Wall clock time and date at job start Sun Mar 29 2020 22:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99805 * 2 1 4 4 H 1.48499 * 109.47168 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47113 * 299.99549 * 3 2 1 6 6 H 1.48499 * 109.46948 * 59.99708 * 3 2 1 7 7 C 1.37879 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99303 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00281 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47180 * 179.97438 * 9 7 2 11 11 N 1.40075 * 126.03658 * 90.02013 * 10 9 7 12 12 C 1.30830 * 108.33872 * 179.97438 * 11 10 9 13 13 C 1.50705 * 125.85408 * 179.97438 * 12 11 10 14 14 C 1.53126 * 109.52008 * 214.70673 * 13 12 11 15 15 C 1.53033 * 109.27720 * 182.43857 * 14 13 12 16 16 N 1.46845 * 109.52117 * 59.18142 * 15 14 13 17 17 C 1.46852 * 111.19967 * 298.25363 * 16 15 14 18 18 C 1.53036 * 109.51942 * 61.74602 * 17 16 15 19 19 C 1.39821 * 108.28402 * 0.02562 * 12 11 10 20 20 C 1.35134 * 126.03639 * 269.99825 * 10 9 7 21 21 O 1.35753 * 126.19247 * 0.04850 * 20 10 9 22 22 H 0.96994 * 120.00255 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47627 * 59.99163 * 9 7 2 24 24 H 1.09006 * 109.46990 * 299.99441 * 9 7 2 25 25 H 1.08998 * 109.52325 * 334.89592 * 13 12 11 26 26 H 1.08998 * 109.49884 * 302.38155 * 14 13 12 27 27 H 1.08999 * 109.49976 * 62.49930 * 14 13 12 28 28 H 1.08998 * 109.46271 * 299.16262 * 15 14 13 29 29 H 1.09001 * 109.46095 * 179.19197 * 15 14 13 30 30 H 1.00907 * 110.99977 * 174.15901 * 16 15 14 31 31 H 1.09000 * 109.46371 * 301.72925 * 17 16 15 32 32 H 1.09000 * 109.46459 * 181.76153 * 17 16 15 33 33 H 1.09005 * 109.50018 * 180.88327 * 18 17 16 34 34 H 1.08993 * 109.50538 * 60.75961 * 18 17 16 35 35 H 1.07994 * 126.07655 * 179.97438 * 19 12 11 36 36 H 0.96703 * 113.99355 * 90.00210 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 7 2.7383 -4.2393 1.1332 12 6 3.5479 -5.1869 0.7355 13 6 4.3357 -6.1083 1.6308 14 6 5.6856 -6.4233 0.9802 15 6 6.4554 -7.4068 1.8644 16 7 5.6713 -8.6376 2.0274 17 6 4.3906 -8.3671 2.6932 18 6 3.5591 -7.4122 1.8336 19 6 3.5578 -5.1973 -0.6626 20 6 2.7197 -4.2169 -1.0922 21 8 2.4511 -3.9014 -2.3850 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8895 24 1 0.6241 -2.5567 0.8904 25 1 4.4986 -5.6275 2.5954 26 1 5.5214 -6.8680 -0.0014 27 1 6.2608 -5.5038 0.8722 28 1 6.6312 -6.9561 2.8412 29 1 7.4110 -7.6443 1.3969 30 1 6.1978 -9.3383 2.5275 31 1 4.5761 -7.9119 3.6661 32 1 3.8465 -9.3019 2.8276 33 1 2.6152 -7.1993 2.3355 34 1 3.3616 -7.8724 0.8656 35 1 4.1294 -5.8654 -1.2896 36 1 3.0452 -3.2364 -2.7590 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245917449.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:22 Heat of formation + Delta-G solvation = 20.435316 kcal Electronic energy + Delta-G solvation = -18335.924035 eV Core-core repulsion = 15435.248346 eV Total energy + Delta-G solvation = -2900.675689 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.66840 -38.44282 -36.51476 -33.96609 -32.77347 -30.80133 -30.72685 -28.49611 -26.91948 -24.28835 -22.96195 -22.59013 -20.74560 -19.89451 -18.89511 -17.49632 -16.70729 -16.49477 -15.63161 -14.74218 -14.65020 -14.17327 -14.14991 -13.90888 -13.48518 -13.11195 -13.02447 -12.94251 -12.28126 -12.05564 -11.67501 -11.29996 -11.13827 -10.93623 -10.86432 -10.84630 -10.47782 -10.35316 -10.26051 -9.76782 -9.61846 -8.67992 -8.55713 -8.26262 -7.75398 -6.29249 -4.37533 2.54292 3.17020 3.24808 3.26104 3.29273 3.42934 4.13857 4.24781 4.60233 4.88554 4.94964 5.03827 5.05729 5.24104 5.39849 5.43380 5.58853 5.69434 5.78835 5.80329 5.96826 6.06357 6.19388 6.21985 6.33369 6.48470 6.67200 6.92751 6.94239 7.03460 7.26871 7.33678 7.45263 7.66975 7.85431 8.27437 8.55423 8.70882 9.29067 10.78762 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.033788 B = 0.004808 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.485433 B = 5821.670273 C = 5982.449565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.252 3.748 10 N -0.333 5.333 11 N -0.279 5.279 12 C 0.061 3.939 13 C 0.000 4.000 14 C -0.106 4.106 15 C 0.058 3.942 16 N -0.691 5.691 17 C 0.059 3.941 18 C -0.106 4.106 19 C -0.299 4.299 20 C 0.259 3.741 21 O -0.470 6.470 22 H 0.268 0.732 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.029 0.971 29 H 0.074 0.926 30 H 0.339 0.661 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.140 0.860 36 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.373 -13.091 1.791 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.734 3.266 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.081 0.919 9 C 0.135 3.865 10 N -0.123 5.123 11 N -0.106 5.106 12 C -0.102 4.102 13 C -0.020 4.020 14 C -0.145 4.145 15 C -0.071 4.071 16 N -0.322 5.322 17 C -0.070 4.070 18 C -0.145 4.145 19 C -0.330 4.330 20 C 0.086 3.914 21 O -0.274 6.274 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.156 0.844 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.157 0.843 36 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 8.843 -12.602 2.104 15.539 hybrid contribution 1.238 1.262 0.011 1.768 sum 10.082 -11.340 2.115 15.321 Atomic orbital electron populations 1.69934 1.06081 1.27625 1.49015 1.24944 0.94976 0.99482 0.94361 0.86288 0.79915 0.82484 0.77900 1.19618 1.20607 1.20558 1.21316 0.93623 0.89703 1.53163 0.91861 1.19711 0.86422 0.80474 0.99926 1.49904 1.34093 1.26199 1.02070 1.77366 1.14482 1.10648 1.08088 1.21680 0.98731 0.96705 0.93116 1.19420 0.93099 0.92725 0.96797 1.21596 0.94833 0.98363 0.99671 1.21942 0.96332 0.90363 0.98455 1.60288 1.05815 1.10879 1.55231 1.21940 0.90805 0.99266 0.95006 1.21597 0.97870 0.94027 1.00983 1.20763 1.09764 1.07694 0.94784 1.18799 0.96532 0.95043 0.80981 1.84762 1.60177 1.62753 1.19665 0.92237 0.92754 0.92890 0.90538 0.90523 0.91298 0.95251 0.90798 0.84389 0.95200 0.90815 0.91304 0.90752 0.84267 0.74900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -14.92 9.39 -34.44 -0.32 -15.25 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.25 6.67 6.14 -5.20 -0.03 6.63 16 10 N -0.33 -7.97 3.60 -62.67 -0.23 -8.20 16 11 N -0.28 -6.38 12.57 33.66 0.42 -5.95 16 12 C 0.06 1.16 6.13 -82.42 -0.51 0.66 16 13 C 0.00 0.00 2.72 -91.64 -0.25 -0.25 16 14 C -0.11 -1.30 5.01 -26.65 -0.13 -1.44 16 15 C 0.06 0.59 6.55 -3.84 -0.03 0.56 16 16 N -0.69 -6.85 6.85 -113.82 -0.78 -7.63 16 17 C 0.06 0.62 6.55 -3.83 -0.03 0.59 16 18 C -0.11 -1.38 5.36 -26.65 -0.14 -1.53 16 19 C -0.30 -5.59 9.99 -39.81 -0.40 -5.99 16 20 C 0.26 5.48 7.98 -16.92 -0.14 5.34 16 21 O -0.47 -8.87 13.57 -18.97 -0.26 -9.13 16 22 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 23 H 0.05 1.47 8.13 -51.93 -0.42 1.05 16 24 H 0.05 1.49 8.14 -51.93 -0.42 1.06 16 25 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.08 0.97 7.18 -51.93 -0.37 0.60 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.34 2.61 8.90 -39.29 -0.35 2.26 16 31 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.14 2.23 7.36 -52.49 -0.39 1.84 16 36 H 0.40 5.71 9.06 45.56 0.41 6.12 16 LS Contribution 302.04 15.07 4.55 4.55 Total: -1.00 -31.03 302.04 -7.11 -38.14 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -4.47 Total: 5.79 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -2.07 Total: -8.95 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.15 Total: -46.37 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -0.26 Total: -9.13 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.03 -7.11 -38.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245917449.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.573 kcal (2) G-P(sol) polarization free energy of solvation -31.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds