Wall clock time and date at job start Sun Mar 29 2020 23:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34485 * 126.83128 * 2 1 4 4 N 1.36444 * 108.85783 * 180.19234 * 3 2 1 5 5 H 0.96999 * 124.85640 * 179.82338 * 4 3 2 6 6 C 1.34665 * 110.29497 * 359.55223 * 4 3 2 7 7 C 1.36766 * 108.39514 * 0.26467 * 6 4 3 8 8 C 1.47263 * 126.94056 * 180.02562 * 7 6 4 9 9 O 1.21635 * 120.00035 * 179.97438 * 8 7 6 10 10 N 1.34774 * 119.99908 * 359.97438 * 8 7 6 11 11 C 1.46501 * 119.99963 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47188 * 179.97438 * 11 10 8 13 13 N 1.46502 * 109.47163 * 179.97438 * 12 11 10 14 14 C 1.46499 * 120.00586 * 270.00193 * 13 12 11 15 15 C 1.36946 * 119.99727 * 90.00268 * 13 12 11 16 16 H 1.07997 * 119.99947 * 22.34333 * 15 13 12 17 17 C 1.38814 * 119.99691 * 202.34606 * 15 13 12 18 18 N 1.31613 * 120.00322 * 11.34478 * 17 15 13 19 19 Si 1.86800 * 119.99686 * 191.34553 * 17 15 13 20 20 H 1.48503 * 109.46972 * 59.99887 * 19 17 15 21 21 H 1.48496 * 109.47155 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47177 * 300.00441 * 19 17 15 23 23 H 1.08996 * 109.47148 * 270.27666 * 1 2 3 24 24 H 1.09000 * 109.47400 * 30.28015 * 1 2 3 25 25 H 1.08999 * 109.46875 * 150.27493 * 1 2 3 26 26 H 1.08009 * 125.57500 * 0.03104 * 3 2 1 27 27 H 1.08002 * 125.79962 * 180.24562 * 6 4 3 28 28 H 0.96996 * 120.00689 * 359.97438 * 10 8 7 29 29 H 1.09006 * 109.47423 * 299.99724 * 11 10 8 30 30 H 1.09002 * 109.47516 * 59.99172 * 11 10 8 31 31 H 1.08995 * 109.47719 * 300.00037 * 12 11 10 32 32 H 1.09004 * 109.46942 * 60.00222 * 12 11 10 33 33 H 1.09005 * 109.46888 * 94.20768 * 14 13 12 34 34 H 1.09000 * 109.47162 * 214.21298 * 14 13 12 35 35 H 1.09005 * 109.46780 * 334.21034 * 14 13 12 36 36 H 0.96999 * 120.00090 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6554 -0.0043 5 1 4.3840 1.2414 -0.0077 6 6 3.6657 -0.6901 0.0027 7 6 2.3865 -1.1740 0.0058 8 6 1.9750 -2.5879 0.0140 9 8 0.7937 -2.8776 0.0165 10 7 2.9075 -3.5610 0.0186 11 6 2.4983 -4.9677 0.0273 12 6 3.7408 -5.8603 0.0305 13 7 3.3315 -7.2670 0.0398 14 6 3.1291 -7.9627 1.3130 15 6 3.1382 -7.9316 -1.1419 16 1 3.6119 -7.5763 -2.0450 17 6 2.3333 -9.0620 -1.1787 18 7 1.5812 -9.3684 -0.1431 19 14 2.3177 -10.1482 -2.6984 20 1 3.6847 -10.6729 -2.9459 21 1 1.3825 -11.2821 -2.4868 22 1 1.8731 -9.3527 -3.8709 23 1 -0.3633 0.0050 1.0276 24 1 -0.3634 0.8874 -0.5182 25 1 -0.3633 -0.8924 -0.5096 26 1 1.9868 2.1060 0.0005 27 1 4.5665 -1.2859 0.0051 28 1 3.8496 -3.3301 0.0163 29 1 1.9043 -5.1679 0.9191 30 1 1.9023 -5.1782 -0.8608 31 1 4.3344 -5.6602 -0.8614 32 1 4.3370 -5.6499 0.9185 33 1 2.0764 -7.9118 1.5915 34 1 3.4273 -9.0059 1.2085 35 1 3.7329 -7.4879 2.0865 36 1 1.0191 -10.1585 -0.1687 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317470292.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:26 Heat of formation + Delta-G solvation = 27.677859 kcal Electronic energy + Delta-G solvation = -17884.133133 eV Core-core repulsion = 14983.771504 eV Total energy + Delta-G solvation = -2900.361629 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.19318 -38.63664 -35.92107 -33.98611 -32.41725 -31.37524 -30.03796 -27.68088 -26.55441 -25.81482 -23.70520 -22.10551 -20.57742 -19.84015 -19.00092 -18.35892 -16.71290 -16.00490 -15.16545 -15.01704 -14.65728 -14.28275 -13.99026 -13.49151 -13.42269 -13.21978 -12.88240 -12.63754 -12.32862 -12.21963 -12.17096 -11.37873 -11.12859 -10.81597 -10.77689 -10.55913 -10.22011 -9.96303 -9.84960 -9.42075 -8.72602 -8.52575 -8.38706 -8.32048 -6.77084 -5.69748 -3.16870 1.82111 2.37511 3.09772 3.42406 3.47219 3.48240 3.74195 3.88264 4.54492 4.76567 4.96017 5.10334 5.38099 5.45725 5.58741 5.71126 5.79108 5.91180 5.96243 6.03546 6.16725 6.30186 6.34841 6.75488 6.78114 6.81309 6.84112 6.89157 7.11905 7.32717 7.41091 7.76561 7.84236 8.05703 8.42022 8.78995 9.25795 9.87956 10.36217 11.35392 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.036450 B = 0.004083 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.994322 B = 6856.767136 C = 7024.694412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.110 4.110 3 C -0.031 4.031 4 N -0.553 5.553 5 H 0.415 0.585 6 C 0.041 3.959 7 C -0.219 4.219 8 C 0.579 3.421 9 O -0.544 6.544 10 N -0.725 5.725 11 C 0.097 3.903 12 C 0.144 3.856 13 N -0.597 5.597 14 C 0.163 3.837 15 C -0.260 4.260 16 H 0.069 0.931 17 C 0.004 3.996 18 N -0.906 5.906 19 Si 0.907 3.093 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.282 1.282 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.080 0.920 26 H 0.167 0.833 27 H 0.172 0.828 28 H 0.390 0.610 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.041 0.959 33 H 0.029 0.971 34 H 0.047 0.953 35 H -0.003 1.003 36 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.248 20.343 1.629 21.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C -0.159 4.159 4 N -0.147 5.147 5 H 0.251 0.749 6 C -0.095 4.095 7 C -0.230 4.230 8 C 0.366 3.634 9 O -0.423 6.423 10 N -0.376 5.376 11 C -0.029 4.029 12 C 0.016 3.984 13 N -0.320 5.320 14 C 0.018 3.982 15 C -0.390 4.390 16 H 0.087 0.913 17 C -0.195 4.195 18 N -0.551 5.551 19 Si 0.737 3.263 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.209 1.209 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.099 0.901 26 H 0.184 0.816 27 H 0.189 0.811 28 H 0.223 0.777 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.016 0.984 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.361 20.002 1.668 20.775 hybrid contribution 0.705 -0.211 -0.788 1.078 sum 6.065 19.791 0.880 20.718 Atomic orbital electron populations 1.20195 0.89396 1.02581 1.01925 1.20597 0.95697 0.90465 1.04931 1.21534 0.82508 0.99081 1.12755 1.41449 1.08169 1.06668 1.58406 0.74860 1.21929 0.98631 0.83768 1.05152 1.20579 0.92584 0.93297 1.16529 1.17454 0.85723 0.83891 0.76311 1.90751 1.17295 1.83729 1.50484 1.46024 1.08823 1.07300 1.75479 1.22452 1.00727 0.77348 1.02328 1.20987 0.93261 0.85197 0.98965 1.43917 1.80141 1.04266 1.03638 1.20843 0.97817 0.95589 0.83925 1.19184 1.23905 1.07967 0.87945 0.91278 1.25056 0.96591 1.00282 0.97528 1.70057 1.27820 1.27276 1.29934 0.86303 0.77306 0.80124 0.82599 1.21052 1.21584 1.20869 0.91889 0.92588 0.90131 0.81611 0.81120 0.77718 0.92282 0.91412 0.93425 0.94090 0.95222 0.93474 0.98428 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 9.98 36.01 0.36 -0.71 16 2 C -0.11 -1.44 6.35 -102.54 -0.65 -2.09 16 3 C -0.03 -0.29 11.82 -16.83 -0.20 -0.49 16 4 N -0.55 -4.21 5.90 -12.84 -0.08 -4.29 16 5 H 0.42 1.57 8.96 -40.82 -0.37 1.20 16 6 C 0.04 0.40 11.40 -16.84 -0.19 0.21 16 7 C -0.22 -3.11 6.29 -103.35 -0.65 -3.76 16 8 C 0.58 10.37 7.81 -12.59 -0.10 10.27 16 9 O -0.54 -12.06 15.32 5.25 0.08 -11.98 16 10 N -0.73 -11.83 5.55 -61.43 -0.34 -12.17 16 11 C 0.10 1.99 6.00 -4.04 -0.02 1.96 16 12 C 0.14 2.92 5.82 -4.04 -0.02 2.90 16 13 N -0.60 -15.22 2.93 -181.11 -0.53 -15.75 16 14 C 0.16 4.09 9.01 59.85 0.54 4.63 16 15 C -0.26 -7.25 9.67 -15.05 -0.15 -7.40 16 16 H 0.07 1.86 7.84 -52.49 -0.41 1.45 16 17 C 0.00 0.12 5.13 -17.43 -0.09 0.03 16 18 N -0.91 -26.94 10.58 55.49 0.59 -26.35 16 19 Si 0.91 22.18 29.57 -169.99 -5.03 17.16 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.08 1.25 6.85 -51.93 -0.36 0.89 16 26 H 0.17 1.02 8.06 -52.48 -0.42 0.60 16 27 H 0.17 1.11 7.45 -52.49 -0.39 0.72 16 28 H 0.39 4.82 7.42 -40.82 -0.30 4.52 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 31 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 32 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 33 H 0.03 0.81 7.42 -51.93 -0.39 0.42 16 34 H 0.05 1.26 7.19 -51.93 -0.37 0.88 16 35 H 0.00 -0.06 7.84 -51.93 -0.41 -0.47 16 36 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 306.26 15.07 4.62 4.62 Total: -1.00 -35.27 306.26 -6.93 -42.21 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.07 Total: 1.02 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -1.18 Total: 5.54 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.36 Total: -58.56 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.27 -6.93 -42.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317470292.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.885 kcal (2) G-P(sol) polarization free energy of solvation -35.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds