Wall clock time and date at job start Sun Mar 29 2020 22:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47460 * 180.02562 * 10 9 7 12 12 C 1.35356 * 126.75368 * 124.70768 * 11 10 9 13 13 N 1.35310 * 106.17637 * 179.85273 * 12 11 10 14 14 C 1.46494 * 125.87046 * 180.11598 * 13 12 11 15 15 H 1.09004 * 110.43761 * 156.41044 * 14 13 12 16 16 C 1.54272 * 110.48461 * 33.87554 * 14 13 12 17 17 C 1.53870 * 106.59796 * 217.71167 * 16 14 13 18 18 C 1.54263 * 106.60145 * 359.97438 * 17 16 14 19 19 C 1.54883 * 110.48821 * 279.10230 * 14 13 12 20 20 H 1.09002 * 110.75761 * 38.30521 * 19 14 13 21 21 O 1.42900 * 110.75497 * 274.93089 * 19 14 13 22 22 N 1.28720 * 108.26020 * 0.42033 * 13 12 11 23 23 N 1.28635 * 110.18344 * 359.73228 * 22 13 12 24 24 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 26 26 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 27 27 H 1.09003 * 109.46788 * 300.00488 * 10 9 7 28 28 H 1.08999 * 109.46950 * 59.99414 * 10 9 7 29 29 H 1.07998 * 126.90780 * 0.02562 * 12 11 10 30 30 H 1.09002 * 110.02918 * 337.00030 * 16 14 13 31 31 H 1.09001 * 110.03213 * 98.42381 * 16 14 13 32 32 H 1.09002 * 110.02901 * 119.28877 * 17 16 14 33 33 H 1.09003 * 110.03140 * 240.66465 * 17 16 14 34 34 H 1.09002 * 110.48301 * 142.28860 * 18 17 16 35 35 H 1.08999 * 110.48736 * 264.80415 * 18 17 16 36 36 H 0.96704 * 113.99546 * 180.02562 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4915 -4.9672 -0.0012 12 6 1.6216 -5.9771 -0.8929 13 7 0.7559 -6.9402 -0.5007 14 6 0.5475 -8.2293 -1.1646 15 1 0.1420 -8.9579 -0.4626 16 6 1.8689 -8.7432 -1.7728 17 6 1.5063 -9.4125 -3.1101 18 6 -0.0228 -9.2826 -3.2676 19 6 -0.3933 -8.0653 -2.3840 20 1 -0.1885 -7.1312 -2.9071 21 8 -1.7624 -8.1314 -1.9797 22 7 0.1423 -6.5264 0.5525 23 7 0.5582 -5.3530 0.8762 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5570 0.8898 26 1 0.6239 -2.5567 -0.8903 27 1 2.8717 -3.6044 -0.8905 28 1 2.8717 -3.6044 0.8894 29 1 2.2851 -6.0090 -1.7445 30 1 2.5497 -7.9095 -1.9449 31 1 2.3298 -9.4703 -1.1042 32 1 2.0113 -8.9037 -3.9312 33 1 1.7920 -10.4642 -3.0908 34 1 -0.2841 -9.0917 -4.3084 35 1 -0.5211 -10.1833 -2.9091 36 1 -2.3923 -8.0344 -2.7070 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254123903.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:24 Heat of formation + Delta-G solvation = 31.076773 kcal Electronic energy + Delta-G solvation = -18123.419497 eV Core-core repulsion = 15223.205256 eV Total energy + Delta-G solvation = -2900.214241 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.84225 -39.16721 -35.71993 -34.35928 -33.04198 -31.81635 -29.29687 -28.49112 -27.86913 -25.20842 -22.77017 -21.95253 -21.28520 -20.37075 -19.87289 -17.89498 -17.28129 -16.27287 -15.81809 -15.38433 -14.83261 -14.47424 -14.26300 -14.13383 -13.31805 -13.15721 -12.98432 -12.67666 -12.30955 -12.05577 -11.79287 -11.41324 -11.34038 -11.03796 -10.91163 -10.82126 -10.61654 -10.39773 -10.33681 -9.91465 -9.53185 -9.41307 -9.03036 -8.44953 -8.24348 -5.89951 -3.93130 1.97476 2.52554 3.16221 3.39114 3.43479 3.45778 3.54929 3.96625 4.22850 4.40114 4.52889 4.63925 4.75192 4.81417 4.86168 5.00140 5.04363 5.32934 5.43044 5.45197 5.45457 5.50239 5.58287 5.70836 5.73323 6.03138 6.57881 6.61273 6.78867 6.96435 7.15111 7.29737 7.79367 7.96598 8.13316 8.49631 9.05661 9.14502 9.69945 11.21265 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.037139 B = 0.004139 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.753496 B = 6763.347168 C = 6851.918114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.030 3.970 10 C -0.033 4.033 11 C 0.012 3.988 12 C -0.076 4.076 13 N -0.291 5.291 14 C 0.149 3.851 15 H 0.123 0.877 16 C -0.135 4.135 17 C -0.119 4.119 18 C -0.154 4.154 19 C 0.090 3.910 20 H 0.075 0.925 21 O -0.552 6.552 22 N -0.087 5.087 23 N -0.260 5.260 24 H 0.260 0.740 25 H 0.027 0.973 26 H 0.013 0.987 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.183 0.817 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.781 -21.293 -9.604 23.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.214 1.214 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.073 4.073 11 C -0.125 4.125 12 C -0.225 4.225 13 N -0.086 5.086 14 C 0.046 3.954 15 H 0.141 0.859 16 C -0.173 4.173 17 C -0.157 4.157 18 C -0.193 4.193 19 C 0.029 3.971 20 H 0.093 0.907 21 O -0.358 6.358 22 N -0.066 5.066 23 N -0.127 5.127 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.031 0.969 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.200 0.800 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.836 -21.600 -7.926 23.081 hybrid contribution 0.901 1.138 -1.539 2.116 sum 2.736 -20.461 -9.465 22.710 Atomic orbital electron populations 1.69984 1.06067 1.26578 1.50591 1.25019 0.94800 0.99155 0.95407 0.86664 0.79551 0.83255 0.78540 1.21365 1.20217 1.20325 1.21210 0.92953 0.91026 1.50882 0.92621 1.19025 0.93699 0.90121 0.97933 1.20195 0.97589 0.88137 1.01336 1.22618 0.98304 0.98424 0.93151 1.23188 1.02587 0.91174 1.05555 1.47202 1.26942 1.14298 1.20137 1.22341 0.96575 0.82022 0.94430 0.85945 1.22531 0.95246 1.01962 0.97576 1.22010 0.95457 1.01560 0.96640 1.23021 0.96682 0.98995 1.00579 1.23145 0.82620 0.98029 0.93293 0.90683 1.86571 1.14916 1.96091 1.38218 1.78313 1.18383 1.08573 1.01296 1.75128 1.10860 1.03154 1.23578 0.93004 0.95466 0.96863 0.91623 0.91295 0.80042 0.89505 0.89537 0.90641 0.90569 0.90377 0.89913 0.76916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.90 13.29 55.43 0.74 -27.16 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.82 4.95 -27.89 -0.14 0.68 16 10 C -0.03 -0.72 5.73 -27.89 -0.16 -0.88 16 11 C 0.01 0.25 6.50 -82.78 -0.54 -0.28 16 12 C -0.08 -1.22 10.43 -17.05 -0.18 -1.40 16 13 N -0.29 -4.60 3.34 -53.15 -0.18 -4.77 16 14 C 0.15 1.64 3.61 -66.27 -0.24 1.40 16 15 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 16 C -0.13 -0.99 6.39 -25.61 -0.16 -1.15 16 17 C -0.12 -0.63 6.80 -25.62 -0.17 -0.81 16 18 C -0.15 -0.93 6.55 -25.06 -0.16 -1.10 16 19 C 0.09 0.87 3.95 -24.73 -0.10 0.77 16 20 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 21 O -0.55 -6.12 13.45 -35.23 -0.47 -6.59 16 22 N -0.09 -1.76 13.16 60.35 0.79 -0.97 16 23 N -0.26 -5.92 12.40 33.29 0.41 -5.51 16 24 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 28 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.18 2.14 7.04 -52.49 -0.37 1.77 16 30 H 0.09 0.65 6.02 -51.93 -0.31 0.34 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.38 2.51 9.12 45.56 0.42 2.93 16 LS Contribution 303.76 15.07 4.58 4.58 Total: -1.00 -36.41 303.76 -5.87 -42.28 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -4.46 Total: -2.22 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -2.26 Total: -16.65 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 1.77 Total: -38.41 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.47 Total: -6.59 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -36.41 -5.87 -42.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254123903.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.356 kcal (2) G-P(sol) polarization free energy of solvation -36.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds