Wall clock time and date at job start Sun Mar 29 2020 23:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47010 * 2 1 4 4 C 1.50702 * 109.47059 * 179.97438 * 3 2 1 5 5 N 1.30446 * 125.99283 * 269.97275 * 4 3 2 6 6 N 1.39935 * 108.90003 * 179.76698 * 5 4 3 7 7 H 0.96998 * 125.75472 * 180.27595 * 6 5 4 8 8 C 1.34258 * 108.49136 * 0.43452 * 6 5 4 9 9 C 1.38054 * 107.41520 * 359.57809 * 8 6 5 10 10 C 1.47421 * 126.41174 * 180.26178 * 9 8 6 11 11 O 1.21602 * 119.99937 * 179.97438 * 10 9 8 12 12 N 1.34779 * 120.00515 * 359.97438 * 10 9 8 13 13 C 1.46501 * 120.00176 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46804 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.46629 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00412 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99522 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00366 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99819 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47406 * 59.99687 * 19 17 15 21 21 H 1.48499 * 109.47012 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46691 * 299.99586 * 19 17 15 23 23 H 1.08998 * 109.47183 * 60.00156 * 1 2 3 24 24 H 1.09008 * 109.46984 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47334 * 299.99794 * 1 2 3 26 26 H 1.09000 * 109.47334 * 240.00206 * 2 1 3 27 27 H 1.08998 * 109.47183 * 119.99844 * 2 1 3 28 28 H 1.08998 * 109.47206 * 60.00650 * 3 2 1 29 29 H 1.09002 * 109.47460 * 300.00108 * 3 2 1 30 30 H 1.08002 * 126.29527 * 179.84921 * 8 6 5 31 31 H 0.97000 * 119.99526 * 359.97438 * 12 10 9 32 32 H 1.08991 * 109.46974 * 300.00073 * 13 12 10 33 33 H 1.09000 * 109.47030 * 60.00136 * 13 12 10 34 34 H 1.09000 * 109.46993 * 300.00196 * 14 13 12 35 35 H 1.09000 * 109.46880 * 60.00455 * 14 13 12 36 36 H 0.96997 * 119.99844 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.3131 1.4432 1.0564 6 7 5.6508 1.4375 0.6457 7 1 6.4236 1.4330 1.2318 8 6 5.6842 1.4430 -0.6965 9 6 4.3776 1.4424 -1.1423 10 6 3.9325 1.4419 -2.5477 11 8 2.7450 1.4409 -2.8094 12 7 4.8417 1.4425 -3.5427 13 6 4.3994 1.4414 -4.9393 14 6 5.6206 1.4430 -5.8610 15 6 5.1655 1.4425 -7.2977 16 1 4.1108 1.4415 -7.5301 17 6 6.0957 1.4432 -8.3154 18 7 7.3801 1.4448 -8.0324 19 14 5.5316 1.4433 -10.0962 20 1 4.7141 2.6553 -10.3565 21 1 6.7169 1.4435 -10.9908 22 1 4.7155 0.2303 -10.3570 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 6.5702 1.4431 -1.3140 31 1 5.7890 1.4436 -3.3339 32 1 3.8009 0.5507 -5.1301 33 1 3.7988 2.3306 -5.1309 34 1 6.2188 2.3339 -5.6700 35 1 6.2215 0.5539 -5.6695 36 1 8.0344 1.4450 -8.7484 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320691412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:37 Heat of formation + Delta-G solvation = 5.304654 kcal Electronic energy + Delta-G solvation = -17763.446238 eV Core-core repulsion = 14862.114434 eV Total energy + Delta-G solvation = -2901.331804 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.43400 -38.63953 -35.36647 -34.62717 -32.84283 -31.62927 -30.80534 -29.08143 -27.10072 -24.89503 -22.88029 -21.94651 -21.07597 -20.09547 -19.46966 -18.29589 -16.50479 -15.99993 -15.24486 -15.12653 -14.82596 -14.46038 -14.41088 -14.36621 -13.50652 -13.12124 -12.97476 -12.86166 -12.28312 -11.96139 -11.51902 -11.24926 -11.19967 -11.01482 -10.99842 -10.65084 -10.55363 -10.30273 -9.76514 -9.57459 -9.44033 -9.17181 -8.86626 -8.49015 -8.27915 -6.09372 -4.11914 1.49940 2.18991 2.61528 3.31650 3.35362 3.38581 3.77657 3.82671 4.41509 4.45587 4.60921 5.02195 5.13613 5.20918 5.27889 5.32790 5.50324 5.57099 5.78000 5.84093 5.92308 6.06611 6.30671 6.35359 6.38892 6.39266 6.49233 6.77210 6.96070 7.01740 7.46622 7.53344 7.62499 7.89337 8.09988 8.29530 8.76096 8.94156 9.52950 11.02265 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.029884 B = 0.004152 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.744544 B = 6741.432679 C = 7557.786902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.044 4.044 4 C 0.137 3.863 5 N -0.304 5.304 6 N -0.465 5.465 7 H 0.442 0.558 8 C 0.101 3.899 9 C -0.279 4.279 10 C 0.583 3.417 11 O -0.548 6.548 12 N -0.721 5.721 13 C 0.124 3.876 14 C 0.012 3.988 15 C -0.521 4.521 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.896 5.896 19 Si 0.897 3.103 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.187 0.813 31 H 0.393 0.607 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.595 -0.870 17.420 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.084 4.084 4 C -0.032 4.032 5 N -0.126 5.126 6 N -0.170 5.170 7 H 0.286 0.714 8 C -0.051 4.051 9 C -0.294 4.294 10 C 0.369 3.631 11 O -0.427 6.427 12 N -0.371 5.371 13 C 0.002 3.998 14 C -0.025 4.025 15 C -0.560 4.560 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.724 3.276 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.204 0.796 31 H 0.226 0.774 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.241 -0.863 18.380 18.882 hybrid contribution 1.042 0.008 -1.512 1.837 sum -3.198 -0.855 16.867 17.189 Atomic orbital electron populations 1.21734 0.95422 1.01559 1.01910 1.21360 0.95909 0.95508 1.02142 1.20220 0.85366 0.98667 1.04107 1.22461 0.97054 0.94894 0.88745 1.77115 0.86268 1.26654 1.22561 1.46067 1.07744 1.57683 1.05470 0.71364 1.23225 0.99279 0.97066 0.85562 1.20511 0.91989 1.21728 0.95200 1.17264 0.85956 0.76479 0.83386 1.90710 1.16314 1.51366 1.84283 1.46169 1.09064 1.74384 1.07448 1.21701 0.99672 1.00850 0.77620 1.19322 0.91898 0.97742 0.93529 1.21026 0.93183 1.51304 0.90474 0.92261 1.24987 0.94845 0.94986 0.99419 1.69942 1.00275 1.50454 1.32777 0.86578 0.78042 0.78809 0.84146 1.20092 1.21278 1.20098 0.92151 0.92818 0.92973 0.91312 0.92484 0.90854 0.87865 0.79601 0.77414 0.92510 0.92515 0.96002 0.96003 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.15 0.37 -1.17 16 2 C -0.11 -1.34 5.92 -26.74 -0.16 -1.50 16 3 C -0.04 -0.58 5.25 -27.88 -0.15 -0.72 16 4 C 0.14 1.93 6.52 -82.02 -0.53 1.39 16 5 N -0.30 -3.97 12.63 33.90 0.43 -3.54 16 6 N -0.47 -4.53 7.29 30.85 0.22 -4.31 16 7 H 0.44 2.57 8.96 -182.72 -1.64 0.93 16 8 C 0.10 1.06 11.52 -16.56 -0.19 0.87 16 9 C -0.28 -4.01 6.13 -105.07 -0.64 -4.65 16 10 C 0.58 10.15 7.81 -12.52 -0.10 10.06 16 11 O -0.55 -11.10 14.92 5.28 0.08 -11.03 16 12 N -0.72 -12.44 5.54 -61.38 -0.34 -12.78 16 13 C 0.12 2.60 5.61 -4.04 -0.02 2.58 16 14 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 15 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -25.88 13.29 55.43 0.74 -25.14 16 19 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.10 1.50 6.56 -51.93 -0.34 1.16 16 30 H 0.19 1.27 7.46 -52.49 -0.39 0.88 16 31 H 0.39 5.68 7.40 -40.82 -0.30 5.38 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 310.70 15.07 4.68 4.68 Total: -1.00 -32.90 310.70 -7.63 -40.53 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.44 Total: 1.45 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.98 Total: -6.06 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 1.05 Total: -45.77 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.90 -7.63 -40.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320691412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.833 kcal (2) G-P(sol) polarization free energy of solvation -32.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds