Wall clock time and date at job start Sun Mar 29 2020 22:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39639 * 126.06077 * 2 1 4 4 C 1.38521 * 105.34940 * 179.97438 * 3 2 1 5 5 C 1.47020 * 126.89441 * 179.97438 * 4 3 2 6 6 O 1.21673 * 119.99839 * 183.85363 * 5 4 3 7 7 N 1.34778 * 120.00133 * 3.85287 * 5 4 3 8 8 C 1.46499 * 119.99896 * 4.72628 * 7 5 4 9 9 C 1.36844 * 120.00141 * 184.72494 * 7 5 4 10 10 H 1.08004 * 119.99930 * 28.18709 * 9 7 5 11 11 C 1.39050 * 119.99853 * 208.19500 * 9 7 5 12 12 N 1.31360 * 120.00306 * 22.52671 * 11 9 7 13 13 Si 1.86800 * 119.99602 * 202.52647 * 11 9 7 14 14 H 1.48496 * 109.47528 * 59.99957 * 13 11 9 15 15 H 1.48507 * 109.47253 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47275 * 299.99823 * 13 11 9 17 17 N 1.36644 * 106.20897 * 0.02562 * 4 3 2 18 18 C 1.46500 * 125.19528 * 179.97438 * 17 4 3 19 19 C 1.52998 * 109.46868 * 234.81285 * 18 17 4 20 20 C 1.52999 * 109.46936 * 114.81467 * 18 17 4 21 21 N 1.28443 * 109.60698 * 0.22210 * 17 4 3 22 22 H 1.09001 * 109.47380 * 89.99893 * 1 2 3 23 23 H 1.09004 * 109.47075 * 210.00180 * 1 2 3 24 24 H 1.09006 * 109.47243 * 329.99521 * 1 2 3 25 25 H 1.08000 * 127.32709 * 0.02562 * 3 2 1 26 26 H 1.08994 * 109.47132 * 54.37461 * 8 7 5 27 27 H 1.09001 * 109.47081 * 174.37712 * 8 7 5 28 28 H 1.09000 * 109.47092 * 294.37268 * 8 7 5 29 29 H 0.97004 * 120.00366 * 180.02562 * 12 11 9 30 30 H 1.09002 * 109.46603 * 354.81540 * 18 17 4 31 31 H 1.08990 * 109.47322 * 299.99418 * 19 18 17 32 32 H 1.08995 * 109.47359 * 60.00621 * 19 18 17 33 33 H 1.09006 * 109.46677 * 179.97438 * 19 18 17 34 34 H 1.08992 * 109.47498 * 59.99796 * 20 18 17 35 35 H 1.08996 * 109.46810 * 180.02562 * 20 18 17 36 36 H 1.09010 * 109.47016 * 299.99821 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3290 1.1288 0.0000 4 6 3.6246 0.6389 0.0006 5 6 4.8661 1.4266 0.0003 6 8 5.9430 0.8647 -0.0699 7 7 4.8112 2.7710 0.0778 8 6 3.5226 3.4418 0.2665 9 6 5.9592 3.5094 -0.0197 10 1 6.7981 3.1312 -0.5850 11 6 6.0455 4.7466 0.6091 12 7 5.2608 5.0230 1.6257 13 14 7.2774 6.0157 0.0081 14 1 6.9894 6.3529 -1.4091 15 1 7.1708 7.2416 0.8395 16 1 8.6511 5.4620 0.1158 17 7 3.5174 -0.7233 0.0003 18 6 4.6446 -1.6590 0.0002 19 6 4.5061 -2.6241 -1.1789 20 6 4.6502 -2.4508 1.3094 21 7 2.2773 -1.0580 -0.0051 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5139 25 1 2.0202 2.1638 0.0004 26 1 3.0257 3.0333 1.1464 27 1 3.6861 4.5106 0.4050 28 1 2.8971 3.2809 -0.6116 29 1 5.3208 5.8862 2.0641 30 1 5.5778 -1.1035 -0.0925 31 1 3.5729 -3.1795 -1.0861 32 1 4.5022 -2.0601 -2.1115 33 1 5.3451 -3.3201 -1.1792 34 1 3.7170 -3.0062 1.4022 35 1 5.4891 -3.1467 1.3095 36 1 4.7488 -1.7632 2.1495 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199221451.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:17 Heat of formation + Delta-G solvation = 35.805343 kcal Electronic energy + Delta-G solvation = -19033.225772 eV Core-core repulsion = 16133.216577 eV Total energy + Delta-G solvation = -2900.009195 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.45215 -40.12291 -37.26495 -36.39223 -33.99927 -32.78176 -31.70116 -28.57310 -28.29841 -28.05641 -27.02326 -23.77437 -22.72802 -22.09805 -19.45900 -19.15479 -17.89032 -17.39623 -17.02265 -16.58385 -15.92629 -15.86671 -15.60520 -14.88619 -14.71667 -14.29803 -13.78487 -13.74978 -13.45532 -13.39879 -13.32016 -13.14339 -13.10675 -12.96121 -12.57350 -12.35837 -12.34920 -12.18007 -12.10786 -11.36768 -10.98507 -10.49193 -9.95922 -9.77624 -9.61496 -8.47393 -6.08415 0.44418 1.40681 1.44164 1.51239 1.59145 1.71560 2.25094 2.36022 2.94031 3.01769 3.51591 3.79998 3.89955 3.94574 4.22056 4.25444 4.48763 4.58848 4.60077 4.60265 4.70204 4.76612 4.80267 4.87818 4.95818 5.02128 5.10987 5.14079 5.24643 5.26431 5.39226 5.72819 5.99388 6.02995 6.37126 7.01090 7.21196 7.30318 7.87545 8.56214 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.026660 B = 0.006816 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.000814 B = 4107.076963 C = 4848.354358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.009 3.991 3 C -0.222 4.222 4 C -0.034 4.034 5 C 0.490 3.510 6 O -0.628 6.628 7 N -0.426 5.426 8 C 0.083 3.917 9 C -0.351 4.351 10 H 0.076 0.924 11 C 0.007 3.993 12 N -0.877 5.877 13 Si 0.993 3.007 14 H -0.262 1.262 15 H -0.267 1.267 16 H -0.275 1.275 17 N -0.264 5.264 18 C 0.115 3.885 19 C -0.142 4.142 20 C -0.146 4.146 21 N -0.297 5.297 22 H 0.085 0.915 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.188 0.812 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.281 0.719 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.067 -6.990 -2.543 10.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.149 4.149 3 C -0.250 4.250 4 C -0.162 4.162 5 C 0.280 3.720 6 O -0.517 6.517 7 N -0.141 5.141 8 C -0.059 4.059 9 C -0.479 4.479 10 H 0.094 0.906 11 C -0.198 4.198 12 N -0.513 5.513 13 Si 0.815 3.185 14 H -0.187 1.187 15 H -0.192 1.192 16 H -0.200 1.200 17 N -0.052 5.052 18 C 0.015 3.985 19 C -0.200 4.200 20 C -0.203 4.203 21 N -0.130 5.130 22 H 0.103 0.897 23 H 0.094 0.906 24 H 0.110 0.890 25 H 0.204 0.796 26 H 0.074 0.926 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.126 0.874 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.123 0.877 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.496 -8.333 -2.427 11.468 hybrid contribution 0.905 1.532 0.026 1.779 sum -6.591 -6.801 -2.401 9.770 Atomic orbital electron populations 1.20162 0.83570 1.04074 1.03687 1.22687 0.98707 0.88268 1.05203 1.23226 0.89838 1.02151 1.09804 1.21657 0.96264 0.85934 1.12323 1.17405 0.86735 0.82930 0.84900 1.90471 1.31520 1.70411 1.59333 1.43432 1.08190 1.03102 1.59400 1.22264 0.83685 1.00779 0.99183 1.19605 0.95230 1.00557 1.32460 0.90580 1.26217 1.00073 1.00141 0.93367 1.70037 1.40105 1.24163 1.17041 0.85014 0.77737 0.76756 0.78959 1.18658 1.19178 1.20018 1.45964 1.05139 1.03759 1.50330 1.22183 0.86459 0.90503 0.99333 1.21995 1.04502 0.98415 0.95060 1.22037 1.04432 0.99825 0.94030 1.72864 0.89652 1.28619 1.21850 0.89675 0.90558 0.88962 0.79566 0.92583 0.89455 0.91473 0.90940 0.87425 0.90766 0.93700 0.87809 0.90874 0.87709 0.94364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.24 10.45 71.24 0.74 -0.50 16 2 C 0.01 0.29 7.22 43.04 0.31 0.60 16 3 C -0.22 -8.37 8.86 22.68 0.20 -8.17 16 4 C -0.03 -1.52 6.87 40.77 0.28 -1.24 16 5 C 0.49 26.25 7.60 86.55 0.66 26.91 16 6 O -0.63 -36.78 14.17 -4.26 -0.06 -36.84 16 7 N -0.43 -22.73 2.98 -663.10 -1.97 -24.70 16 8 C 0.08 3.69 7.72 127.77 0.99 4.68 16 9 C -0.35 -19.89 9.07 84.11 0.76 -19.12 16 10 H 0.08 4.56 7.63 -2.91 -0.02 4.54 16 11 C 0.01 0.34 4.80 84.96 0.41 0.74 16 12 N -0.88 -45.80 11.27 21.68 0.24 -45.55 16 13 Si 0.99 40.71 29.61 68.60 2.03 42.74 16 14 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 15 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 16 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 17 N -0.26 -10.66 3.09 -314.30 -0.97 -11.63 16 18 C 0.12 4.09 3.55 44.99 0.16 4.25 16 19 C -0.14 -3.95 9.30 71.98 0.67 -3.28 16 20 C -0.15 -4.28 9.45 71.98 0.68 -3.60 16 21 N -0.30 -10.90 11.52 -47.51 -0.55 -11.44 16 22 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 23 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 25 H 0.19 6.26 4.32 -2.91 -0.01 6.25 16 26 H 0.06 2.39 6.73 -2.39 -0.02 2.37 16 27 H 0.09 4.07 5.52 -2.39 -0.01 4.06 16 28 H 0.07 2.53 6.28 -2.39 -0.01 2.52 16 29 H 0.28 13.49 8.31 -92.71 -0.77 12.72 16 30 H 0.11 4.58 5.32 -2.39 -0.01 4.57 16 31 H 0.07 1.94 8.09 -2.39 -0.02 1.92 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -68.90 296.20 5.67 -63.24 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 1.08 Total: 22.92 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 5.86 Total: 1.27 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -3.25 Total: -93.33 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -0.06 Total: -36.84 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -68.90 5.67 -63.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199221451.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.043 kcal (2) G-P(sol) polarization free energy of solvation -68.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds