Wall clock time and date at job start Sun Mar 29 2020 23:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34485 * 126.83128 * 2 1 4 4 N 1.36444 * 108.85783 * 180.19234 * 3 2 1 5 5 H 0.96999 * 124.85640 * 179.82338 * 4 3 2 6 6 C 1.34665 * 110.29497 * 359.55223 * 4 3 2 7 7 C 1.36766 * 108.39514 * 0.26467 * 6 4 3 8 8 C 1.47263 * 126.94056 * 180.02562 * 7 6 4 9 9 O 1.21635 * 120.00035 * 179.97438 * 8 7 6 10 10 N 1.34774 * 119.99908 * 359.97438 * 8 7 6 11 11 C 1.46501 * 119.99963 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47188 * 179.97438 * 11 10 8 13 13 N 1.46502 * 109.47163 * 179.97438 * 12 11 10 14 14 C 1.46499 * 120.00586 * 270.00193 * 13 12 11 15 15 C 1.36946 * 119.99727 * 90.00268 * 13 12 11 16 16 H 1.07997 * 119.99947 * 22.34333 * 15 13 12 17 17 C 1.38814 * 119.99691 * 202.34606 * 15 13 12 18 18 N 1.31613 * 120.00322 * 11.34478 * 17 15 13 19 19 Si 1.86800 * 119.99686 * 191.34553 * 17 15 13 20 20 H 1.48503 * 109.46972 * 59.99887 * 19 17 15 21 21 H 1.48496 * 109.47155 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47177 * 300.00441 * 19 17 15 23 23 H 1.08996 * 109.47148 * 270.27666 * 1 2 3 24 24 H 1.09000 * 109.47400 * 30.28015 * 1 2 3 25 25 H 1.08999 * 109.46875 * 150.27493 * 1 2 3 26 26 H 1.08009 * 125.57500 * 0.03104 * 3 2 1 27 27 H 1.08002 * 125.79962 * 180.24562 * 6 4 3 28 28 H 0.96996 * 120.00689 * 359.97438 * 10 8 7 29 29 H 1.09006 * 109.47423 * 299.99724 * 11 10 8 30 30 H 1.09002 * 109.47516 * 59.99172 * 11 10 8 31 31 H 1.08995 * 109.47719 * 300.00037 * 12 11 10 32 32 H 1.09004 * 109.46942 * 60.00222 * 12 11 10 33 33 H 1.09005 * 109.46888 * 94.20768 * 14 13 12 34 34 H 1.09000 * 109.47162 * 214.21298 * 14 13 12 35 35 H 1.09005 * 109.46780 * 334.21034 * 14 13 12 36 36 H 0.96999 * 120.00090 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6554 -0.0043 5 1 4.3840 1.2414 -0.0077 6 6 3.6657 -0.6901 0.0027 7 6 2.3865 -1.1740 0.0058 8 6 1.9750 -2.5879 0.0140 9 8 0.7937 -2.8776 0.0165 10 7 2.9075 -3.5610 0.0186 11 6 2.4983 -4.9677 0.0273 12 6 3.7408 -5.8603 0.0305 13 7 3.3315 -7.2670 0.0398 14 6 3.1291 -7.9627 1.3130 15 6 3.1382 -7.9316 -1.1419 16 1 3.6119 -7.5763 -2.0450 17 6 2.3333 -9.0620 -1.1787 18 7 1.5812 -9.3684 -0.1431 19 14 2.3177 -10.1482 -2.6984 20 1 3.6847 -10.6729 -2.9459 21 1 1.3825 -11.2821 -2.4868 22 1 1.8731 -9.3527 -3.8709 23 1 -0.3633 0.0050 1.0276 24 1 -0.3634 0.8874 -0.5182 25 1 -0.3633 -0.8924 -0.5096 26 1 1.9868 2.1060 0.0005 27 1 4.5665 -1.2859 0.0051 28 1 3.8496 -3.3301 0.0163 29 1 1.9043 -5.1679 0.9191 30 1 1.9023 -5.1782 -0.8608 31 1 4.3344 -5.6602 -0.8614 32 1 4.3370 -5.6499 0.9185 33 1 2.0764 -7.9118 1.5915 34 1 3.4273 -9.0059 1.2085 35 1 3.7329 -7.4879 2.0865 36 1 1.0191 -10.1585 -0.1687 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317470292.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:26 Heat of formation + Delta-G solvation = 1.514912 kcal Electronic energy + Delta-G solvation = -17885.267643 eV Core-core repulsion = 14983.771504 eV Total energy + Delta-G solvation = -2901.496140 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.03463 -40.03942 -37.78772 -35.64569 -33.31987 -33.29734 -31.25754 -29.23087 -27.90859 -27.42498 -25.34247 -23.47255 -22.37762 -20.83590 -20.14694 -19.14344 -18.75694 -17.29936 -16.71989 -16.56956 -16.41153 -15.57500 -15.23587 -14.93773 -14.80384 -14.50717 -14.22904 -14.06163 -13.82012 -13.57354 -13.25675 -13.09301 -12.75119 -12.62469 -12.48447 -12.28095 -12.09675 -11.99539 -11.75552 -10.89067 -10.64664 -10.08017 -9.48399 -9.13875 -8.85475 -7.83977 -5.33732 0.84036 1.47081 1.49650 1.53370 1.56243 2.27425 2.49581 2.57984 2.63465 3.31660 3.79980 4.04119 4.11956 4.26671 4.33980 4.36577 4.53133 4.67115 4.75815 4.85475 4.90734 4.95568 5.09140 5.16128 5.20486 5.32899 5.36560 5.55975 5.64516 5.72964 5.85958 6.00005 6.31883 6.73116 6.82157 7.13671 7.46732 7.84595 8.26996 9.19819 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.036450 B = 0.004083 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.994322 B = 6856.767136 C = 7024.694412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.156 4.156 3 C -0.006 4.006 4 N -0.531 5.531 5 H 0.440 0.560 6 C 0.074 3.926 7 C -0.272 4.272 8 C 0.572 3.428 9 O -0.603 6.603 10 N -0.709 5.709 11 C 0.119 3.881 12 C 0.148 3.852 13 N -0.615 5.615 14 C 0.175 3.825 15 C -0.269 4.269 16 H 0.077 0.923 17 C -0.055 4.055 18 N -0.941 5.941 19 Si 0.972 3.028 20 H -0.272 1.272 21 H -0.296 1.296 22 H -0.278 1.278 23 H 0.057 0.943 24 H 0.082 0.918 25 H 0.039 0.961 26 H 0.204 0.796 27 H 0.209 0.791 28 H 0.413 0.587 29 H 0.029 0.971 30 H 0.025 0.975 31 H 0.066 0.934 32 H 0.076 0.924 33 H -0.004 1.004 34 H 0.023 0.977 35 H 0.036 0.964 36 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.329 23.056 1.134 24.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.163 4.163 3 C -0.134 4.134 4 N -0.126 5.126 5 H 0.281 0.719 6 C -0.065 4.065 7 C -0.282 4.282 8 C 0.363 3.637 9 O -0.486 6.486 10 N -0.361 5.361 11 C -0.009 4.009 12 C 0.021 3.979 13 N -0.338 5.338 14 C 0.030 3.970 15 C -0.399 4.399 16 H 0.095 0.905 17 C -0.250 4.250 18 N -0.587 5.587 19 Si 0.800 3.200 20 H -0.197 1.197 21 H -0.222 1.222 22 H -0.204 1.204 23 H 0.075 0.925 24 H 0.101 0.899 25 H 0.058 0.942 26 H 0.221 0.779 27 H 0.226 0.774 28 H 0.251 0.749 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.015 0.985 34 H 0.042 0.958 35 H 0.055 0.945 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.534 22.792 1.166 24.366 hybrid contribution -0.189 -0.888 -0.609 1.093 sum 8.345 21.905 0.557 23.447 Atomic orbital electron populations 1.20094 0.90392 1.01832 1.01384 1.20818 0.95885 0.91640 1.07909 1.21946 0.82384 0.99619 1.09459 1.41511 1.08699 1.06313 1.56084 0.71933 1.22326 0.97990 0.84762 1.01379 1.20388 0.95198 0.91195 1.21440 1.18147 0.84974 0.85714 0.74859 1.90717 1.19806 1.84806 1.53225 1.45674 1.10034 1.05254 1.75166 1.21872 1.00045 0.80086 0.98855 1.21139 0.92954 0.82300 1.01500 1.44188 1.80044 1.06555 1.03035 1.20600 0.96457 0.94881 0.85042 1.19595 1.23224 1.08087 0.89005 0.90534 1.25878 0.96719 1.01939 1.00430 1.70248 1.28912 1.27585 1.31962 0.85274 0.77533 0.78042 0.79184 1.19722 1.22183 1.20415 0.92470 0.89882 0.94173 0.77919 0.77404 0.74948 0.95293 0.95675 0.91528 0.90545 0.98532 0.95847 0.94518 0.94285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.09 9.98 71.24 0.71 -1.38 16 2 C -0.16 -3.90 6.35 -18.51 -0.12 -4.02 16 3 C -0.01 -0.09 11.82 83.12 0.98 0.90 16 4 N -0.53 -5.43 5.90 -194.55 -1.15 -6.58 16 5 H 0.44 0.66 8.96 -92.71 -0.83 -0.17 16 6 C 0.07 1.14 11.40 83.91 0.96 2.10 16 7 C -0.27 -7.40 6.29 -19.04 -0.12 -7.52 16 8 C 0.57 21.02 7.81 86.62 0.68 21.69 16 9 O -0.60 -28.69 15.32 -4.14 -0.06 -28.75 16 10 N -0.71 -22.75 5.55 -466.51 -2.59 -25.34 16 11 C 0.12 4.96 6.00 86.38 0.52 5.48 16 12 C 0.15 5.77 5.82 86.38 0.50 6.28 16 13 N -0.62 -31.33 2.93 -726.92 -2.13 -33.46 16 14 C 0.18 8.88 9.01 127.77 1.15 10.03 16 15 C -0.27 -15.03 9.67 84.03 0.81 -14.22 16 16 H 0.08 4.07 7.84 -2.91 -0.02 4.05 16 17 C -0.05 -3.15 5.13 84.86 0.44 -2.72 16 18 N -0.94 -57.76 10.58 21.65 0.23 -57.53 16 19 Si 0.97 46.17 29.57 68.60 2.03 48.19 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.04 1.35 6.85 -2.39 -0.02 1.34 16 26 H 0.20 1.42 8.06 -2.91 -0.02 1.39 16 27 H 0.21 1.52 7.45 -2.91 -0.02 1.50 16 28 H 0.41 9.08 7.42 -92.71 -0.69 8.39 16 29 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 2.37 8.03 -2.39 -0.02 2.35 16 32 H 0.08 2.47 7.86 -2.39 -0.02 2.45 16 33 H 0.00 -0.21 7.42 -2.38 -0.02 -0.23 16 34 H 0.02 1.26 7.19 -2.39 -0.02 1.24 16 35 H 0.04 1.54 7.84 -2.38 -0.02 1.52 16 36 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -82.91 306.26 2.42 -80.49 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -0.42 Total: 6.34 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 6.51 Total: 16.63 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -5.63 Total: -122.90 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.06 Total: -28.75 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -82.91 2.42 -80.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317470292.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.009 kcal (2) G-P(sol) polarization free energy of solvation -82.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds