Wall clock time and date at job start Sun Mar 29 2020 22:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39639 * 126.06077 * 2 1 4 4 C 1.38521 * 105.34940 * 179.97438 * 3 2 1 5 5 C 1.47020 * 126.89441 * 179.97438 * 4 3 2 6 6 O 1.21673 * 119.99839 * 183.85363 * 5 4 3 7 7 N 1.34778 * 120.00133 * 3.85287 * 5 4 3 8 8 C 1.46499 * 119.99896 * 4.72628 * 7 5 4 9 9 C 1.36844 * 120.00141 * 184.72494 * 7 5 4 10 10 H 1.08004 * 119.99930 * 28.18709 * 9 7 5 11 11 C 1.39050 * 119.99853 * 208.19500 * 9 7 5 12 12 N 1.31360 * 120.00306 * 22.52671 * 11 9 7 13 13 Si 1.86800 * 119.99602 * 202.52647 * 11 9 7 14 14 H 1.48496 * 109.47528 * 59.99957 * 13 11 9 15 15 H 1.48507 * 109.47253 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47275 * 299.99823 * 13 11 9 17 17 N 1.36644 * 106.20897 * 0.02562 * 4 3 2 18 18 C 1.46500 * 125.19528 * 179.97438 * 17 4 3 19 19 C 1.52998 * 109.46868 * 234.81285 * 18 17 4 20 20 C 1.52999 * 109.46936 * 114.81467 * 18 17 4 21 21 N 1.28443 * 109.60698 * 0.22210 * 17 4 3 22 22 H 1.09001 * 109.47380 * 89.99893 * 1 2 3 23 23 H 1.09004 * 109.47075 * 210.00180 * 1 2 3 24 24 H 1.09006 * 109.47243 * 329.99521 * 1 2 3 25 25 H 1.08000 * 127.32709 * 0.02562 * 3 2 1 26 26 H 1.08994 * 109.47132 * 54.37461 * 8 7 5 27 27 H 1.09001 * 109.47081 * 174.37712 * 8 7 5 28 28 H 1.09000 * 109.47092 * 294.37268 * 8 7 5 29 29 H 0.97004 * 120.00366 * 180.02562 * 12 11 9 30 30 H 1.09002 * 109.46603 * 354.81540 * 18 17 4 31 31 H 1.08990 * 109.47322 * 299.99418 * 19 18 17 32 32 H 1.08995 * 109.47359 * 60.00621 * 19 18 17 33 33 H 1.09006 * 109.46677 * 179.97438 * 19 18 17 34 34 H 1.08992 * 109.47498 * 59.99796 * 20 18 17 35 35 H 1.08996 * 109.46810 * 180.02562 * 20 18 17 36 36 H 1.09010 * 109.47016 * 299.99821 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3290 1.1288 0.0000 4 6 3.6246 0.6389 0.0006 5 6 4.8661 1.4266 0.0003 6 8 5.9430 0.8647 -0.0699 7 7 4.8112 2.7710 0.0778 8 6 3.5226 3.4418 0.2665 9 6 5.9592 3.5094 -0.0197 10 1 6.7981 3.1312 -0.5850 11 6 6.0455 4.7466 0.6091 12 7 5.2608 5.0230 1.6257 13 14 7.2774 6.0157 0.0081 14 1 6.9894 6.3529 -1.4091 15 1 7.1708 7.2416 0.8395 16 1 8.6511 5.4620 0.1158 17 7 3.5174 -0.7233 0.0003 18 6 4.6446 -1.6590 0.0002 19 6 4.5061 -2.6241 -1.1789 20 6 4.6502 -2.4508 1.3094 21 7 2.2773 -1.0580 -0.0051 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5139 25 1 2.0202 2.1638 0.0004 26 1 3.0257 3.0333 1.1464 27 1 3.6861 4.5106 0.4050 28 1 2.8971 3.2809 -0.6116 29 1 5.3208 5.8862 2.0641 30 1 5.5778 -1.1035 -0.0925 31 1 3.5729 -3.1795 -1.0861 32 1 4.5022 -2.0601 -2.1115 33 1 5.3451 -3.3201 -1.1792 34 1 3.7170 -3.0062 1.4022 35 1 5.4891 -3.1467 1.3095 36 1 4.7488 -1.7632 2.1495 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199221451.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:18 Heat of formation + Delta-G solvation = 55.127800 kcal Electronic energy + Delta-G solvation = -19032.387888 eV Core-core repulsion = 16133.216577 eV Total energy + Delta-G solvation = -2899.171310 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.93033 -38.19891 -35.70908 -34.62534 -32.05401 -31.51024 -30.02794 -27.21258 -27.10409 -26.34108 -25.10693 -22.08837 -21.34029 -20.44425 -17.89952 -17.18114 -16.17492 -15.66161 -15.46858 -14.79119 -14.47614 -14.11495 -13.80256 -13.48650 -13.16749 -12.97965 -12.48653 -12.32954 -12.06855 -11.98276 -11.90421 -11.75918 -11.55046 -11.26984 -11.09134 -10.90926 -10.70341 -10.46557 -10.44671 -9.80698 -9.08497 -8.55111 -8.34804 -8.26127 -7.71928 -6.51281 -4.01758 2.11705 3.00428 3.10958 3.17962 3.18651 3.23231 4.02918 4.23739 4.72169 4.87274 4.98952 5.17937 5.20686 5.40102 5.54770 5.64819 5.68076 5.83297 5.87155 5.89374 5.90855 6.03449 6.14422 6.23916 6.31779 6.33499 6.37118 6.55511 6.57236 7.07540 7.16977 7.42957 7.46667 8.01855 8.33710 8.74088 9.01888 9.23316 9.84059 10.52574 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.026660 B = 0.006816 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.000814 B = 4107.076963 C = 4848.354358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.008 3.992 3 C -0.230 4.230 4 C 0.006 3.994 5 C 0.501 3.499 6 O -0.592 6.592 7 N -0.411 5.411 8 C 0.076 3.924 9 C -0.309 4.309 10 H 0.101 0.899 11 C 0.036 3.964 12 N -0.858 5.858 13 Si 0.926 3.074 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.270 1.270 17 N -0.261 5.261 18 C 0.128 3.872 19 C -0.154 4.154 20 C -0.156 4.156 21 N -0.297 5.297 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.173 0.827 26 H 0.052 0.948 27 H 0.100 0.900 28 H 0.039 0.961 29 H 0.273 0.727 30 H 0.141 0.859 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.475 -6.825 -2.340 9.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.149 4.149 3 C -0.259 4.259 4 C -0.122 4.122 5 C 0.290 3.710 6 O -0.480 6.480 7 N -0.127 5.127 8 C -0.068 4.068 9 C -0.437 4.437 10 H 0.119 0.881 11 C -0.170 4.170 12 N -0.495 5.495 13 Si 0.752 3.248 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.195 1.195 17 N -0.049 5.049 18 C 0.028 3.972 19 C -0.211 4.211 20 C -0.214 4.214 21 N -0.130 5.130 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.190 0.810 26 H 0.070 0.930 27 H 0.118 0.882 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.158 0.842 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.874 -8.172 -2.231 10.309 hybrid contribution 0.463 1.547 -0.069 1.616 sum -5.412 -6.625 -2.300 8.858 Atomic orbital electron populations 1.19965 0.87380 1.02426 1.01951 1.21894 0.96515 0.89562 1.06970 1.22963 0.90715 1.00810 1.11401 1.21904 0.96704 0.84728 1.08884 1.16870 0.85803 0.82616 0.85716 1.90512 1.29812 1.69617 1.58011 1.43194 1.07385 1.02811 1.59284 1.22232 0.84731 1.02027 0.97801 1.19607 0.94558 0.98936 1.30619 0.88136 1.25418 0.98327 0.99328 0.93933 1.69988 1.39192 1.23443 1.16861 0.86007 0.80646 0.79229 0.78967 1.19618 1.20760 1.19515 1.45681 1.04286 1.04232 1.50673 1.22014 0.88181 0.90435 0.96577 1.22048 1.02769 0.98951 0.97375 1.22085 1.02612 1.00190 0.96465 1.72841 0.90035 1.28100 1.22041 0.91577 0.91749 0.91007 0.81048 0.92951 0.88218 0.94307 0.91713 0.84177 0.91579 0.92244 0.90867 0.91831 0.90795 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 10.45 36.00 0.38 -0.38 16 2 C 0.01 0.15 7.22 -82.48 -0.60 -0.45 16 3 C -0.23 -4.48 8.86 -38.95 -0.35 -4.83 16 4 C 0.01 0.14 6.87 -82.06 -0.56 -0.42 16 5 C 0.50 12.87 7.60 -12.70 -0.10 12.77 16 6 O -0.59 -16.37 14.17 5.21 0.07 -16.30 16 7 N -0.41 -10.64 2.98 -123.57 -0.37 -11.00 16 8 C 0.08 1.67 7.72 59.85 0.46 2.13 16 9 C -0.31 -8.45 9.07 -15.01 -0.14 -8.59 16 10 H 0.10 2.84 7.63 -52.48 -0.40 2.44 16 11 C 0.04 0.92 4.80 -17.45 -0.08 0.84 16 12 N -0.86 -22.36 11.27 55.50 0.63 -21.74 16 13 Si 0.93 19.82 29.61 -169.99 -5.03 14.79 16 14 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 15 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 17 N -0.26 -5.27 3.09 -50.70 -0.16 -5.43 16 18 C 0.13 2.26 3.55 -67.93 -0.24 2.02 16 19 C -0.15 -2.22 9.30 37.16 0.35 -1.87 16 20 C -0.16 -2.34 9.45 37.16 0.35 -1.99 16 21 N -0.30 -5.68 11.52 33.63 0.39 -5.29 16 22 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.17 3.03 4.32 -52.49 -0.23 2.80 16 26 H 0.05 1.12 6.73 -51.93 -0.35 0.77 16 27 H 0.10 2.32 5.52 -51.93 -0.29 2.04 16 28 H 0.04 0.75 6.28 -51.93 -0.33 0.42 16 29 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 30 H 0.14 2.84 5.32 -51.93 -0.28 2.56 16 31 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 LS Contribution 296.20 15.07 4.46 4.46 Total: -1.00 -30.78 296.20 -5.34 -36.12 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -4.80 Total: 5.16 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -0.53 Total: -0.77 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.49 Total: -43.46 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.07 Total: -16.30 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.78 -5.34 -36.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199221451.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.246 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds