Wall clock time and date at job start Sun Mar 29 2020 22:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38119 * 120.39939 * 2 1 4 4 C 1.39626 * 118.33287 * 180.02562 * 3 2 1 5 5 N 1.38542 * 120.52956 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99646 * 190.86566 * 5 4 3 7 7 C 1.46501 * 120.00247 * 10.86311 * 5 4 3 8 8 H 1.09001 * 109.47028 * 1.04908 * 7 5 4 9 9 C 1.52994 * 109.47165 * 121.04742 * 7 5 4 10 10 C 1.50693 * 109.47077 * 241.05228 * 7 5 4 11 11 H 1.08000 * 120.00621 * 359.97438 * 10 7 5 12 12 C 1.37877 * 119.99722 * 179.97438 * 10 7 5 13 13 N 1.31507 * 120.00522 * 0.02562 * 12 10 7 14 14 Si 1.86809 * 119.99728 * 179.97438 * 12 10 7 15 15 H 1.48508 * 109.46862 * 90.00514 * 14 12 10 16 16 H 1.48498 * 109.46753 * 209.99875 * 14 12 10 17 17 H 1.48498 * 109.47261 * 330.00170 * 14 12 10 18 18 N 1.32993 * 118.93604 * 359.73449 * 4 3 2 19 19 C 1.31753 * 120.68778 * 0.53717 * 18 4 3 20 20 C 1.50694 * 119.08591 * 179.72221 * 19 18 4 21 21 O 1.42896 * 109.47269 * 269.73662 * 20 19 18 22 22 N 1.31794 * 121.82817 * 359.44767 * 19 18 4 23 23 H 1.09001 * 109.46990 * 269.97388 * 1 2 3 24 24 H 1.09002 * 109.47633 * 29.97813 * 1 2 3 25 25 H 1.09001 * 109.47120 * 149.98119 * 1 2 3 26 26 H 1.07998 * 120.83298 * 359.97438 * 3 2 1 27 27 H 1.08996 * 109.47275 * 90.00158 * 6 5 4 28 28 H 1.09009 * 109.46893 * 210.00125 * 6 5 4 29 29 H 1.08998 * 109.47155 * 329.99606 * 6 5 4 30 30 H 1.09001 * 109.47012 * 60.00155 * 9 7 5 31 31 H 1.08997 * 109.47379 * 180.02562 * 9 7 5 32 32 H 1.09003 * 109.47149 * 300.00605 * 9 7 5 33 33 H 0.96994 * 120.00725 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.47389 * 149.73106 * 20 19 18 35 35 H 1.08998 * 109.46941 * 29.73253 * 20 19 18 36 36 H 0.96697 * 114.00072 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6012 1.1409 -0.0005 5 7 4.3476 2.3082 0.0000 6 6 5.7918 2.2541 -0.2398 7 6 3.6926 3.5964 0.2402 8 1 2.6287 3.4360 0.4151 9 6 4.3161 4.2646 1.4672 10 6 3.8755 4.4850 -0.9631 11 1 4.4250 4.1263 -1.8209 12 6 3.3412 5.7560 -0.9690 13 7 2.6725 6.1931 0.0756 14 14 3.5685 6.8578 -2.4603 15 1 2.4429 6.6488 -3.4063 16 1 3.5939 8.2780 -2.0272 17 1 4.8492 6.5224 -3.1330 18 7 4.2023 -0.0454 0.0043 19 6 3.4956 -1.1573 -0.0010 20 6 4.2140 -2.4820 -0.0015 21 8 4.4407 -2.9004 -1.3489 22 7 2.1777 -1.1432 -0.0005 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6861 2.1380 -0.0004 27 1 5.9864 2.3458 -1.3083 28 1 6.2789 3.0730 0.2898 29 1 6.1847 1.3035 0.1209 30 1 5.3800 4.4249 1.2923 31 1 3.8285 5.2228 1.6462 32 1 4.1838 3.6217 2.3375 33 1 2.2963 7.0871 0.0714 34 1 3.6051 -3.2258 0.5124 35 1 5.1697 -2.3771 0.5119 36 1 4.8999 -3.7479 -1.4256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321380681.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:47 Heat of formation + Delta-G solvation = 5.303092 kcal Electronic energy + Delta-G solvation = -18595.568658 eV Core-core repulsion = 15694.236787 eV Total energy + Delta-G solvation = -2901.331872 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.44639 -37.16058 -36.44617 -33.86177 -32.94541 -31.31310 -29.19720 -28.37121 -27.15054 -25.41580 -25.21519 -22.40627 -21.29899 -19.59757 -17.47814 -17.22718 -16.45265 -16.38122 -14.92238 -14.81759 -14.45695 -14.19772 -14.08060 -13.62286 -13.34718 -12.85554 -12.65737 -12.48826 -11.98477 -11.80198 -11.63464 -11.35207 -11.17443 -10.93264 -10.78110 -10.50138 -10.31054 -10.20283 -10.06342 -9.83840 -9.29592 -8.97339 -8.62367 -8.56676 -7.00779 -6.19985 -4.29495 1.53929 1.99357 3.20584 3.27650 3.30776 3.65647 4.04583 4.29778 4.42209 4.68788 5.02508 5.10118 5.27925 5.35448 5.54010 5.68266 5.81042 5.82095 5.98474 6.07267 6.16971 6.25684 6.32576 6.44435 6.62620 6.73992 6.86114 6.93806 7.23192 7.37843 7.57697 7.63258 7.80809 7.98268 8.17032 8.32353 8.73290 8.89690 9.38377 10.83729 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.025568 B = 0.006063 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.836700 B = 4617.082281 C = 4986.442428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.186 3.814 3 C -0.282 4.282 4 C 0.444 3.556 5 N -0.570 5.570 6 C 0.103 3.897 7 C 0.264 3.736 8 H 0.054 0.946 9 C -0.149 4.149 10 C -0.528 4.528 11 H 0.062 0.938 12 C 0.067 3.933 13 N -0.889 5.889 14 Si 0.900 3.100 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.274 1.274 18 N -0.578 5.578 19 C 0.349 3.651 20 C 0.155 3.845 21 O -0.562 6.562 22 N -0.566 5.566 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.149 0.851 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.097 0.903 32 H 0.013 0.987 33 H 0.265 0.735 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.723 -11.430 1.831 11.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.046 3.954 3 C -0.310 4.310 4 C 0.199 3.801 5 N -0.277 5.277 6 C -0.041 4.041 7 C 0.164 3.836 8 H 0.072 0.928 9 C -0.208 4.208 10 C -0.567 4.567 11 H 0.080 0.920 12 C -0.136 4.136 13 N -0.527 5.527 14 Si 0.728 3.272 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 N -0.306 5.306 19 C 0.078 3.922 20 C 0.076 3.924 21 O -0.367 6.367 22 N -0.290 5.290 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.166 0.834 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.115 0.885 32 H 0.032 0.968 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 0.898 -11.276 1.777 11.450 hybrid contribution 0.051 1.118 -0.663 1.301 sum 0.950 -10.157 1.114 10.262 Atomic orbital electron populations 1.20668 0.88642 1.03381 1.02946 1.21210 0.96740 0.87666 0.89813 1.22207 0.94127 1.00849 1.13843 1.18638 0.88467 0.86449 0.86542 1.47199 1.07209 1.03951 1.69385 1.21419 0.80761 1.01603 1.00296 1.19098 0.93142 0.76941 0.94394 0.92847 1.22134 1.00093 1.02689 0.95884 1.21341 1.35714 0.98540 1.01077 0.92015 1.24881 0.94655 0.97618 0.96431 1.69849 1.35434 1.18623 1.28826 0.86457 0.78744 0.79533 0.82509 1.20498 1.21020 1.19839 1.67657 1.41339 0.97485 1.24148 1.22088 0.86589 0.92534 0.90984 1.20480 0.97817 0.89979 0.84168 1.86544 1.81584 1.42698 1.25834 1.67896 1.09025 1.30189 1.21890 0.90369 0.90406 0.90615 0.83365 0.93850 0.91461 0.91690 0.94659 0.88479 0.96826 0.92499 0.91373 0.91445 0.77199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 10.21 36.00 0.37 -1.00 16 2 C 0.19 3.42 6.81 -82.33 -0.56 2.86 16 3 C -0.28 -5.77 9.01 -39.11 -0.35 -6.13 16 4 C 0.44 9.65 7.35 -154.77 -1.14 8.51 16 5 N -0.57 -12.61 2.86 -175.24 -0.50 -13.11 16 6 C 0.10 2.01 9.85 59.85 0.59 2.60 16 7 C 0.26 6.36 2.55 -69.09 -0.18 6.18 16 8 H 0.05 1.36 5.48 -51.93 -0.28 1.07 16 9 C -0.15 -3.43 8.93 37.15 0.33 -3.10 16 10 C -0.53 -13.78 8.38 -34.44 -0.29 -14.07 16 11 H 0.06 1.65 7.68 -52.49 -0.40 1.25 16 12 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 13 N -0.89 -23.69 11.32 55.43 0.63 -23.06 16 14 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 N -0.58 -11.93 9.13 -9.96 -0.09 -12.02 16 19 C 0.35 6.60 7.27 -157.23 -1.14 5.45 16 20 C 0.16 2.17 7.48 36.00 0.27 2.44 16 21 O -0.56 -7.80 13.64 -35.23 -0.48 -8.28 16 22 N -0.57 -10.76 10.27 -7.07 -0.07 -10.83 16 23 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.15 3.08 6.03 -52.49 -0.32 2.76 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.26 6.37 -51.92 -0.33 0.93 16 29 H 0.06 1.19 7.27 -51.93 -0.38 0.81 16 30 H 0.03 0.77 6.63 -51.93 -0.34 0.43 16 31 H 0.10 2.41 6.07 -51.93 -0.32 2.10 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.38 2.87 9.12 45.56 0.42 3.28 16 LS Contribution 301.12 15.07 4.54 4.54 Total: -1.00 -30.68 301.12 -7.24 -37.92 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -4.05 Total: 3.95 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -2.20 Total: 5.40 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.04 Total: -59.03 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.48 Total: -8.28 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.68 -7.24 -37.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321380681.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.223 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds