Wall clock time and date at job start Sun Mar 29 2020 23:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39668 * 127.31893 * 2 1 4 4 N 1.30864 * 107.86379 * 180.22821 * 3 2 1 5 5 N 1.28440 * 110.92341 * 359.77588 * 4 3 2 6 6 C 1.46499 * 125.19146 * 180.02562 * 5 4 3 7 7 C 1.36604 * 109.62285 * 359.97438 * 5 4 3 8 8 C 1.47159 * 126.88708 * 179.97438 * 7 5 4 9 9 O 1.21626 * 119.99997 * 99.95332 * 8 7 5 10 10 N 1.34778 * 120.00042 * 279.95572 * 8 7 5 11 11 C 1.46500 * 120.00084 * 174.80370 * 10 8 7 12 12 C 1.53000 * 109.46954 * 180.27840 * 11 10 8 13 13 C 1.53006 * 109.46884 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46799 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00559 * 359.97438 * 14 13 12 16 16 C 1.37886 * 119.99611 * 179.97438 * 14 13 12 17 17 N 1.31506 * 119.99994 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99674 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47369 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47295 * 120.00129 * 18 16 14 21 21 H 1.48505 * 109.46611 * 239.99841 * 18 16 14 22 22 H 1.08996 * 109.47281 * 270.14966 * 1 2 3 23 23 H 1.08997 * 109.46840 * 30.15010 * 1 2 3 24 24 H 1.08999 * 109.46731 * 150.14842 * 1 2 3 25 25 H 1.08003 * 126.06804 * 0.03676 * 3 2 1 26 26 H 1.09006 * 109.47183 * 274.96464 * 6 5 4 27 27 H 1.09006 * 109.47311 * 34.95917 * 6 5 4 28 28 H 1.09001 * 109.47405 * 154.96312 * 6 5 4 29 29 H 0.97000 * 119.99666 * 355.08551 * 10 8 7 30 30 H 1.09001 * 109.47024 * 300.27696 * 11 10 8 31 31 H 1.09000 * 109.46857 * 60.27755 * 11 10 8 32 32 H 1.09001 * 109.47138 * 299.99787 * 12 11 10 33 33 H 1.08992 * 109.47554 * 59.99973 * 12 11 10 34 34 H 1.09001 * 109.46816 * 299.99686 * 13 12 11 35 35 H 1.09000 * 109.47136 * 59.99788 * 13 12 11 36 36 H 0.97002 * 120.00200 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1107 0.0000 4 7 3.5877 0.6749 -0.0050 5 7 3.6206 -0.6091 -0.0035 6 6 4.8391 -1.4224 -0.0073 7 6 2.3461 -1.1007 0.0034 8 6 1.9455 -2.5167 0.0067 9 8 1.6101 -3.0514 1.0463 10 7 1.9504 -3.2211 -1.1424 11 6 1.6623 -4.6573 -1.1224 12 6 1.7387 -5.2126 -2.5460 13 6 1.4371 -6.7125 -2.5252 14 6 1.5118 -7.2593 -3.9275 15 1 1.7500 -6.6028 -4.7512 16 6 1.2759 -8.5980 -4.1588 17 7 0.9853 -9.3974 -3.1559 18 14 1.3691 -9.2760 -5.8970 19 1 1.7100 -8.1794 -6.8384 20 1 2.4148 -10.3283 -5.9624 21 1 0.0558 -9.8592 -6.2718 22 1 -0.3633 0.0027 1.0276 23 1 -0.3633 0.8886 -0.5162 24 1 -0.3633 -0.8913 -0.5115 25 1 2.0450 2.1457 0.0006 26 1 5.1866 -1.5515 -1.0325 27 1 5.6113 -0.9229 0.5778 28 1 4.6262 -2.3980 0.4296 29 1 2.1488 -2.7778 -1.9821 30 1 2.3937 -5.1659 -0.4943 31 1 0.6622 -4.8216 -0.7214 32 1 1.0073 -4.7040 -3.1741 33 1 2.7388 -5.0483 -2.9470 34 1 2.1683 -7.2214 -1.8970 35 1 0.4369 -6.8765 -2.1243 36 1 0.8198 -10.3393 -3.3185 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195522225.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:22:27 Heat of formation + Delta-G solvation = -0.581361 kcal Electronic energy + Delta-G solvation = -17750.217418 eV Core-core repulsion = 14848.630378 eV Total energy + Delta-G solvation = -2901.587041 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.54410 -40.59421 -37.05645 -35.25930 -34.96986 -33.41438 -32.56430 -29.65871 -28.43593 -27.08843 -25.40550 -23.43616 -22.37371 -21.92939 -20.77335 -18.94891 -18.51158 -17.58464 -16.90651 -16.78191 -16.53992 -16.39547 -15.44312 -15.36276 -14.49169 -14.31397 -14.28005 -14.23350 -13.78081 -13.58586 -13.47607 -13.36774 -13.08843 -12.78924 -12.57863 -12.37738 -11.80417 -11.70637 -11.62374 -11.31162 -11.12230 -10.55911 -10.29911 -10.20886 -9.70297 -8.19732 -6.30764 0.54340 1.00730 1.41848 1.42569 1.55151 1.65372 1.66512 2.11367 2.42385 3.14574 3.47462 3.54027 4.06624 4.13733 4.18260 4.18848 4.23976 4.43011 4.51167 4.52096 4.63182 4.82399 4.88495 4.91678 5.07833 5.14128 5.15725 5.27078 5.51764 5.57126 5.70419 5.73419 5.84379 6.21533 6.30183 6.86930 6.91615 7.01576 7.38992 8.92432 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.036790 B = 0.003667 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.892453 B = 7633.340642 C = 7760.207677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.162 4.162 3 C 0.004 3.996 4 N -0.298 5.298 5 N -0.276 5.276 6 C 0.077 3.923 7 C -0.054 4.054 8 C 0.595 3.405 9 O -0.565 6.565 10 N -0.697 5.697 11 C 0.128 3.872 12 C -0.102 4.102 13 C 0.023 3.977 14 C -0.540 4.540 15 H 0.066 0.934 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.965 3.035 19 H -0.259 1.259 20 H -0.280 1.280 21 H -0.281 1.281 22 H 0.071 0.929 23 H 0.099 0.901 24 H 0.052 0.948 25 H 0.218 0.782 26 H 0.107 0.893 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.415 0.585 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.070 0.930 34 H -0.005 1.005 35 H -0.007 1.007 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.380 20.453 3.349 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.173 4.173 3 C -0.172 4.172 4 N -0.129 5.129 5 N -0.065 5.065 6 C -0.062 4.062 7 C -0.183 4.183 8 C 0.379 3.621 9 O -0.442 6.442 10 N -0.348 5.348 11 C 0.005 3.995 12 C -0.140 4.140 13 C -0.015 4.015 14 C -0.578 4.578 15 H 0.084 0.916 16 C -0.200 4.200 17 N -0.574 5.574 18 Si 0.790 3.210 19 H -0.183 1.183 20 H -0.206 1.206 21 H -0.207 1.207 22 H 0.089 0.911 23 H 0.118 0.882 24 H 0.071 0.929 25 H 0.234 0.766 26 H 0.125 0.875 27 H 0.133 0.867 28 H 0.106 0.894 29 H 0.252 0.748 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.014 0.986 35 H 0.012 0.988 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.396 20.121 4.113 21.234 hybrid contribution -0.734 -1.069 -0.831 1.540 sum 4.661 19.051 3.282 19.886 Atomic orbital electron populations 1.20198 0.87143 1.03482 1.02739 1.21078 0.97934 0.90613 1.07684 1.23984 0.86974 1.01101 1.05178 1.73117 1.25294 0.93378 1.21110 1.45812 1.05784 1.03816 1.51060 1.22464 0.83188 0.94251 1.06282 1.21323 0.87256 0.94089 1.15595 1.17199 0.77414 0.83843 0.83690 1.90832 1.49050 1.70951 1.33361 1.45999 1.69539 1.09786 1.09478 1.21402 1.00734 0.78626 0.98729 1.21607 1.02119 0.96612 0.93653 1.18950 0.95165 0.91411 0.95930 1.21703 1.47286 0.94291 0.94521 0.91620 1.25987 0.94821 0.97735 1.01422 1.70105 1.48956 1.05284 1.33102 0.85398 0.77672 0.78461 0.79497 1.18275 1.20595 1.20665 0.91074 0.88240 0.92862 0.76563 0.87483 0.86712 0.89362 0.74780 0.92118 0.92540 0.91459 0.91152 0.98622 0.98813 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 10.28 71.24 0.73 -0.70 16 2 C -0.16 -3.66 6.30 -19.48 -0.12 -3.79 16 3 C 0.00 0.09 12.00 85.18 1.02 1.11 16 4 N -0.30 -6.87 11.90 -57.14 -0.68 -7.55 16 5 N -0.28 -6.33 3.75 -356.01 -1.33 -7.67 16 6 C 0.08 1.24 11.22 127.77 1.43 2.67 16 7 C -0.05 -1.40 6.71 40.78 0.27 -1.13 16 8 C 0.60 17.84 6.77 86.59 0.59 18.42 16 9 O -0.56 -21.61 17.12 -4.11 -0.07 -21.68 16 10 N -0.70 -18.79 5.55 -466.63 -2.59 -21.38 16 11 C 0.13 4.24 5.68 86.38 0.49 4.73 16 12 C -0.10 -3.72 5.27 30.60 0.16 -3.56 16 13 C 0.02 1.16 4.97 29.85 0.15 1.31 16 14 C -0.54 -29.41 9.11 25.60 0.23 -29.17 16 15 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 16 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 17 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 18 Si 0.96 43.06 29.54 68.60 2.03 45.08 16 19 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.05 1.09 8.07 -2.39 -0.02 1.07 16 25 H 0.22 2.56 8.06 -2.91 -0.02 2.54 16 26 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.09 1.50 7.65 -2.39 -0.02 1.49 16 29 H 0.42 9.03 8.46 -92.71 -0.78 8.25 16 30 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 32 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -71.38 315.93 3.34 -68.03 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.29 Total: 10.68 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 5.42 Total: -9.75 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -4.32 Total: -92.36 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.07 Total: -21.68 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -71.38 3.34 -68.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195522225.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.453 kcal (2) G-P(sol) polarization free energy of solvation -71.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds