Wall clock time and date at job start Sun Mar 29 2020 23:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47010 * 2 1 4 4 C 1.50702 * 109.47059 * 179.97438 * 3 2 1 5 5 N 1.30446 * 125.99283 * 269.97275 * 4 3 2 6 6 N 1.39935 * 108.90003 * 179.76698 * 5 4 3 7 7 H 0.96998 * 125.75472 * 180.27595 * 6 5 4 8 8 C 1.34258 * 108.49136 * 0.43452 * 6 5 4 9 9 C 1.38054 * 107.41520 * 359.57809 * 8 6 5 10 10 C 1.47421 * 126.41174 * 180.26178 * 9 8 6 11 11 O 1.21602 * 119.99937 * 179.97438 * 10 9 8 12 12 N 1.34779 * 120.00515 * 359.97438 * 10 9 8 13 13 C 1.46501 * 120.00176 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46804 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.46629 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00412 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99522 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00366 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99819 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47406 * 59.99687 * 19 17 15 21 21 H 1.48499 * 109.47012 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46691 * 299.99586 * 19 17 15 23 23 H 1.08998 * 109.47183 * 60.00156 * 1 2 3 24 24 H 1.09008 * 109.46984 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47334 * 299.99794 * 1 2 3 26 26 H 1.09000 * 109.47334 * 240.00206 * 2 1 3 27 27 H 1.08998 * 109.47183 * 119.99844 * 2 1 3 28 28 H 1.08998 * 109.47206 * 60.00650 * 3 2 1 29 29 H 1.09002 * 109.47460 * 300.00108 * 3 2 1 30 30 H 1.08002 * 126.29527 * 179.84921 * 8 6 5 31 31 H 0.97000 * 119.99526 * 359.97438 * 12 10 9 32 32 H 1.08991 * 109.46974 * 300.00073 * 13 12 10 33 33 H 1.09000 * 109.47030 * 60.00136 * 13 12 10 34 34 H 1.09000 * 109.46993 * 300.00196 * 14 13 12 35 35 H 1.09000 * 109.46880 * 60.00455 * 14 13 12 36 36 H 0.96997 * 119.99844 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.3131 1.4432 1.0564 6 7 5.6508 1.4375 0.6457 7 1 6.4236 1.4330 1.2318 8 6 5.6842 1.4430 -0.6965 9 6 4.3776 1.4424 -1.1423 10 6 3.9325 1.4419 -2.5477 11 8 2.7450 1.4409 -2.8094 12 7 4.8417 1.4425 -3.5427 13 6 4.3994 1.4414 -4.9393 14 6 5.6206 1.4430 -5.8610 15 6 5.1655 1.4425 -7.2977 16 1 4.1108 1.4415 -7.5301 17 6 6.0957 1.4432 -8.3154 18 7 7.3801 1.4448 -8.0324 19 14 5.5316 1.4433 -10.0962 20 1 4.7141 2.6553 -10.3565 21 1 6.7169 1.4435 -10.9908 22 1 4.7155 0.2303 -10.3570 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 6.5702 1.4431 -1.3140 31 1 5.7890 1.4436 -3.3339 32 1 3.8009 0.5507 -5.1301 33 1 3.7988 2.3306 -5.1309 34 1 6.2188 2.3339 -5.6700 35 1 6.2215 0.5539 -5.6695 36 1 8.0344 1.4450 -8.7484 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320691412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:36 Heat of formation + Delta-G solvation = -17.683104 kcal Electronic energy + Delta-G solvation = -17764.443062 eV Core-core repulsion = 14862.114434 eV Total energy + Delta-G solvation = -2902.328628 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.42483 -40.04505 -36.64812 -36.02222 -34.75242 -32.57896 -32.21474 -30.61471 -28.05831 -26.74323 -24.15807 -22.99429 -22.71092 -21.32724 -20.55783 -19.35490 -18.48498 -17.35406 -16.51439 -16.49746 -16.26594 -16.01190 -15.70263 -15.34928 -14.76833 -14.52434 -14.28885 -14.19498 -13.91136 -13.19542 -12.89946 -12.87065 -12.52207 -12.44658 -12.18251 -12.15888 -11.99000 -11.63497 -11.54234 -11.42081 -10.74820 -10.56666 -10.50695 -10.07552 -9.68755 -8.21378 -6.30998 0.55002 1.08883 1.44092 1.45943 1.53802 1.80704 2.35292 2.49732 2.53421 3.13690 3.45589 3.75009 4.12480 4.16378 4.22616 4.37847 4.41335 4.56615 4.60900 4.65650 4.85923 4.89485 4.91963 5.01459 5.13359 5.35262 5.35443 5.43198 5.47458 5.56418 5.63939 5.83262 6.20542 6.26841 6.50318 6.78202 6.82488 7.38081 7.40922 8.90161 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.029884 B = 0.004152 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.744544 B = 6741.432679 C = 7557.786902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.044 4.044 4 C 0.125 3.875 5 N -0.318 5.318 6 N -0.445 5.445 7 H 0.462 0.538 8 C 0.134 3.866 9 C -0.318 4.318 10 C 0.584 3.416 11 O -0.584 6.584 12 N -0.715 5.715 13 C 0.144 3.856 14 C 0.023 3.977 15 C -0.547 4.547 16 H 0.058 0.942 17 C 0.009 3.991 18 N -0.926 5.926 19 Si 0.962 3.038 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.269 1.269 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.227 0.773 31 H 0.408 0.592 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.010 0.990 35 H 0.010 0.990 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.917 -0.923 18.233 18.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.083 4.083 4 C -0.042 4.042 5 N -0.141 5.141 6 N -0.151 5.151 7 H 0.310 0.690 8 C -0.020 4.020 9 C -0.333 4.333 10 C 0.372 3.628 11 O -0.465 6.465 12 N -0.366 5.366 13 C 0.020 3.980 14 C -0.014 4.014 15 C -0.585 4.585 16 H 0.076 0.924 17 C -0.190 4.190 18 N -0.566 5.566 19 Si 0.786 3.214 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.194 1.194 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.244 0.756 31 H 0.244 0.756 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.533 -0.916 19.249 19.592 hybrid contribution 0.903 0.027 -1.679 1.907 sum -2.630 -0.888 17.569 17.787 Atomic orbital electron populations 1.21716 0.94082 1.02308 1.02197 1.21297 0.97081 0.94812 1.01155 1.20189 0.85411 0.99015 1.03705 1.22596 0.97564 0.95107 0.88978 1.77071 0.87506 1.27192 1.22349 1.46108 1.07523 1.55727 1.05700 0.68952 1.23702 0.99025 0.93423 0.85887 1.20312 0.93979 1.25674 0.93348 1.17660 0.85324 0.75273 0.84495 1.90688 1.17883 1.52958 1.85009 1.45908 1.10039 1.74713 1.05908 1.21189 0.97795 0.99736 0.79281 1.19130 0.92637 0.96453 0.93181 1.21457 0.93357 1.51450 0.92275 0.92411 1.25819 0.94913 0.94467 1.03755 1.70040 1.01256 1.51091 1.34165 0.85550 0.77804 0.79086 0.78924 1.19421 1.20624 1.19434 0.93248 0.91848 0.91274 0.93865 0.91705 0.89306 0.90050 0.75628 0.75634 0.93678 0.93663 0.97131 0.97139 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.91 71.98 0.71 -2.23 16 2 C -0.10 -2.55 5.92 30.59 0.18 -2.37 16 3 C -0.04 -1.15 5.25 29.85 0.16 -0.99 16 4 C 0.13 3.44 6.52 43.52 0.28 3.72 16 5 N -0.32 -7.72 12.63 -46.67 -0.59 -8.31 16 6 N -0.44 -7.27 7.29 -56.31 -0.41 -7.68 16 7 H 0.46 3.64 8.96 -213.43 -1.91 1.73 16 8 C 0.13 2.40 11.52 84.28 0.97 3.38 16 9 C -0.32 -8.79 6.13 -20.15 -0.12 -8.91 16 10 C 0.58 20.39 7.81 86.66 0.68 21.07 16 11 O -0.58 -24.43 14.92 -4.04 -0.06 -24.49 16 12 N -0.71 -24.43 5.54 -466.38 -2.59 -27.02 16 13 C 0.14 6.12 5.61 86.38 0.48 6.61 16 14 C 0.02 1.16 5.09 29.85 0.15 1.31 16 15 C -0.55 -30.24 9.11 25.60 0.23 -30.00 16 16 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 17 C 0.01 0.51 5.46 84.65 0.46 0.98 16 18 N -0.93 -53.44 13.29 21.45 0.28 -53.16 16 19 Si 0.96 43.21 29.54 68.60 2.03 45.24 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.08 2.48 6.56 -2.39 -0.02 2.46 16 30 H 0.23 2.10 7.46 -2.91 -0.02 2.08 16 31 H 0.41 11.23 7.40 -92.71 -0.69 10.55 16 32 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -71.31 310.70 1.35 -69.96 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -1.50 Total: 12.90 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 4.19 Total: -7.44 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -3.30 Total: -96.16 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.06 Total: -24.49 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -71.31 1.35 -69.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320691412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.278 kcal (2) G-P(sol) polarization free energy of solvation -71.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds