007 0.0034 8 6 1.9455 -2.5167 0.0067 9 8 1.6101 -3.0514 1.0463 10 7 1.9504 -3.2211 -1.1424 11 6 1.6623 -4.6573 -1.1224 12 6 1.7387 -5.2126 -2.5460 13 6 1.4371 -6.7125 -2.5252 14 6 1.5118 -7.2593 -3.9275 15 1 1.7500 -6.6028 -4.7512 16 6 1.2759 -8.5980 -4.1588 17 7 0.9853 -9.3974 -3.1559 18 14 1.3691 -9.2760 -5.8970 19 1 1.7100 -8.1794 -6.8384 20 1 2.4148 -10.3283 -5.9624 21 1 0.0558 -9.8592 -6.2718 22 1 -0.3633 0.0027 1.0276 23 1 -0.3633 0.8886 -0.5162 24 1 -0.3633 -0.8913 -0.5115 25 1 2.0450 2.1457 0.0006 26 1 5.1866 -1.5515 -1.0325 27 1 5.6113 -0.9229 0.5778 28 1 4.6262 -2.3980 0.4296 29 1 2.1488 -2.7778 -1.9821 30 1 2.3937 -5.1659 -0.4943 31 1 0.6622 -4.8216 -0.7214 32 1 1.0073 -4.7040 -3.1741 33 1 2.7388 -5.0483 -2.9470 34 1 2.1683 -7.2214 -1.8970 35 1 0.4369 -6.8765 -2.1243 36 1 0.8198 -10.3393 -3.3185 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195522225.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:22:28 Heat of formation + Delta-G solvation = 21.961368 kcal Electronic energy + Delta-G solvation = -17749.239892 eV Core-core repulsion = 14848.630378 eV Total energy + Delta-G solvation = -2900.609515 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.64086 -39.32908 -35.54797 -34.15616 -33.42149 -32.14795 -31.12595 -28.65686 -26.82534 -26.25994 -23.77472 -22.10605 -21.08562 -20.77263 -19.60387 -17.87348 -16.68212 -16.35298 -15.85926 -15.53409 -15.24880 -14.50451 -14.32737 -14.05251 -13.55663 -13.44708 -13.33755 -12.77932 -12.63929 -12.36147 -12.27459 -11.92703 -11.82343 -10.96671 -10.84134 -10.77698 -10.63452 -10.23898 -9.95414 -9.50219 -9.30734 -9.16657 -8.98543 -8.80996 -8.42296 -6.06654 -4.09933 1.51655 2.02653 2.51484 2.70177 3.23939 3.26876 3.34799 3.38200 4.28501 4.40320 4.57788 4.84572 4.88550 4.98804 5.13205 5.22757 5.29451 5.46652 5.57082 5.59198 5.65587 5.83432 5.95218 6.04260 6.27786 6.41304 6.49101 6.56861 6.70511 6.90526 7.46481 7.57634 7.68962 7.90075 7.91563 8.09437 8.32574 8.96845 9.54723 11.04617 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.036790 B = 0.003667 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.892453 B = 7633.340642 C = 7760.207677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.158 4.158 3 C 0.003 3.997 4 N -0.286 5.286 5 N -0.274 5.274 6 C 0.086 3.914 7 C -0.029 4.029 8 C 0.586 3.414 9 O -0.522 6.522 10 N -0.712 5.712 11 C 0.115 3.885 12 C -0.121 4.121 13 C 0.024 3.976 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.185 0.815 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.402 0.598 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.019 0.981 35 H 0.020 0.980 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.862 18.633 4.818 19.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.169 4.169 3 C -0.174 4.174 4 N -0.117 5.117 5 N -0.062 5.062 6 C -0.054 4.054 7 C -0.158 4.158 8 C 0.367 3.633 9 O -0.397 6.397 10 N -0.363 5.363 11 C -0.008 4.008 12 C -0.159 4.159 13 C -0.014 4.014 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.089 0.911 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.202 0.798 26 H 0.107 0.893 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.236 0.764 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.858 18.270 5.613 19.721 hybrid contribution -0.579 -0.540 -1.325 1.544 sum 4.279 17.730 4.288 18.737 Atomic orbital electron populations 1.20128 0.88328 1.02674 1.02455 1.20702 0.96942 0.90697 1.08570 1.23428 0.87752 0.99862 1.06374 1.73115 1.24488 0.93291 1.20769 1.45534 1.05543 1.03714 1.51450 1.22204 0.83786 0.94665 1.04761 1.21489 0.85981 0.95009 1.13301 1.17047 0.78541 0.83252 0.84410 1.90854 1.47076 1.69830 1.31891 1.46265 1.70159 1.10991 1.08866 1.21778 1.01582 0.77149 1.00246 1.21906 1.01075 1.00660 0.92253 1.19039 0.97371 0.87512 0.97475 1.21226 1.47882 0.93785 0.93251 0.92578 1.25028 0.95196 0.97181 0.97024 1.69967 1.47737 1.04892 1.30614 0.86527 0.77697 0.79006 0.84711 1.19749 1.20979 1.20955 0.91126 0.91028 0.91710 0.79792 0.89325 0.88380 0.88772 0.76425 0.91459 0.91210 0.92532 0.92672 0.96243 0.96170 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.28 36.01 0.37 -0.41 16 2 C -0.16 -1.93 6.30 -104.03 -0.65 -2.58 16 3 C 0.00 0.04 12.00 -17.43 -0.21 -0.17 16 4 N -0.29 -3.59 11.90 30.59 0.36 -3.22 16 5 N -0.27 -3.35 3.75 -63.88 -0.24 -3.59 16 6 C 0.09 0.75 11.22 59.85 0.67 1.42 16 7 C -0.03 -0.39 6.71 -82.06 -0.55 -0.95 16 8 C 0.59 8.86 6.77 -12.64 -0.09 8.78 16 9 O -0.52 -9.84 17.12 5.25 0.09 -9.75 16 10 N -0.71 -9.90 5.55 -61.47 -0.34 -10.24 16 11 C 0.11 1.89 5.68 -4.04 -0.02 1.87 16 12 C -0.12 -2.25 5.27 -26.73 -0.14 -2.39 16 13 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 14 C -0.52 -14.28 9.11 -34.44 -0.31 -14.60 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 18 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.70 8.07 -51.93 -0.42 0.28 16 25 H 0.19 1.41 8.06 -52.48 -0.42 0.99 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 0.83 7.65 -51.93 -0.40 0.43 16 29 H 0.40 4.72 8.46 -40.82 -0.35 4.37 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 315.93 15.07 4.76 4.76 Total: -1.00 -33.07 315.93 -6.18 -39.24 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.35 Total: -0.64 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -1.17 Total: -7.08 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.52 Total: -42.65 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.07 -6.18 -39.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195522225.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.205 kcal (2) G-P(sol) polarization free energy of solvation -33.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds