Wall clock time and date at job start Sun Mar 29 2020 22:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47460 * 180.02562 * 10 9 7 12 12 C 1.35356 * 126.75368 * 124.70768 * 11 10 9 13 13 N 1.35310 * 106.17637 * 179.85273 * 12 11 10 14 14 C 1.46494 * 125.87046 * 180.11598 * 13 12 11 15 15 H 1.09004 * 110.43761 * 156.41044 * 14 13 12 16 16 C 1.54272 * 110.48461 * 33.87554 * 14 13 12 17 17 C 1.53870 * 106.59796 * 217.71167 * 16 14 13 18 18 C 1.54263 * 106.60145 * 359.97438 * 17 16 14 19 19 C 1.54883 * 110.48821 * 279.10230 * 14 13 12 20 20 H 1.09002 * 110.75761 * 38.30521 * 19 14 13 21 21 O 1.42900 * 110.75497 * 274.93089 * 19 14 13 22 22 N 1.28720 * 108.26020 * 0.42033 * 13 12 11 23 23 N 1.28635 * 110.18344 * 359.73228 * 22 13 12 24 24 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 26 26 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 27 27 H 1.09003 * 109.46788 * 300.00488 * 10 9 7 28 28 H 1.08999 * 109.46950 * 59.99414 * 10 9 7 29 29 H 1.07998 * 126.90780 * 0.02562 * 12 11 10 30 30 H 1.09002 * 110.02918 * 337.00030 * 16 14 13 31 31 H 1.09001 * 110.03213 * 98.42381 * 16 14 13 32 32 H 1.09002 * 110.02901 * 119.28877 * 17 16 14 33 33 H 1.09003 * 110.03140 * 240.66465 * 17 16 14 34 34 H 1.09002 * 110.48301 * 142.28860 * 18 17 16 35 35 H 1.08999 * 110.48736 * 264.80415 * 18 17 16 36 36 H 0.96704 * 113.99546 * 180.02562 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4915 -4.9672 -0.0012 12 6 1.6216 -5.9771 -0.8929 13 7 0.7559 -6.9402 -0.5007 14 6 0.5475 -8.2293 -1.1646 15 1 0.1420 -8.9579 -0.4626 16 6 1.8689 -8.7432 -1.7728 17 6 1.5063 -9.4125 -3.1101 18 6 -0.0228 -9.2826 -3.2676 19 6 -0.3933 -8.0653 -2.3840 20 1 -0.1885 -7.1312 -2.9071 21 8 -1.7624 -8.1314 -1.9797 22 7 0.1423 -6.5264 0.5525 23 7 0.5582 -5.3530 0.8762 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5570 0.8898 26 1 0.6239 -2.5567 -0.8903 27 1 2.8717 -3.6044 -0.8905 28 1 2.8717 -3.6044 0.8894 29 1 2.2851 -6.0090 -1.7445 30 1 2.5497 -7.9095 -1.9449 31 1 2.3298 -9.4703 -1.1042 32 1 2.0113 -8.9037 -3.9312 33 1 1.7920 -10.4642 -3.0908 34 1 -0.2841 -9.0917 -4.3084 35 1 -0.5211 -10.1833 -2.9091 36 1 -2.3923 -8.0344 -2.7070 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254123903.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:23 Heat of formation + Delta-G solvation = 3.184206 kcal Electronic energy + Delta-G solvation = -18124.629009 eV Core-core repulsion = 15223.205256 eV Total energy + Delta-G solvation = -2901.423754 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.23884 -39.91869 -36.61547 -36.09634 -34.56321 -33.56303 -31.04512 -29.25410 -28.66915 -27.18655 -23.97002 -23.81045 -22.04920 -21.61710 -21.04130 -18.86076 -18.47401 -18.18049 -17.17128 -16.46861 -16.15689 -15.83670 -15.35436 -15.06634 -14.81099 -14.67907 -14.03704 -13.76061 -13.64683 -13.30720 -12.93490 -12.85480 -12.63316 -12.45503 -12.25771 -12.18174 -12.03439 -11.76328 -11.46716 -11.34632 -11.22259 -11.14492 -10.74955 -10.52247 -9.98462 -8.15502 -6.28585 0.64770 1.41916 1.43433 1.47723 1.55036 1.60358 2.44921 2.86978 3.17481 3.27243 3.48740 3.63609 3.70857 3.94355 4.08646 4.15280 4.24331 4.28559 4.32241 4.50934 4.62594 4.77522 4.83423 4.90374 5.01935 5.05052 5.09496 5.17201 5.32361 5.34316 5.52920 5.72975 5.77254 5.88003 6.24353 6.71245 6.89513 7.41033 7.59267 8.96935 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.037139 B = 0.004139 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.753496 B = 6763.347168 C = 6851.918114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.005 4.005 3 Si 0.972 3.028 4 H -0.287 1.287 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.072 0.928 9 C 0.038 3.962 10 C -0.018 4.018 11 C -0.027 4.027 12 C -0.041 4.041 13 N -0.275 5.275 14 C 0.130 3.870 15 H 0.117 0.883 16 C -0.128 4.128 17 C -0.112 4.112 18 C -0.141 4.141 19 C 0.085 3.915 20 H 0.067 0.933 21 O -0.581 6.581 22 N -0.120 5.120 23 N -0.314 5.314 24 H 0.262 0.738 25 H -0.019 1.019 26 H -0.018 1.018 27 H 0.096 0.904 28 H 0.068 0.932 29 H 0.233 0.767 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.155 -22.415 -11.849 25.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.202 4.202 3 Si 0.796 3.204 4 H -0.213 1.213 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.091 0.909 9 C 0.001 3.999 10 C -0.057 4.057 11 C -0.166 4.166 12 C -0.191 4.191 13 N -0.069 5.069 14 C 0.029 3.971 15 H 0.135 0.865 16 C -0.166 4.166 17 C -0.150 4.150 18 C -0.179 4.179 19 C 0.025 3.975 20 H 0.085 0.915 21 O -0.390 6.390 22 N -0.098 5.098 23 N -0.180 5.180 24 H 0.071 0.929 25 H -0.001 1.001 26 H 0.001 0.999 27 H 0.115 0.885 28 H 0.086 0.914 29 H 0.249 0.751 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 4.198 -22.769 -10.176 25.290 hybrid contribution 0.087 1.371 -0.884 1.634 sum 4.285 -21.397 -11.060 24.465 Atomic orbital electron populations 1.70163 1.08264 1.27768 1.51747 1.26102 0.95697 1.03793 0.94648 0.85399 0.78098 0.77466 0.79446 1.21259 1.19104 1.18405 1.21699 0.93924 0.91790 1.50525 0.90944 1.18826 0.94068 0.92828 0.94215 1.19912 0.96323 0.86707 1.02743 1.22589 0.99469 0.99467 0.95030 1.23716 1.01381 0.89249 1.04789 1.47640 1.25169 1.15422 1.18699 1.22996 0.99614 0.79723 0.94740 0.86529 1.22600 0.92939 1.02412 0.98695 1.22041 0.94647 1.02671 0.95603 1.22950 0.97351 0.97049 1.00570 1.23269 0.81751 0.99544 0.92947 0.91548 1.86524 1.16165 1.96250 1.40067 1.78202 1.19824 1.08216 1.03519 1.75046 1.12552 1.04661 1.25741 0.92932 1.00075 0.99936 0.88543 0.91389 0.75118 0.89061 0.88364 0.89234 0.88728 0.88606 0.89565 0.75007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.47 13.29 21.45 0.28 -60.19 16 2 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 3 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 5 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 6 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.54 -31.77 9.11 25.60 0.23 -31.53 16 8 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 9 C 0.04 2.19 4.95 29.85 0.15 2.34 16 10 C -0.02 -0.78 5.73 29.85 0.17 -0.61 16 11 C -0.03 -1.11 6.50 41.60 0.27 -0.84 16 12 C -0.04 -1.24 10.43 83.49 0.87 -0.37 16 13 N -0.27 -8.50 3.34 -322.08 -1.07 -9.58 16 14 C 0.13 2.65 3.61 46.07 0.17 2.82 16 15 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 16 C -0.13 -1.44 6.39 31.32 0.20 -1.23 16 17 C -0.11 -0.71 6.80 31.32 0.21 -0.50 16 18 C -0.14 -1.24 6.55 31.68 0.21 -1.03 16 19 C 0.09 1.50 3.95 31.89 0.13 1.63 16 20 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 21 O -0.58 -12.65 13.45 -148.98 -2.00 -14.65 16 22 N -0.12 -4.98 13.16 37.02 0.49 -4.50 16 23 N -0.31 -14.96 12.40 -48.60 -0.60 -15.56 16 24 H 0.26 15.83 8.31 -92.70 -0.77 15.06 16 25 H -0.02 -1.26 8.14 -2.38 -0.02 -1.28 16 26 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 27 H 0.10 3.56 8.12 -2.39 -0.02 3.54 16 28 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 29 H 0.23 4.43 7.04 -2.91 -0.02 4.41 16 30 H 0.09 0.97 6.02 -2.39 -0.01 0.96 16 31 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.40 5.05 9.12 -74.05 -0.68 4.37 16 Total: -1.00 -83.90 303.76 2.59 -81.31 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 0.40 Total: 5.11 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 3.07 Total: -29.19 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -0.91 Total: -89.82 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -2.00 Total: -14.65 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -83.90 2.59 -81.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254123903.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.494 kcal (2) G-P(sol) polarization free energy of solvation -83.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds